Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr07

Orthogroup ID

OG0007354

Physical Location & Seq

Genomic Coordinates Reverse (-)

36103454 .. 36106201

Gene Structure 2748 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD07G1303100.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 465 bp

ATGGTGGGATTTAAGAATAGGTATATGGTAGTGGAGGTTATCTTGGATCCTAATAGAGAACTGGTGAGAAAAGATCCTGTTATCATTACCTCGTACAATGTTATGAAAGCTATCCGAGACAGCATTCTAGTAAATTTTGGGGAGTGCGGTCTGGCTTCGTCACTTGGATCATTCCAAGTCAAGTATGTTAATGACATTACGAGGCTGTGTATCGTTAGAGCTTCAAGGGATGAATATCAGCGAGTATGGGCTGCAACTACAATGGTCAGGAGTATTGCAGATTGCCCGGTTCTATTTAATTTGTTGGACCTAATTGGAAGTATCAAAGCTTGTAAAGAAACCGCATTGAAGTGTGATGAATCAAAATTTGAACAGCACAAGCTTGTTGTTGGATCTAATCTTTCGGCTCAAGATACTCAAAAAATGCAGTACTATCTTGACAAGATCAAAGGCCTCGAGCACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0006464 GO:0006807 GO:0008150 GO:0008152 GO:0009249 GO:0009987 GO:0010467 GO:0018065 GO:0018193 GO:0018205 GO:0019538 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0051604 GO:0071704 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko03008 ko03013 map03008 map03013

Pfam Domains

Protein Families

RNase_P_Rpp14

Protein Analysis

155

Amino Acids

17.48

Weight (kDa)

8.58

Isoelectric Point (pI)

27.23

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RNase_P_Rpp14	PF01900	7 - 115	3.3e-28	Rpp14/Pop5 family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0007354)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G04635
fragaria_vesca	FvH4_7g33290
malus_domestica	MD01G1231100.v1.1 MD07G1302900.v1.1 MD07G1303100.v1.1
prunus_persica	Prupe.2G321800_v2.0.a1
pyrus_communis	pycom01g23910
rosa_chinensis	RchiOBHm_Chr1g0383271 RchiOBHm_Chr3g0479561
rosa_laevigata	RLG00000026117
rosa_multiflora	Rmu_sc0007173.1_g000022 Rmu_sc0014196.1_g000006 Rmu_sc0031164.1_g000002
rosa_roxburghii	Rroxscaffold_4G00277450
rosa_rugosa	Rorug01G0440000 Rorug01G0440100 Rorug01G0440200
rosa_samantha	Rh1AG465700 Rh1BG423100 Rh1CG436300 Rh1DG455800 Rh3AG227300 Rh3CG257700
rosa_wichuraiana	Rw1G040670 Rw3G020350

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	147, 342
AclWI	GGATC	5 cut(s)	41, 54, 68, 175, 400
AcsI	RAATTY	2 cut(s)	133, 365
AfaI	GTAC	2 cut(s)	95, 431
AgsI	TTSAA	3 cut(s)	225, 349, 371
AluBI	AGCT	4 cut(s)	110, 221, 329, 382
AluI	AGCT	4 cut(s)	110, 221, 329, 382
Alw21I	GWGCWC	1 cut(s)	462
Alw26I	GTCTC	1 cut(s)	111
AlwI	GGATC	5 cut(s)	41, 54, 68, 175, 400
Ama87I	CYCGRG	1 cut(s)	455
AoxI	GGCC	1 cut(s)	451
ApeKI	GCWGC	1 cut(s)	251
ApoI	RAATTY	2 cut(s)	133, 365
AspS9I	GGNCC	1 cut(s)	307
AsuC2I	CCSGG	1 cut(s)	287
AsuHPI	GGTGA	1 cut(s)	76
AvaI	CYCGRG	1 cut(s)	455
AvaII	GGWCC	1 cut(s)	307
BamHI	GGATCC	1 cut(s)	46
Bbv12I	GWGCWC	1 cut(s)	462
BbvI	GCAGC	1 cut(s)	238
BcnI	CCSGG	1 cut(s)	287
BcoDI	GTCTC	1 cut(s)	111
BfaI	CTAG	1 cut(s)	128
BisI	GCNGC	1 cut(s)	252
BlsI	GCNGC	1 cut(s)	253
BmcAI	AGTACT	1 cut(s)	431
Bme1390I	CCNGG	1 cut(s)	287
Bme18I	GGWCC	1 cut(s)	307
BmeT110I	CYCGRG	1 cut(s)	455
BmgT120I	GGNCC	1 cut(s)	307
BmiI	GGNNCC	1 cut(s)	48
BmrFI	CCNGG	1 cut(s)	287
BpuEI	CTTGAG	1 cut(s)	393
BpuMI	CCSGG	1 cut(s)	287
BsaBI	GATNNNNATC	1 cut(s)	234
Bse1I	ACTGG	1 cut(s)	66
Bse8I	GATNNNNATC	1 cut(s)	234
BseGI	GGATG	1 cut(s)	235
BseJI	GATNNNNATC	1 cut(s)	234
BseNI	ACTGG	1 cut(s)	66
BseXI	GCAGC	1 cut(s)	238
BshFI	GGCC	1 cut(s)	453
BsiHKAI	GWGCWC	1 cut(s)	462
BsiHKCI	CYCGRG	1 cut(s)	455
BsiSI	CCGG	1 cut(s)	287
BsmAI	GTCTC	1 cut(s)	111
BsmI	GAATGC	1 cut(s)	123
BsnI	GGCC	1 cut(s)	453
BsoBI	CYCGRG	1 cut(s)	455
Bsp1286I	GDGCHC	1 cut(s)	462
Bsp143I	GATC	5 cut(s)	46, 73, 167, 392, 444
BspACI	CCGC	2 cut(s)	147, 342
BspANI	GGCC	1 cut(s)	453
BspLI	GGNNCC	1 cut(s)	48
BspPI	GGATC	5 cut(s)	41, 54, 68, 175, 400
BsrI	ACTGG	1 cut(s)	66
BssMI	GATC	5 cut(s)	46, 73, 167, 392, 444
BstF5I	GGATG	1 cut(s)	235
BstKTI	GATC	5 cut(s)	49, 76, 170, 395, 447
BstMAI	GTCTC	1 cut(s)	111
BstMBI	GATC	5 cut(s)	46, 73, 167, 392, 444
BstSCI	CCNGG	1 cut(s)	285
BstV1I	GCAGC	1 cut(s)	238
BstX2I	RGATCY	3 cut(s)	46, 73, 392
BstYI	RGATCY	3 cut(s)	46, 73, 392
BsuRI	GGCC	1 cut(s)	453
BtsCI	GGATG	1 cut(s)	235
Cfr13I	GGNCC	1 cut(s)	307
Csp6I	GTAC	2 cut(s)	94, 430
CviJI	RGCY	9 cut(s)	110, 155, 205, 221, 251, 329, 382, 407, 453
CviKI_1	RGCY	9 cut(s)	110, 155, 205, 221, 251, 329, 382, 407, 453
CviQI	GTAC	2 cut(s)	94, 430
DpnI	GATC	5 cut(s)	48, 75, 169, 394, 446
DpnII	GATC	5 cut(s)	46, 73, 167, 392, 444
Eco147I	AGGCCT	1 cut(s)	453
Eco47I	GGWCC	1 cut(s)	307
Eco88I	CYCGRG	1 cut(s)	455
FaiI	YATR	5 cut(s)	24, 26, 104, 186, 247
Fnu4HI	GCNGC	1 cut(s)	252
FokI	GGATG	1 cut(s)	242
Fsp4HI	GCNGC	1 cut(s)	252
FspBI	CTAG	1 cut(s)	128
GluI	GCNGC	1 cut(s)	252
HaeIII	GGCC	1 cut(s)	453
HapII	CCGG	1 cut(s)	287
HindIII	AAGCTT	2 cut(s)	327, 380
HinfI	GANTC	1 cut(s)	359
HpaII	CCGG	1 cut(s)	287
HphI	GGTGA	1 cut(s)	76
Hpy188I	TCNGA	1 cut(s)	116
Hpy188III	TCNNGA	3 cut(s)	268, 410, 437
HpyCH4V	TGCA	3 cut(s)	254, 278, 427
Kzo9I	GATC	5 cut(s)	46, 73, 167, 392, 444
LpnPI	CCDG	5 cut(s)	47, 90, 137, 253, 300
Lsp1109I	GCAGC	1 cut(s)	238
MaeI	CTAG	1 cut(s)	128
MaeIII	GTNAC	1 cut(s)	159
MalI	GATC	5 cut(s)	48, 75, 169, 394, 446
MboI	GATC	5 cut(s)	46, 73, 167, 392, 444
MflI	RGATCY	3 cut(s)	46, 73, 392
MhlI	GDGCHC	1 cut(s)	462
MluCI	AATT	4 cut(s)	133, 298, 312, 365
MmeI	TCCRAC	2 cut(s)	285, 370
MnlI	CCTC	4 cut(s)	28, 100, 195, 464
MseI	TTAA	3 cut(s)	12, 189, 297
MslI	CAYNNNNRTG	1 cut(s)	349
MspI	CCGG	1 cut(s)	287
MspR9I	CCNGG	1 cut(s)	287
Mva1269I	GAATGC	1 cut(s)	123
NciI	CCSGG	1 cut(s)	287
NdeII	GATC	5 cut(s)	46, 73, 167, 392, 444
NlaIV	GGNNCC	1 cut(s)	48
NmuCI	GTSAC	1 cut(s)	159
PaeR7I	CTCGAG	1 cut(s)	455
PceI	AGGCCT	1 cut(s)	453
PctI	GAATGC	1 cut(s)	123
PfeI	GAWTC	1 cut(s)	359
PkrI	GCNGC	1 cut(s)	253
PspN4I	GGNNCC	1 cut(s)	48
PspPI	GGNCC	1 cut(s)	307
PspXI	VCTCGAGB	1 cut(s)	455
PsuI	RGATCY	3 cut(s)	46, 73, 392
RsaI	GTAC	2 cut(s)	95, 431
RsaNI	GTAC	2 cut(s)	94, 430
RseI	CAYNNNNRTG	1 cut(s)	349
SaqAI	TTAA	3 cut(s)	12, 189, 297
SatI	GCNGC	1 cut(s)	252
Sau3AI	GATC	5 cut(s)	46, 73, 167, 392, 444
Sau96I	GGNCC	1 cut(s)	307
ScaI	AGTACT	1 cut(s)	431
ScrFI	CCNGG	1 cut(s)	287
SduI	GDGCHC	1 cut(s)	462
SetI	ASST	8 cut(s)	23, 39, 92, 112, 223, 312, 331, 384
Sfr274I	CTCGAG	1 cut(s)	455
SinI	GGWCC	1 cut(s)	307
SlaI	CTCGAG	1 cut(s)	455
SmiMI	CAYNNNNRTG	1 cut(s)	349
SmlI	CTYRAG	2 cut(s)	408, 455
SmoI	CTYRAG	2 cut(s)	408, 455
Sse9I	AATT	4 cut(s)	133, 298, 312, 365
SseBI	AGGCCT	1 cut(s)	453
SsiI	CCGC	2 cut(s)	147, 342
SspMI	CTAG	1 cut(s)	128
StuI	AGGCCT	1 cut(s)	453
StyD4I	CCNGG	1 cut(s)	285
TaqI	TCGA	1 cut(s)	456
TasI	AATT	4 cut(s)	133, 298, 312, 365
TatI	WGTACW	1 cut(s)	429
TfiI	GAWTC	1 cut(s)	359
Tru1I	TTAA	3 cut(s)	12, 189, 297
Tru9I	TTAA	3 cut(s)	12, 189, 297
TseFI	GTSAC	1 cut(s)	159
TseI	GCWGC	1 cut(s)	251
Tsp45I	GTSAC	1 cut(s)	159
TspDTI	ATGAA	3 cut(s)	119, 246, 372
VpaK11BI	GGWCC	1 cut(s)	307
XapI	RAATTY	2 cut(s)	133, 365
XhoI	CTCGAG	1 cut(s)	455
XspI	CTAG	1 cut(s)	128
ZrmI	AGTACT	1 cut(s)	431

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.