Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000001

Orthogroup ID

OG0007354

Physical Location & Seq

Genomic Coordinates Reverse (-)

53846465 .. 53847736

Gene Structure 1272 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug01G0440000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 324 bp

ATGGAGTCGCACGTGCCCATCAGCTGGACGAACGAGAAGCATGTGCAGTTCTTGAACACCATGGAGGCTTCCTTTGTGTGTTCCATGATTGAAAACAAGGGTCGCCTTGCTCGTCTCGATCGTTACGTGCCGGACACCTCCGACTCGACCCTAGATCTGATCAAAACACCCCAGACAACCAAAAAATCTGGTCCGGTACGCAGAATGGACGGCGGAGCTCTCAGAAGAACAAGGAGATTACAGTCGCAACCGTTCATTTCTTCGCAGCTGGATCAGGTGGTTCCACAGTTTGAGATCGCAATGGTTGGTGATAAGGTCTTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0006464 GO:0006807 GO:0008150 GO:0008152 GO:0009249 GO:0009987 GO:0010467 GO:0018065 GO:0018193 GO:0018205 GO:0019538 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0051604 GO:0071704 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko03008 ko03013 map03008 map03013

Pfam Domains

Protein Families

RNase_P_Rpp14

Protein Analysis

107

Amino Acids

12.16

Weight (kDa)

9.35

Isoelectric Point (pI)

53.6

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007354)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G04635
fragaria_vesca	FvH4_7g33290
malus_domestica	MD01G1231100.v1.1 MD07G1302900.v1.1 MD07G1303100.v1.1
prunus_persica	Prupe.2G321800_v2.0.a1
pyrus_communis	pycom01g23910
rosa_chinensis	RchiOBHm_Chr1g0383271 RchiOBHm_Chr3g0479561
rosa_laevigata	RLG00000026117
rosa_multiflora	Rmu_sc0007173.1_g000022 Rmu_sc0014196.1_g000006 Rmu_sc0031164.1_g000002
rosa_roxburghii	Rroxscaffold_4G00277450
rosa_rugosa	Rorug01G0440000 Rorug01G0440100 Rorug01G0440200
rosa_samantha	Rh1AG465700 Rh1BG423100 Rh1CG436300 Rh1DG455800 Rh3AG227300 Rh3CG257700
rosa_wichuraiana	Rw1G040670 Rw3G020350

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	24
AciI	CCGC	1 cut(s)	213
AclWI	GGATC	1 cut(s)	279
AcvI	CACGTG	1 cut(s)	13
AfaI	GTAC	1 cut(s)	198
AfiI	CCNNNNNNNGG	1 cut(s)	24
AgsI	TTSAA	2 cut(s)	55, 92
AluBI	AGCT	3 cut(s)	24, 218, 268
AluI	AGCT	3 cut(s)	24, 218, 268
Alw21I	GWGCWC	1 cut(s)	220
Alw26I	GTCTC	1 cut(s)	119
AlwI	GGATC	1 cut(s)	279
ApeKI	GCWGC	1 cut(s)	265
AspS9I	GGNCC	1 cut(s)	191
AsuHPI	GGTGA	1 cut(s)	320
AvaII	GGWCC	1 cut(s)	191
BaeGI	GKGCMC	1 cut(s)	18
BanII	GRGCYC	1 cut(s)	220
BbrPI	CACGTG	1 cut(s)	13
Bbv12I	GWGCWC	1 cut(s)	220
BbvI	GCAGC	1 cut(s)	277
BccI	CCATC	1 cut(s)	26
BceAI	ACGGC	1 cut(s)	226
BclI	TGATCA	1 cut(s)	159
BcoDI	GTCTC	1 cut(s)	119
BfaI	CTAG	1 cut(s)	152
BglII	AGATCT	1 cut(s)	154
BisI	GCNGC	1 cut(s)	266
BlsI	GCNGC	1 cut(s)	267
Bme18I	GGWCC	1 cut(s)	191
BmgT120I	GGNCC	1 cut(s)	191
BmiI	GGNNCC	1 cut(s)	282
BsaAI	YACGTR	2 cut(s)	13, 127
BsaJI	CCNNGG	1 cut(s)	60
BsaWI	WCCGGW	1 cut(s)	193
Bsc4I	CCNNNNNNNGG	1 cut(s)	24
Bse3DI	GCAATG	1 cut(s)	306
BseDI	CCNNGG	1 cut(s)	60
BseLI	CCNNNNNNNGG	1 cut(s)	24
BseMI	GCAATG	1 cut(s)	306
BseMII	CTCAG	1 cut(s)	235
BseSI	GKGCMC	1 cut(s)	18
BseXI	GCAGC	1 cut(s)	277
BsgI	GTGCAG	1 cut(s)	65
Bsh1285I	CGRYCG	1 cut(s)	121
BsiEI	CGRYCG	1 cut(s)	121
BsiHKAI	GWGCWC	1 cut(s)	220
BsiSI	CCGG	2 cut(s)	131, 194
BslI	CCNNNNNNNGG	1 cut(s)	24
BsmAI	GTCTC	1 cut(s)	119
BsmBI	CGTCTC	1 cut(s)	119
Bsp1286I	GDGCHC	2 cut(s)	18, 220
Bsp143I	GATC	5 cut(s)	118, 154, 159, 271, 294
Bsp19I	CCATGG	1 cut(s)	60
BspACI	CCGC	1 cut(s)	213
BspCNI	CTCAG	1 cut(s)	234
BspLI	GGNNCC	1 cut(s)	282
BspPI	GGATC	1 cut(s)	279
BsrDI	GCAATG	1 cut(s)	306
BssECI	CCNNGG	1 cut(s)	60
BssMI	GATC	5 cut(s)	118, 154, 159, 271, 294
BssT1I	CCWWGG	1 cut(s)	60
Bst4CI	ACNGT	3 cut(s)	243, 252, 288
BstBAI	YACGTR	2 cut(s)	13, 127
BstDEI	CTNAG	1 cut(s)	221
BstDSI	CCRYGG	1 cut(s)	60
BstKTI	GATC	5 cut(s)	121, 157, 162, 274, 297
BstMAI	GTCTC	1 cut(s)	119
BstMBI	GATC	5 cut(s)	118, 154, 159, 271, 294
BstMCI	CGRYCG	1 cut(s)	121
BstNSI	RCATGY	1 cut(s)	44
BstSLI	GKGCMC	1 cut(s)	18
BstV1I	GCAGC	1 cut(s)	277
BstX2I	RGATCY	1 cut(s)	154
BstYI	RGATCY	1 cut(s)	154
BtgI	CCRYGG	1 cut(s)	60
Cfr13I	GGNCC	1 cut(s)	191
Csp6I	GTAC	1 cut(s)	197
CviAII	CATG	3 cut(s)	41, 61, 85
CviJI	RGCY	4 cut(s)	24, 68, 218, 268
CviKI_1	RGCY	4 cut(s)	24, 68, 218, 268
CviQI	GTAC	1 cut(s)	197
DdeI	CTNAG	1 cut(s)	221
DpnI	GATC	5 cut(s)	120, 156, 161, 273, 296
DpnII	GATC	5 cut(s)	118, 154, 159, 271, 294
EciI	GGCGGA	1 cut(s)	228
Ecl136II	GAGCTC	1 cut(s)	218
Eco130I	CCWWGG	1 cut(s)	60
Eco24I	GRGCYC	1 cut(s)	220
Eco47I	GGWCC	1 cut(s)	191
Eco53kI	GAGCTC	1 cut(s)	218
Eco72I	CACGTG	1 cut(s)	13
EcoICRI	GAGCTC	1 cut(s)	218
EcoT14I	CCWWGG	1 cut(s)	60
EcoT38I	GRGCYC	1 cut(s)	220
ErhI	CCWWGG	1 cut(s)	60
Esp3I	CGTCTC	1 cut(s)	119
FaeI	CATG	3 cut(s)	44, 64, 88
FaiI	YATR	4 cut(s)	42, 62, 86, 322
FatI	CATG	3 cut(s)	40, 60, 84
FbaI	TGATCA	1 cut(s)	159
Fnu4HI	GCNGC	1 cut(s)	266
FriOI	GRGCYC	1 cut(s)	220
Fsp4HI	GCNGC	1 cut(s)	266
FspBI	CTAG	1 cut(s)	152
GluI	GCNGC	1 cut(s)	266
HapII	CCGG	2 cut(s)	131, 194
Hin1II	CATG	3 cut(s)	44, 64, 88
HinfI	GANTC	2 cut(s)	5, 143
HpaII	CCGG	2 cut(s)	131, 194
HphI	GGTGA	1 cut(s)	320
Hpy188I	TCNGA	3 cut(s)	142, 159, 224
Hpy188III	TCNNGA	2 cut(s)	52, 116
HpyCH4III	ACNGT	3 cut(s)	243, 252, 288
HpyCH4IV	ACGT	2 cut(s)	12, 126
HpyCH4V	TGCA	1 cut(s)	46
HpyF3I	CTNAG	1 cut(s)	221
HpySE526I	ACGT	2 cut(s)	12, 126
Hsp92II	CATG	3 cut(s)	44, 64, 88
Ksp22I	TGATCA	1 cut(s)	159
Kzo9I	GATC	5 cut(s)	118, 154, 159, 271, 294
LmnI	GCTCC	1 cut(s)	215
LpnPI	CCDG	7 cut(s)	10, 144, 174, 185, 207, 254, 260
Lsp1109I	GCAGC	1 cut(s)	277
MaeI	CTAG	1 cut(s)	152
MaeII	ACGT	2 cut(s)	12, 126
MaeIII	GTNAC	1 cut(s)	122
MalI	GATC	5 cut(s)	120, 156, 161, 273, 296
MboI	GATC	5 cut(s)	118, 154, 159, 271, 294
MboII	GAAGA	2 cut(s)	237, 252
MflI	RGATCY	1 cut(s)	154
MhlI	GDGCHC	2 cut(s)	18, 220
MlyI	GAGTC	2 cut(s)	14, 137
MmeI	TCCRAC	1 cut(s)	165
MnlI	CCTC	2 cut(s)	58, 148
MspA1I	CMGCKG	2 cut(s)	24, 268
MspI	CCGG	2 cut(s)	131, 194
NcoI	CCATGG	1 cut(s)	60
NdeII	GATC	5 cut(s)	118, 154, 159, 271, 294
NlaIII	CATG	3 cut(s)	44, 64, 88
NlaIV	GGNNCC	1 cut(s)	282
NspI	RCATGY	1 cut(s)	44
PcsI	WCGNNNNNNNCGW	3 cut(s)	109, 118, 123
PflMI	CCANNNNNTGG	1 cut(s)	24
PkrI	GCNGC	1 cut(s)	267
Ple19I	CGATCG	1 cut(s)	121
PleI	GAGTC	2 cut(s)	13, 137
PmaCI	CACGTG	1 cut(s)	13
PmlI	CACGTG	1 cut(s)	13
PpsI	GAGTC	2 cut(s)	13, 137
Ppu21I	YACGTR	2 cut(s)	13, 127
Psp124BI	GAGCTC	1 cut(s)	220
PspCI	CACGTG	1 cut(s)	13
PspN4I	GGNNCC	1 cut(s)	282
PspPI	GGNCC	1 cut(s)	191
PsuI	RGATCY	1 cut(s)	154
PvuI	CGATCG	1 cut(s)	121
PvuII	CAGCTG	2 cut(s)	24, 268
RsaI	GTAC	1 cut(s)	198
RsaNI	GTAC	1 cut(s)	197
SacI	GAGCTC	1 cut(s)	220
SatI	GCNGC	1 cut(s)	266
Sau3AI	GATC	5 cut(s)	118, 154, 159, 271, 294
Sau96I	GGNCC	1 cut(s)	191
SchI	GAGTC	2 cut(s)	14, 137
SduI	GDGCHC	2 cut(s)	18, 220
SetI	ASST	8 cut(s)	15, 26, 129, 140, 220, 270, 279, 318
SinI	GGWCC	1 cut(s)	191
SsiI	CCGC	1 cut(s)	213
SspMI	CTAG	1 cut(s)	152
SstI	GAGCTC	1 cut(s)	220
StyI	CCWWGG	1 cut(s)	60
TaaI	ACNGT	3 cut(s)	243, 252, 288
TaiI	ACGT	2 cut(s)	15, 129
TaqI	TCGA	2 cut(s)	117, 146
TseI	GCWGC	1 cut(s)	265
TspDTI	ATGAA	1 cut(s)	244
Van91I	CCANNNNNTGG	1 cut(s)	24
VpaK11BI	GGWCC	1 cut(s)	191
XceI	RCATGY	1 cut(s)	44
XspI	CTAG	1 cut(s)	152

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.