Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb7

Orthogroup ID

OG0007354

Physical Location & Seq

Genomic Coordinates Reverse (-)

23704531 .. 23707714

Gene Structure 3184 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_7g33290.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 465 bp

ATGGTGGGATTCAAGAATAGGTATATGACATTGGAGGTTATCTTGGATCCAAATAAAGAACTTGCAAAGAAAGATCCTGTTATCATTACCACATATAATGTAACAAAAGCAGTCAAAGATAGCATTCTAGTGAACTTTGGGGAGTGTGGTCTGGCTTCTTCACTTGGATCGTTCCAAGTCAAGTATGTCAATGAGATTACAAGGGTTTGTATCGTAAGAGCCTCAAGGGAGGACCATCAAAAGGTATGGTCAGCAATTACCATGGTCAGGAGTATTGCAGATTGCCCGGTGATTTTTAATTTGTTGGACTTAAGCGGAAGTATCAGAGCTTGTAGAACAGCTGCCTTGAAATGTGATGAATTAAAATTTGAGCAGTACAAGCTTGTTGTTGGATCTAATCTTTCAGCTCAAGATACTCAAAAGATGCAGTTCTATCTTGACAAAATCAAAGGCTTGGAGCACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0006464 GO:0006807 GO:0008150 GO:0008152 GO:0009249 GO:0009987 GO:0010467 GO:0018065 GO:0018193 GO:0018205 GO:0019538 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0051604 GO:0071704 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko03008 ko03013 map03008 map03013

Pfam Domains

Protein Families

RNase_P_Rpp14

Protein Analysis

155

Amino Acids

17.34

Weight (kDa)

8.79

Isoelectric Point (pI)

28.81

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RNase_P_Rpp14	PF01900	7 - 115	3.7e-29	Rpp14/Pop5 family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007354)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G04635
fragaria_vesca	FvH4_7g33290
malus_domestica	MD01G1231100.v1.1 MD07G1302900.v1.1 MD07G1303100.v1.1
prunus_persica	Prupe.2G321800_v2.0.a1
pyrus_communis	pycom01g23910
rosa_chinensis	RchiOBHm_Chr1g0383271 RchiOBHm_Chr3g0479561
rosa_laevigata	RLG00000026117
rosa_multiflora	Rmu_sc0007173.1_g000022 Rmu_sc0014196.1_g000006 Rmu_sc0031164.1_g000002
rosa_roxburghii	Rroxscaffold_4G00277450
rosa_rugosa	Rorug01G0440000 Rorug01G0440100 Rorug01G0440200
rosa_samantha	Rh1AG465700 Rh1BG423100 Rh1CG436300 Rh1DG455800 Rh3AG227300 Rh3CG257700
rosa_wichuraiana	Rw1G040670 Rw3G020350

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	315
AclWI	GGATC	5 cut(s)	41, 54, 68, 175, 400
AcsI	RAATTY	1 cut(s)	365
AfaI	GTAC	1 cut(s)	377
AfiI	CCNNNNNNNGG	2 cut(s)	241, 267
AflII	CTTAAG	1 cut(s)	310
AgsI	TTSAA	2 cut(s)	13, 349
AluBI	AGCT	4 cut(s)	329, 341, 382, 407
AluI	AGCT	4 cut(s)	329, 341, 382, 407
Alw21I	GWGCWC	1 cut(s)	462
AlwI	GGATC	5 cut(s)	41, 54, 68, 175, 400
ApeKI	GCWGC	1 cut(s)	341
ApoI	RAATTY	1 cut(s)	365
AspS9I	GGNCC	1 cut(s)	232
AsuC2I	CCSGG	1 cut(s)	287
AsuHPI	GGTGA	1 cut(s)	301
AvaII	GGWCC	1 cut(s)	232
BamHI	GGATCC	1 cut(s)	46
Bbv12I	GWGCWC	1 cut(s)	462
BbvI	GCAGC	1 cut(s)	328
BccI	CCATC	1 cut(s)	243
BcnI	CCSGG	1 cut(s)	287
BfaI	CTAG	1 cut(s)	128
BfrI	CTTAAG	1 cut(s)	310
BisI	GCNGC	1 cut(s)	342
BlsI	GCNGC	1 cut(s)	343
Bme1390I	CCNGG	1 cut(s)	287
Bme18I	GGWCC	1 cut(s)	232
BmgT120I	GGNCC	1 cut(s)	232
BmiI	GGNNCC	1 cut(s)	48
BmrFI	CCNGG	1 cut(s)	287
BmsI	GCATC	1 cut(s)	414
BpuEI	CTTGAG	2 cut(s)	208, 393
BpuMI	CCSGG	1 cut(s)	287
BsaJI	CCNNGG	1 cut(s)	261
Bsc4I	CCNNNNNNNGG	2 cut(s)	241, 267
BseDI	CCNNGG	1 cut(s)	261
BseLI	CCNNNNNNNGG	2 cut(s)	241, 267
BseXI	GCAGC	1 cut(s)	328
BsiHKAI	GWGCWC	1 cut(s)	462
BsiSI	CCGG	1 cut(s)	287
BslI	CCNNNNNNNGG	2 cut(s)	241, 267
BsmI	GAATGC	1 cut(s)	123
Bsp1286I	GDGCHC	1 cut(s)	462
Bsp143I	GATC	4 cut(s)	46, 73, 167, 392
Bsp19I	CCATGG	1 cut(s)	261
BspACI	CCGC	1 cut(s)	315
BspLI	GGNNCC	1 cut(s)	48
BspPI	GGATC	5 cut(s)	41, 54, 68, 175, 400
BspTI	CTTAAG	1 cut(s)	310
BssECI	CCNNGG	1 cut(s)	261
BssMI	GATC	4 cut(s)	46, 73, 167, 392
BssT1I	CCWWGG	1 cut(s)	261
BstAFI	CTTAAG	1 cut(s)	310
BstDSI	CCRYGG	1 cut(s)	261
BstKTI	GATC	4 cut(s)	49, 76, 170, 395
BstMBI	GATC	4 cut(s)	46, 73, 167, 392
BstMWI	GCNNNNNNNGC	1 cut(s)	379
BstSCI	CCNGG	1 cut(s)	285
BstV1I	GCAGC	1 cut(s)	328
BstX2I	RGATCY	3 cut(s)	46, 73, 392
BstYI	RGATCY	3 cut(s)	46, 73, 392
BtgI	CCRYGG	1 cut(s)	261
BtsIMutI	CAGTG	1 cut(s)	460
Cfr13I	GGNCC	1 cut(s)	232
Csp6I	GTAC	1 cut(s)	376
CviAII	CATG	1 cut(s)	262
CviJI	RGCY	7 cut(s)	155, 221, 329, 341, 382, 407, 453
CviKI_1	RGCY	7 cut(s)	155, 221, 329, 341, 382, 407, 453
CviQI	GTAC	1 cut(s)	376
DpnI	GATC	4 cut(s)	48, 75, 169, 394
DpnII	GATC	4 cut(s)	46, 73, 167, 392
Eco130I	CCWWGG	1 cut(s)	261
Eco47I	GGWCC	1 cut(s)	232
EcoT14I	CCWWGG	1 cut(s)	261
ErhI	CCWWGG	1 cut(s)	261
FaeI	CATG	1 cut(s)	265
FaiI	YATR	7 cut(s)	24, 26, 94, 96, 186, 247, 263
FatI	CATG	1 cut(s)	261
Fnu4HI	GCNGC	1 cut(s)	342
Fsp4HI	GCNGC	1 cut(s)	342
FspBI	CTAG	1 cut(s)	128
GluI	GCNGC	1 cut(s)	342
HapII	CCGG	1 cut(s)	287
Hin1II	CATG	1 cut(s)	265
HindIII	AAGCTT	1 cut(s)	380
HinfI	GANTC	1 cut(s)	9
HpaII	CCGG	1 cut(s)	287
HphI	GGTGA	1 cut(s)	301
Hpy166II	GTNNAC	1 cut(s)	133
Hpy188I	TCNGA	1 cut(s)	326
Hpy188III	TCNNGA	4 cut(s)	13, 268, 410, 437
Hpy8I	GTNNAC	1 cut(s)	133
HpyCH4V	TGCA	3 cut(s)	65, 278, 427
HpyF10VI	GCNNNNNNNGC	1 cut(s)	379
Hsp92II	CATG	1 cut(s)	265
Kzo9I	GATC	4 cut(s)	46, 73, 167, 392
LmnI	GCTCC	1 cut(s)	457
LpnPI	CCDG	4 cut(s)	90, 137, 253, 300
Lsp1109I	GCAGC	1 cut(s)	328
LweI	GCATC	1 cut(s)	414
MaeI	CTAG	1 cut(s)	128
MaeIII	GTNAC	1 cut(s)	100
MalI	GATC	4 cut(s)	48, 75, 169, 394
MboI	GATC	4 cut(s)	46, 73, 167, 392
MboII	GAAGA	1 cut(s)	150
MflI	RGATCY	3 cut(s)	46, 73, 392
MhlI	GDGCHC	1 cut(s)	462
MluCI	AATT	4 cut(s)	255, 298, 359, 365
MmeI	TCCRAC	2 cut(s)	285, 370
MnlI	CCTC	3 cut(s)	28, 223, 232
MseI	TTAA	3 cut(s)	297, 311, 362
MslI	CAYNNNNRTG	1 cut(s)	128
MspA1I	CMGCKG	1 cut(s)	341
MspCI	CTTAAG	1 cut(s)	310
MspI	CCGG	1 cut(s)	287
MspR9I	CCNGG	1 cut(s)	287
Mva1269I	GAATGC	1 cut(s)	123
MwoI	GCNNNNNNNGC	1 cut(s)	379
NciI	CCSGG	1 cut(s)	287
NcoI	CCATGG	1 cut(s)	261
NdeII	GATC	4 cut(s)	46, 73, 167, 392
NlaIII	CATG	1 cut(s)	265
NlaIV	GGNNCC	1 cut(s)	48
PctI	GAATGC	1 cut(s)	123
PfeI	GAWTC	1 cut(s)	9
PkrI	GCNGC	1 cut(s)	343
PspN4I	GGNNCC	1 cut(s)	48
PspPI	GGNCC	1 cut(s)	232
PsuI	RGATCY	3 cut(s)	46, 73, 392
PvuII	CAGCTG	1 cut(s)	341
RsaI	GTAC	1 cut(s)	377
RsaNI	GTAC	1 cut(s)	376
RseI	CAYNNNNRTG	1 cut(s)	128
SaqAI	TTAA	3 cut(s)	297, 311, 362
SatI	GCNGC	1 cut(s)	342
Sau3AI	GATC	4 cut(s)	46, 73, 167, 392
Sau96I	GGNCC	1 cut(s)	232
ScrFI	CCNGG	1 cut(s)	287
SduI	GDGCHC	1 cut(s)	462
SetI	ASST	7 cut(s)	23, 39, 246, 331, 343, 384, 409
SfaNI	GCATC	1 cut(s)	414
SinI	GGWCC	1 cut(s)	232
SmiMI	CAYNNNNRTG	1 cut(s)	128
SmlI	CTYRAG	3 cut(s)	223, 310, 408
SmoI	CTYRAG	3 cut(s)	223, 310, 408
Sse9I	AATT	4 cut(s)	255, 298, 359, 365
SsiI	CCGC	1 cut(s)	315
SspMI	CTAG	1 cut(s)	128
StyD4I	CCNGG	1 cut(s)	285
StyI	CCWWGG	1 cut(s)	261
TasI	AATT	4 cut(s)	255, 298, 359, 365
TatI	WGTACW	1 cut(s)	375
TfiI	GAWTC	1 cut(s)	9
Tru1I	TTAA	3 cut(s)	297, 311, 362
Tru9I	TTAA	3 cut(s)	297, 311, 362
TseI	GCWGC	1 cut(s)	341
TspDTI	ATGAA	1 cut(s)	372
Vha464I	CTTAAG	1 cut(s)	310
VpaK11BI	GGWCC	1 cut(s)	232
XapI	RAATTY	1 cut(s)	365
XspI	CTAG	1 cut(s)	128

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.