Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000004

Orthogroup ID

OG0007354

Physical Location & Seq

Genomic Coordinates Forward (+)

859047 .. 863229

Gene Structure 4183 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_4G00277450.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 465 bp

ATGGTGGGATTTAAAAATAGGTACATGACATTGGAGGTTATCTTGGATCCAAATAAAGAACTTGCAAAGAAAGATCCTGTTATCATTACCACATATAATGTTACAAAAGCCATCAAAGATAGCATTCTTGTGAACTTTGGGGAGTGTGGTCTGGCTTCTTCACTTGGATCGTTCCAAGTGAAGTATGTCAATGAGATTACAAGGCTTTGTATTATAAGAGCTTCGAGGGAGGACCATCAAAAAGTATGGTCTGCTATTACCATGGTCAGGAGTATTGCTGATTGCCCGGTCATTTTTATTTTGTTGGACTTAAGTGGGAGTATCAGAGCTTGTAAAACAGCTGCCTTGAAGTGTGATGAATTAAAATTTGAGCAGCACAAACTTGTGGTTGGATCTAATCTTTCAGCTCAAGATACTCAAAAGATGCAGTTCTATCTTGATAAGATCAAAGGCTTGGAGCACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0006464 GO:0006807 GO:0008150 GO:0008152 GO:0009249 GO:0009987 GO:0010467 GO:0018065 GO:0018193 GO:0018205 GO:0019538 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0051604 GO:0071704 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko03008 ko03013 map03008 map03013

Pfam Domains

Protein Families

RNase_P_Rpp14

Protein Analysis

154

Amino Acids

17.33

Weight (kDa)

8.79

Isoelectric Point (pI)

32.27

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RNase_P_Rpp14	PF01900	7 - 115	6.7e-29	Rpp14/Pop5 family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0007354)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G04635
fragaria_vesca	FvH4_7g33290
malus_domestica	MD01G1231100.v1.1 MD07G1302900.v1.1 MD07G1303100.v1.1
prunus_persica	Prupe.2G321800_v2.0.a1
pyrus_communis	pycom01g23910
rosa_chinensis	RchiOBHm_Chr1g0383271 RchiOBHm_Chr3g0479561
rosa_laevigata	RLG00000026117
rosa_multiflora	Rmu_sc0007173.1_g000022 Rmu_sc0014196.1_g000006 Rmu_sc0031164.1_g000002
rosa_roxburghii	Rroxscaffold_4G00277450
rosa_rugosa	Rorug01G0440000 Rorug01G0440100 Rorug01G0440200
rosa_samantha	Rh1AG465700 Rh1BG423100 Rh1CG436300 Rh1DG455800 Rh3AG227300 Rh3CG257700
rosa_wichuraiana	Rw1G040670 Rw3G020350

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	215
AclWI	GGATC	5 cut(s)	41, 54, 68, 175, 400
AcsI	RAATTY	1 cut(s)	365
AfaI	GTAC	1 cut(s)	23
AfiI	CCNNNNNNNGG	1 cut(s)	267
AflII	CTTAAG	1 cut(s)	310
AgsI	TTSAA	1 cut(s)	349
AluBI	AGCT	4 cut(s)	221, 329, 341, 407
AluI	AGCT	4 cut(s)	221, 329, 341, 407
Alw21I	GWGCWC	1 cut(s)	462
AlwI	GGATC	5 cut(s)	41, 54, 68, 175, 400
ApeKI	GCWGC	2 cut(s)	341, 373
ApoI	RAATTY	1 cut(s)	365
AspS9I	GGNCC	1 cut(s)	232
AsuC2I	CCSGG	1 cut(s)	287
AvaII	GGWCC	1 cut(s)	232
BamHI	GGATCC	1 cut(s)	46
Bbv12I	GWGCWC	1 cut(s)	462
BbvI	GCAGC	2 cut(s)	328, 385
BccI	CCATC	2 cut(s)	119, 243
BcnI	CCSGG	1 cut(s)	287
BfrI	CTTAAG	1 cut(s)	310
BisI	GCNGC	2 cut(s)	342, 374
BlsI	GCNGC	2 cut(s)	343, 375
Bme1390I	CCNGG	1 cut(s)	287
Bme18I	GGWCC	1 cut(s)	232
BmgT120I	GGNCC	1 cut(s)	232
BmiI	GGNNCC	1 cut(s)	48
BmrFI	CCNGG	1 cut(s)	287
BmsI	GCATC	1 cut(s)	414
BpuEI	CTTGAG	1 cut(s)	393
BpuMI	CCSGG	1 cut(s)	287
BsaJI	CCNNGG	1 cut(s)	261
Bsc4I	CCNNNNNNNGG	1 cut(s)	267
BseDI	CCNNGG	1 cut(s)	261
BseLI	CCNNNNNNNGG	1 cut(s)	267
BseXI	GCAGC	2 cut(s)	328, 385
BsiHKAI	GWGCWC	1 cut(s)	462
BsiSI	CCGG	1 cut(s)	287
BslI	CCNNNNNNNGG	1 cut(s)	267
BsmI	GAATGC	1 cut(s)	123
Bsp1286I	GDGCHC	1 cut(s)	462
Bsp143I	GATC	5 cut(s)	46, 73, 167, 392, 444
Bsp19I	CCATGG	1 cut(s)	261
BspLI	GGNNCC	1 cut(s)	48
BspPI	GGATC	5 cut(s)	41, 54, 68, 175, 400
BspTI	CTTAAG	1 cut(s)	310
BssECI	CCNNGG	1 cut(s)	261
BssMI	GATC	5 cut(s)	46, 73, 167, 392, 444
BssT1I	CCWWGG	1 cut(s)	261
BstAFI	CTTAAG	1 cut(s)	310
BstDSI	CCRYGG	1 cut(s)	261
BstKTI	GATC	5 cut(s)	49, 76, 170, 395, 447
BstMBI	GATC	5 cut(s)	46, 73, 167, 392, 444
BstSCI	CCNGG	1 cut(s)	285
BstV1I	GCAGC	2 cut(s)	328, 385
BstX2I	RGATCY	3 cut(s)	46, 73, 392
BstYI	RGATCY	3 cut(s)	46, 73, 392
BtgI	CCRYGG	1 cut(s)	261
Cfr13I	GGNCC	1 cut(s)	232
Csp6I	GTAC	1 cut(s)	22
CviAII	CATG	2 cut(s)	25, 262
CviJI	RGCY	8 cut(s)	110, 155, 205, 221, 329, 341, 407, 453
CviKI_1	RGCY	8 cut(s)	110, 155, 205, 221, 329, 341, 407, 453
CviQI	GTAC	1 cut(s)	22
DpnI	GATC	5 cut(s)	48, 75, 169, 394, 446
DpnII	GATC	5 cut(s)	46, 73, 167, 392, 444
DraI	TTTAAA	1 cut(s)	13
Eco130I	CCWWGG	1 cut(s)	261
Eco47I	GGWCC	1 cut(s)	232
EcoT14I	CCWWGG	1 cut(s)	261
ErhI	CCWWGG	1 cut(s)	261
FaeI	CATG	2 cut(s)	28, 265
FaiI	YATR	7 cut(s)	26, 94, 96, 186, 215, 247, 263
FatI	CATG	2 cut(s)	24, 261
Fnu4HI	GCNGC	2 cut(s)	342, 374
Fsp4HI	GCNGC	2 cut(s)	342, 374
GluI	GCNGC	2 cut(s)	342, 374
HapII	CCGG	1 cut(s)	287
Hin1II	CATG	2 cut(s)	28, 265
HpaII	CCGG	1 cut(s)	287
Hpy166II	GTNNAC	1 cut(s)	133
Hpy188I	TCNGA	1 cut(s)	326
Hpy188III	TCNNGA	3 cut(s)	268, 410, 437
Hpy8I	GTNNAC	1 cut(s)	133
HpyCH4V	TGCA	2 cut(s)	65, 427
Hsp92II	CATG	2 cut(s)	28, 265
Kzo9I	GATC	5 cut(s)	46, 73, 167, 392, 444
LmnI	GCTCC	1 cut(s)	457
LpnPI	CCDG	4 cut(s)	90, 137, 253, 300
Lsp1109I	GCAGC	2 cut(s)	328, 385
LweI	GCATC	1 cut(s)	414
MaeIII	GTNAC	1 cut(s)	100
MalI	GATC	5 cut(s)	48, 75, 169, 394, 446
MboI	GATC	5 cut(s)	46, 73, 167, 392, 444
MboII	GAAGA	1 cut(s)	150
MflI	RGATCY	3 cut(s)	46, 73, 392
MhlI	GDGCHC	1 cut(s)	462
MluCI	AATT	2 cut(s)	359, 365
MmeI	TCCRAC	2 cut(s)	285, 370
MnlI	CCTC	3 cut(s)	28, 219, 223
MseI	TTAA	3 cut(s)	12, 311, 362
MslI	CAYNNNNRTG	1 cut(s)	128
MspA1I	CMGCKG	1 cut(s)	341
MspCI	CTTAAG	1 cut(s)	310
MspI	CCGG	1 cut(s)	287
MspR9I	CCNGG	1 cut(s)	287
Mva1269I	GAATGC	1 cut(s)	123
NciI	CCSGG	1 cut(s)	287
NcoI	CCATGG	1 cut(s)	261
NdeII	GATC	5 cut(s)	46, 73, 167, 392, 444
NlaIII	CATG	2 cut(s)	28, 265
NlaIV	GGNNCC	1 cut(s)	48
PctI	GAATGC	1 cut(s)	123
PkrI	GCNGC	2 cut(s)	343, 375
PsiI	TTATAA	1 cut(s)	215
PspN4I	GGNNCC	1 cut(s)	48
PspPI	GGNCC	1 cut(s)	232
PsuI	RGATCY	3 cut(s)	46, 73, 392
PvuII	CAGCTG	1 cut(s)	341
RsaI	GTAC	1 cut(s)	23
RsaNI	GTAC	1 cut(s)	22
RseI	CAYNNNNRTG	1 cut(s)	128
SaqAI	TTAA	3 cut(s)	12, 311, 362
SatI	GCNGC	2 cut(s)	342, 374
Sau3AI	GATC	5 cut(s)	46, 73, 167, 392, 444
Sau96I	GGNCC	1 cut(s)	232
ScrFI	CCNGG	1 cut(s)	287
SduI	GDGCHC	1 cut(s)	462
SetI	ASST	6 cut(s)	23, 39, 223, 331, 343, 409
SfaNI	GCATC	1 cut(s)	414
SinI	GGWCC	1 cut(s)	232
SmiMI	CAYNNNNRTG	1 cut(s)	128
SmlI	CTYRAG	2 cut(s)	310, 408
SmoI	CTYRAG	2 cut(s)	310, 408
Sse9I	AATT	2 cut(s)	359, 365
StyD4I	CCNGG	1 cut(s)	285
StyI	CCWWGG	1 cut(s)	261
TaqI	TCGA	1 cut(s)	224
TasI	AATT	2 cut(s)	359, 365
Tru1I	TTAA	3 cut(s)	12, 311, 362
Tru9I	TTAA	3 cut(s)	12, 311, 362
TseI	GCWGC	2 cut(s)	341, 373
TspDTI	ATGAA	1 cut(s)	372
Vha464I	CTTAAG	1 cut(s)	310
VpaK11BI	GGWCC	1 cut(s)	232
XapI	RAATTY	1 cut(s)	365

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.