Rh1BG423100

Ribonuclease P MRP protein subunit

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1B
OG0007354
Physical Location & Seq
Reverse (-)
54250657 .. 54257337
6681 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1BG423100.1

Sequence Viewer

Length: 360 bp
ATGGTGGGATTTAAAAATAGGTACATGACATTGGAGGTTATCTTGGATCCGAATAAAGAACTTGCAAAGAAAGATCCTGTTATCATTACCACATATAATGTTACAAAAGCCATCAAAGATAGCATTCTTGTGAACTTTGGGGAGTGTGGTCTGGCTTCTTCACTTGGATCGTTCCAAGTGAAGTATGTCAATGAGATTACAAGGCTTTGTATCATAAGAGCTTCGAGGGAGGACCATCAAAAAGTATGGTCTGCTATTACCATGGTCAGGAGTATTGCTGATTGCCCGGTGATTTTTAATTTGTTGGACTTAAGTGGTGAGTTAAACAACCTCAATAGAGTAACTCTTATGATATGCTGA

Protein Analysis

119

Amino Acids

13.39

Weight (kDa)

8.39

Isoelectric Point (pI)

29.34

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RNase_P_Rpp14 PF01900 7 - 110 2.9e-26 Rpp14/Pop5 family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 4 cut(s) 41, 54, 68, 175
AfaI GTAC 1 cut(s) 23
AfiI CCNNNNNNNGG 1 cut(s) 267
AflII CTTAAG 1 cut(s) 310
AluBI AGCT 1 cut(s) 221
AluI AGCT 1 cut(s) 221
AlwI GGATC 4 cut(s) 41, 54, 68, 175
AspS9I GGNCC 1 cut(s) 232
AsuC2I CCSGG 1 cut(s) 287
AsuHPI GGTGA 2 cut(s) 301, 329
AvaII GGWCC 1 cut(s) 232
BamHI GGATCC 1 cut(s) 46
BccI CCATC 2 cut(s) 119, 243
BcnI CCSGG 1 cut(s) 287
BfrI CTTAAG 1 cut(s) 310
Bme1390I CCNGG 1 cut(s) 287
Bme18I GGWCC 1 cut(s) 232
BmgT120I GGNCC 1 cut(s) 232
BmiI GGNNCC 1 cut(s) 48
BmrFI CCNGG 1 cut(s) 287
BpuMI CCSGG 1 cut(s) 287
BsaJI CCNNGG 1 cut(s) 261
Bsc4I CCNNNNNNNGG 1 cut(s) 267
BseDI CCNNGG 1 cut(s) 261
BseLI CCNNNNNNNGG 1 cut(s) 267
BsiSI CCGG 1 cut(s) 287
BslI CCNNNNNNNGG 1 cut(s) 267
BsmI GAATGC 1 cut(s) 123
Bsp143I GATC 3 cut(s) 46, 73, 167
Bsp19I CCATGG 1 cut(s) 261
BspLI GGNNCC 1 cut(s) 48
BspPI GGATC 4 cut(s) 41, 54, 68, 175
BspTI CTTAAG 1 cut(s) 310
BssECI CCNNGG 1 cut(s) 261
BssMI GATC 3 cut(s) 46, 73, 167
BssT1I CCWWGG 1 cut(s) 261
BstAFI CTTAAG 1 cut(s) 310
BstDSI CCRYGG 1 cut(s) 261
BstKTI GATC 3 cut(s) 49, 76, 170
BstMBI GATC 3 cut(s) 46, 73, 167
BstSCI CCNGG 1 cut(s) 285
BstX2I RGATCY 2 cut(s) 46, 73
BstYI RGATCY 2 cut(s) 46, 73
BtgI CCRYGG 1 cut(s) 261
Cfr13I GGNCC 1 cut(s) 232
Csp6I GTAC 1 cut(s) 22
CviAII CATG 2 cut(s) 25, 262
CviJI RGCY 4 cut(s) 110, 155, 205, 221
CviKI_1 RGCY 4 cut(s) 110, 155, 205, 221
CviQI GTAC 1 cut(s) 22
DpnI GATC 3 cut(s) 48, 75, 169
DpnII GATC 3 cut(s) 46, 73, 167
DraI TTTAAA 1 cut(s) 13
Eco130I CCWWGG 1 cut(s) 261
Eco47I GGWCC 1 cut(s) 232
EcoT14I CCWWGG 1 cut(s) 261
ErhI CCWWGG 1 cut(s) 261
FaeI CATG 2 cut(s) 28, 265
FaiI YATR 9 cut(s) 26, 94, 96, 186, 215, 247, 263, 350, 355
FatI CATG 2 cut(s) 24, 261
HapII CCGG 1 cut(s) 287
Hin1II CATG 2 cut(s) 28, 265
HpaII CCGG 1 cut(s) 287
HphI GGTGA 2 cut(s) 301, 329
Hpy166II GTNNAC 1 cut(s) 133
Hpy188I TCNGA 1 cut(s) 51
Hpy188III TCNNGA 1 cut(s) 268
Hpy8I GTNNAC 1 cut(s) 133
HpyCH4V TGCA 1 cut(s) 65
Hsp92II CATG 2 cut(s) 28, 265
Kzo9I GATC 3 cut(s) 46, 73, 167
LpnPI CCDG 4 cut(s) 90, 137, 253, 300
MaeIII GTNAC 2 cut(s) 100, 340
MalI GATC 3 cut(s) 48, 75, 169
MboI GATC 3 cut(s) 46, 73, 167
MboII GAAGA 1 cut(s) 150
MflI RGATCY 2 cut(s) 46, 73
MluCI AATT 1 cut(s) 298
MmeI TCCRAC 1 cut(s) 285
MnlI CCTC 4 cut(s) 28, 219, 223, 341
MseI TTAA 4 cut(s) 12, 297, 311, 323
MslI CAYNNNNRTG 1 cut(s) 128
MspCI CTTAAG 1 cut(s) 310
MspI CCGG 1 cut(s) 287
MspR9I CCNGG 1 cut(s) 287
Mva1269I GAATGC 1 cut(s) 123
NciI CCSGG 1 cut(s) 287
NcoI CCATGG 1 cut(s) 261
NdeII GATC 3 cut(s) 46, 73, 167
NlaIII CATG 2 cut(s) 28, 265
NlaIV GGNNCC 1 cut(s) 48
PctI GAATGC 1 cut(s) 123
PspN4I GGNNCC 1 cut(s) 48
PspPI GGNCC 1 cut(s) 232
PsuI RGATCY 2 cut(s) 46, 73
RsaI GTAC 1 cut(s) 23
RsaNI GTAC 1 cut(s) 22
RseI CAYNNNNRTG 1 cut(s) 128
SaqAI TTAA 4 cut(s) 12, 297, 311, 323
Sau3AI GATC 3 cut(s) 46, 73, 167
Sau96I GGNCC 1 cut(s) 232
ScrFI CCNGG 1 cut(s) 287
SetI ASST 4 cut(s) 23, 39, 223, 333
SinI GGWCC 1 cut(s) 232
SmiMI CAYNNNNRTG 1 cut(s) 128
SmlI CTYRAG 1 cut(s) 310
SmoI CTYRAG 1 cut(s) 310
Sse9I AATT 1 cut(s) 298
StyD4I CCNGG 1 cut(s) 285
StyI CCWWGG 1 cut(s) 261
TaqI TCGA 1 cut(s) 224
TasI AATT 1 cut(s) 298
Tru1I TTAA 4 cut(s) 12, 297, 311, 323
Tru9I TTAA 4 cut(s) 12, 297, 311, 323
Vha464I CTTAAG 1 cut(s) 310
VpaK11BI GGWCC 1 cut(s) 232
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.