Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp02

Orthogroup ID

OG0007354

Physical Location & Seq

Genomic Coordinates Reverse (-)

29896245 .. 29899120

Gene Structure 2876 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.2G321800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 465 bp

ATGGTGGGATTTAAGAATAGGTATATGGTATTGGAGGTTATCTTGGATCCTAATAGAGAGCTGGTGAGAAAAGATCCTGTTATAATTACCTCATATAATGTTACAAACGCTATCAAAGACAGCATTCTTGAAAATTTTGGGAAGTGTGGTCTGGCTTCATTGTTTGGATCATTCCTAGTGAAGTATGTAAATGACATTACAAGGCTGTGTATCATTAGAGCTTCAAGGGAGGAATATCAAAAAGTATGGTCTGCAGTTACTATGGTCAGGAGTATTGCAGGGTGCCCGGTGCTATTTAATTTGTTGGACCTAAGTGGAAGCATCAAAGCTTGTAAAAAAGCTGCCTTGAAGTGTGATGAACTAAAATTTGAGCAGCACAAGATTGCGGTTGGATCTAATCTTTCAGCTCAAGATACTCAAAAAATGCAGAACTATCTTGACAAGATCAAAGGCCTGGAGCACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0006464 GO:0006807 GO:0008150 GO:0008152 GO:0009249 GO:0009987 GO:0010467 GO:0018065 GO:0018193 GO:0018205 GO:0019538 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0051604 GO:0071704 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko03008 ko03013 map03008 map03013

Pfam Domains

Protein Families

RNase_P_Rpp14

Protein Analysis

155

Amino Acids

17.35

Weight (kDa)

9.1

Isoelectric Point (pI)

22.45

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007354)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G04635
fragaria_vesca	FvH4_7g33290
malus_domestica	MD01G1231100.v1.1 MD07G1302900.v1.1 MD07G1303100.v1.1
prunus_persica	Prupe.2G321800_v2.0.a1
pyrus_communis	pycom01g23910
rosa_chinensis	RchiOBHm_Chr1g0383271 RchiOBHm_Chr3g0479561
rosa_laevigata	RLG00000026117
rosa_multiflora	Rmu_sc0007173.1_g000022 Rmu_sc0014196.1_g000006 Rmu_sc0031164.1_g000002
rosa_roxburghii	Rroxscaffold_4G00277450
rosa_rugosa	Rorug01G0440000 Rorug01G0440100 Rorug01G0440200
rosa_samantha	Rh1AG465700 Rh1BG423100 Rh1CG436300 Rh1DG455800 Rh3AG227300 Rh3CG257700
rosa_wichuraiana	Rw1G040670 Rw3G020350

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	83
AccB1I	GGYRCC	1 cut(s)	282
AciI	CCGC	1 cut(s)	386
AclWI	GGATC	5 cut(s)	41, 54, 68, 175, 400
AcsI	RAATTY	2 cut(s)	133, 365
AgsI	TTSAA	3 cut(s)	131, 225, 349
AjnI	CCWGG	1 cut(s)	453
AluBI	AGCT	5 cut(s)	61, 221, 329, 341, 407
AluI	AGCT	5 cut(s)	61, 221, 329, 341, 407
Alw21I	GWGCWC	1 cut(s)	462
AlwI	GGATC	5 cut(s)	41, 54, 68, 175, 400
AoxI	GGCC	1 cut(s)	451
ApeKI	GCWGC	2 cut(s)	341, 373
ApoI	RAATTY	2 cut(s)	133, 365
AspS9I	GGNCC	1 cut(s)	307
AsuC2I	CCSGG	1 cut(s)	287
AsuHPI	GGTGA	1 cut(s)	76
AvaII	GGWCC	1 cut(s)	307
BaeGI	GKGCMC	1 cut(s)	287
BamHI	GGATCC	1 cut(s)	46
BanI	GGYRCC	1 cut(s)	282
Bbv12I	GWGCWC	1 cut(s)	462
BbvI	GCAGC	2 cut(s)	328, 385
BciT130I	CCWGG	1 cut(s)	455
BcnI	CCSGG	1 cut(s)	287
BfaI	CTAG	1 cut(s)	176
BfmI	CTRYAG	1 cut(s)	252
BisI	GCNGC	2 cut(s)	342, 374
BlsI	GCNGC	2 cut(s)	343, 375
Bme1390I	CCNGG	2 cut(s)	287, 455
Bme18I	GGWCC	1 cut(s)	307
BmgT120I	GGNCC	1 cut(s)	307
BmiI	GGNNCC	2 cut(s)	48, 284
BmrFI	CCNGG	2 cut(s)	287, 455
BmsI	GCATC	1 cut(s)	330
BpuEI	CTTGAG	1 cut(s)	393
BpuMI	CCSGG	1 cut(s)	287
BseBI	CCWGG	1 cut(s)	455
BseSI	GKGCMC	1 cut(s)	287
BseXI	GCAGC	2 cut(s)	328, 385
BshFI	GGCC	1 cut(s)	453
BshNI	GGYRCC	1 cut(s)	282
BsiHKAI	GWGCWC	1 cut(s)	462
BsiSI	CCGG	1 cut(s)	287
BsmI	GAATGC	1 cut(s)	123
BsnI	GGCC	1 cut(s)	453
Bsp1286I	GDGCHC	2 cut(s)	287, 462
Bsp143I	GATC	5 cut(s)	46, 73, 167, 392, 444
BspACI	CCGC	1 cut(s)	386
BspANI	GGCC	1 cut(s)	453
BspLI	GGNNCC	2 cut(s)	48, 284
BspMAI	CTGCAG	1 cut(s)	256
BspPI	GGATC	5 cut(s)	41, 54, 68, 175, 400
BspT107I	GGYRCC	1 cut(s)	282
BssMI	GATC	5 cut(s)	46, 73, 167, 392, 444
Bst2UI	CCWGG	1 cut(s)	455
BstDEI	CTNAG	1 cut(s)	311
BstKTI	GATC	5 cut(s)	49, 76, 170, 395, 447
BstMBI	GATC	5 cut(s)	46, 73, 167, 392, 444
BstNI	CCWGG	1 cut(s)	455
BstSCI	CCNGG	2 cut(s)	285, 453
BstSFI	CTRYAG	1 cut(s)	252
BstSLI	GKGCMC	1 cut(s)	287
BstV1I	GCAGC	2 cut(s)	328, 385
BstX2I	RGATCY	3 cut(s)	46, 73, 392
BstYI	RGATCY	3 cut(s)	46, 73, 392
BsuRI	GGCC	1 cut(s)	453
Cfr13I	GGNCC	1 cut(s)	307
CviJI	RGCY	8 cut(s)	61, 155, 205, 221, 329, 341, 407, 453
CviKI_1	RGCY	8 cut(s)	61, 155, 205, 221, 329, 341, 407, 453
DdeI	CTNAG	1 cut(s)	311
DpnI	GATC	5 cut(s)	48, 75, 169, 394, 446
DpnII	GATC	5 cut(s)	46, 73, 167, 392, 444
Eco147I	AGGCCT	1 cut(s)	453
Eco47I	GGWCC	1 cut(s)	307
EcoRII	CCWGG	1 cut(s)	453
FaiI	YATR	8 cut(s)	24, 26, 83, 94, 96, 186, 247, 263
Fnu4HI	GCNGC	2 cut(s)	342, 374
Fsp4HI	GCNGC	2 cut(s)	342, 374
FspBI	CTAG	1 cut(s)	176
GluI	GCNGC	2 cut(s)	342, 374
HaeIII	GGCC	1 cut(s)	453
HapII	CCGG	1 cut(s)	287
HindIII	AAGCTT	1 cut(s)	327
HpaII	CCGG	1 cut(s)	287
HphI	GGTGA	1 cut(s)	76
Hpy188III	TCNNGA	4 cut(s)	128, 268, 410, 437
HpyCH4V	TGCA	3 cut(s)	254, 278, 427
HpyF3I	CTNAG	1 cut(s)	311
Kzo9I	GATC	5 cut(s)	46, 73, 167, 392, 444
LmnI	GCTCC	1 cut(s)	457
LpnPI	CCDG	7 cut(s)	47, 90, 137, 253, 264, 300, 440
Lsp1109I	GCAGC	2 cut(s)	328, 385
LweI	GCATC	1 cut(s)	330
MaeI	CTAG	1 cut(s)	176
MaeIII	GTNAC	2 cut(s)	100, 256
MalI	GATC	5 cut(s)	48, 75, 169, 394, 446
MboI	GATC	5 cut(s)	46, 73, 167, 392, 444
MflI	RGATCY	3 cut(s)	46, 73, 392
MhlI	GDGCHC	2 cut(s)	287, 462
MluCI	AATT	4 cut(s)	84, 133, 298, 365
MmeI	TCCRAC	2 cut(s)	285, 370
MnlI	CCTC	3 cut(s)	28, 100, 223
MseI	TTAA	2 cut(s)	12, 297
MspI	CCGG	1 cut(s)	287
MspR9I	CCNGG	2 cut(s)	287, 455
Mva1269I	GAATGC	1 cut(s)	123
MvaI	CCWGG	1 cut(s)	455
NciI	CCSGG	1 cut(s)	287
NdeII	GATC	5 cut(s)	46, 73, 167, 392, 444
NlaIV	GGNNCC	2 cut(s)	48, 284
PceI	AGGCCT	1 cut(s)	453
PctI	GAATGC	1 cut(s)	123
PkrI	GCNGC	2 cut(s)	343, 375
PsiI	TTATAA	1 cut(s)	83
Psp6I	CCWGG	1 cut(s)	453
PspGI	CCWGG	1 cut(s)	453
PspN4I	GGNNCC	2 cut(s)	48, 284
PspPI	GGNCC	1 cut(s)	307
PstI	CTGCAG	1 cut(s)	256
PsuI	RGATCY	3 cut(s)	46, 73, 392
SaqAI	TTAA	2 cut(s)	12, 297
SatI	GCNGC	2 cut(s)	342, 374
Sau3AI	GATC	5 cut(s)	46, 73, 167, 392, 444
Sau96I	GGNCC	1 cut(s)	307
ScrFI	CCNGG	2 cut(s)	287, 455
SduI	GDGCHC	2 cut(s)	287, 462
SetI	ASST	9 cut(s)	23, 39, 63, 92, 223, 312, 331, 343, 409
SfaNI	GCATC	1 cut(s)	330
SfcI	CTRYAG	1 cut(s)	252
SinI	GGWCC	1 cut(s)	307
SmlI	CTYRAG	1 cut(s)	408
SmoI	CTYRAG	1 cut(s)	408
Sse9I	AATT	4 cut(s)	84, 133, 298, 365
SseBI	AGGCCT	1 cut(s)	453
SsiI	CCGC	1 cut(s)	386
SspMI	CTAG	1 cut(s)	176
StuI	AGGCCT	1 cut(s)	453
StyD4I	CCNGG	2 cut(s)	285, 453
TasI	AATT	4 cut(s)	84, 133, 298, 365
Tru1I	TTAA	2 cut(s)	12, 297
Tru9I	TTAA	2 cut(s)	12, 297
TseI	GCWGC	2 cut(s)	341, 373
TspDTI	ATGAA	2 cut(s)	147, 372
VpaK11BI	GGWCC	1 cut(s)	307
XapI	RAATTY	2 cut(s)	133, 365
XspI	CTAG	1 cut(s)	176

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.