RLG00000026117

Ribonuclease P MRP protein subunit

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr6
OG0007354
Physical Location & Seq
Forward (+)
638375 .. 642716
4342 bp
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UTR
Exon/CDS
Intron
RLM00000026117

Sequence Viewer

Length: 444 bp
ATGCATGAACGCTTAACTCATCCCTGCTCTCACTCTCAAGCTCAATTCCAGCTATCAGGTAAAGGATCATGGTGGGATTTAAAAATAGCCATCAAAGATAGTATTCTTGTGAACTTTGGGGAGTGTGGTCTGGCTTCTTCACTTGGATCGTTCCAAGTGAAGTATGTCAATGAGATTACAAGGCTTTGTATCATAAGAGCTTCGAGGGAGGACCATCAAAAAGTATGGTCTGCTATTACCATGGTCAGGAGTATTGCTGGTTGCCCGGTGATTTTTAATTTGTTGGACTTAAGTGGAAGTATCAGAGCTTGTAAAACAGCTGCCTTGAAGTGTGATGAATTAAAATTTGAGCAGCACAAACTTGTGGTTGGATCTATTCTTTCAGCTCAAGATACTCAAAAGATGCAGTTCTATCTTGATAAGATCAAAGGCTTGGAGCACTAA

Protein Analysis

148

Amino Acids

16.49

Weight (kDa)

8.77

Isoelectric Point (pI)

31.25

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RNase_P_Rpp14 PF01900 26 - 108 2.1e-26 Rpp14/Pop5 family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 3 cut(s) 73, 154, 379
AcsI RAATTY 1 cut(s) 344
AfiI CCNNNNNNNGG 1 cut(s) 246
AflII CTTAAG 1 cut(s) 289
AgsI TTSAA 1 cut(s) 328
AluBI AGCT 6 cut(s) 41, 52, 200, 308, 320, 386
AluI AGCT 6 cut(s) 41, 52, 200, 308, 320, 386
Alw21I GWGCWC 1 cut(s) 441
AlwI GGATC 3 cut(s) 73, 154, 379
ApeKI GCWGC 2 cut(s) 320, 352
ApoI RAATTY 1 cut(s) 344
AspS9I GGNCC 1 cut(s) 211
AsuC2I CCSGG 1 cut(s) 266
AsuHPI GGTGA 1 cut(s) 280
AvaII GGWCC 1 cut(s) 211
Bbv12I GWGCWC 1 cut(s) 441
BbvI GCAGC 2 cut(s) 307, 364
BccI CCATC 2 cut(s) 98, 222
BcnI CCSGG 1 cut(s) 266
BfrI CTTAAG 1 cut(s) 289
BisI GCNGC 2 cut(s) 321, 353
BlsI GCNGC 2 cut(s) 322, 354
Bme1390I CCNGG 1 cut(s) 266
Bme18I GGWCC 1 cut(s) 211
BmgT120I GGNCC 1 cut(s) 211
BmrFI CCNGG 1 cut(s) 266
BmsI GCATC 1 cut(s) 393
BpuEI CTTGAG 2 cut(s) 21, 372
BpuMI CCSGG 1 cut(s) 266
BsaJI CCNNGG 1 cut(s) 240
Bsc4I CCNNNNNNNGG 1 cut(s) 246
BseDI CCNNGG 1 cut(s) 240
BseGI GGATG 1 cut(s) 19
BseLI CCNNNNNNNGG 1 cut(s) 246
BseXI GCAGC 2 cut(s) 307, 364
BsiHKAI GWGCWC 1 cut(s) 441
BsiSI CCGG 1 cut(s) 266
BslI CCNNNNNNNGG 1 cut(s) 246
Bsp1286I GDGCHC 1 cut(s) 441
Bsp143I GATC 4 cut(s) 65, 146, 371, 423
Bsp19I CCATGG 1 cut(s) 240
BspPI GGATC 3 cut(s) 73, 154, 379
BspTI CTTAAG 1 cut(s) 289
BssECI CCNNGG 1 cut(s) 240
BssMI GATC 4 cut(s) 65, 146, 371, 423
BssT1I CCWWGG 1 cut(s) 240
BstAFI CTTAAG 1 cut(s) 289
BstDSI CCRYGG 1 cut(s) 240
BstF5I GGATG 1 cut(s) 19
BstKTI GATC 4 cut(s) 68, 149, 374, 426
BstMBI GATC 4 cut(s) 65, 146, 371, 423
BstSCI CCNGG 1 cut(s) 264
BstV1I GCAGC 2 cut(s) 307, 364
BstX2I RGATCY 1 cut(s) 371
BstYI RGATCY 1 cut(s) 371
BtgI CCRYGG 1 cut(s) 240
BtsCI GGATG 1 cut(s) 19
Cfr13I GGNCC 1 cut(s) 211
CviAII CATG 3 cut(s) 5, 69, 241
DpnI GATC 4 cut(s) 67, 148, 373, 425
DpnII GATC 4 cut(s) 65, 146, 371, 423
DraI TTTAAA 1 cut(s) 81
Eco130I CCWWGG 1 cut(s) 240
Eco47I GGWCC 1 cut(s) 211
EcoT14I CCWWGG 1 cut(s) 240
EcoT22I ATGCAT 1 cut(s) 6
ErhI CCWWGG 1 cut(s) 240
FaeI CATG 3 cut(s) 8, 72, 244
FaiI YATR 6 cut(s) 6, 70, 165, 194, 226, 242
FatI CATG 3 cut(s) 4, 68, 240
Fnu4HI GCNGC 2 cut(s) 321, 353
FokI GGATG 1 cut(s) 6
Fsp4HI GCNGC 2 cut(s) 321, 353
GluI GCNGC 2 cut(s) 321, 353
HapII CCGG 1 cut(s) 266
Hin1II CATG 3 cut(s) 8, 72, 244
HpaII CCGG 1 cut(s) 266
HphI GGTGA 1 cut(s) 280
Hpy166II GTNNAC 1 cut(s) 112
Hpy188I TCNGA 1 cut(s) 305
Hpy188III TCNNGA 3 cut(s) 247, 389, 416
Hpy8I GTNNAC 1 cut(s) 112
HpyCH4V TGCA 2 cut(s) 4, 406
Hsp92II CATG 3 cut(s) 8, 72, 244
Kzo9I GATC 4 cut(s) 65, 146, 371, 423
LmnI GCTCC 1 cut(s) 436
LpnPI CCDG 7 cut(s) 37, 42, 62, 116, 232, 243, 279
Lsp1109I GCAGC 2 cut(s) 307, 364
LweI GCATC 1 cut(s) 393
MalI GATC 4 cut(s) 67, 148, 373, 425
MboI GATC 4 cut(s) 65, 146, 371, 423
MboII GAAGA 1 cut(s) 129
MflI RGATCY 1 cut(s) 371
MhlI GDGCHC 1 cut(s) 441
MluCI AATT 4 cut(s) 44, 277, 338, 344
MmeI TCCRAC 2 cut(s) 264, 349
MnlI CCTC 2 cut(s) 198, 202
Mph1103I ATGCAT 1 cut(s) 6
MseI TTAA 5 cut(s) 14, 80, 276, 290, 341
MspA1I CMGCKG 1 cut(s) 320
MspCI CTTAAG 1 cut(s) 289
MspI CCGG 1 cut(s) 266
MspR9I CCNGG 1 cut(s) 266
NciI CCSGG 1 cut(s) 266
NcoI CCATGG 1 cut(s) 240
NdeII GATC 4 cut(s) 65, 146, 371, 423
NlaIII CATG 3 cut(s) 8, 72, 244
NsiI ATGCAT 1 cut(s) 6
PkrI GCNGC 2 cut(s) 322, 354
PspPI GGNCC 1 cut(s) 211
PsuI RGATCY 1 cut(s) 371
PvuII CAGCTG 1 cut(s) 320
SaqAI TTAA 5 cut(s) 14, 80, 276, 290, 341
SatI GCNGC 2 cut(s) 321, 353
Sau3AI GATC 4 cut(s) 65, 146, 371, 423
Sau96I GGNCC 1 cut(s) 211
ScrFI CCNGG 1 cut(s) 266
SduI GDGCHC 1 cut(s) 441
SetI ASST 7 cut(s) 43, 54, 61, 202, 310, 322, 388
SfaNI GCATC 1 cut(s) 393
SinI GGWCC 1 cut(s) 211
SmlI CTYRAG 3 cut(s) 36, 289, 387
SmoI CTYRAG 3 cut(s) 36, 289, 387
Sse9I AATT 4 cut(s) 44, 277, 338, 344
StyD4I CCNGG 1 cut(s) 264
StyI CCWWGG 1 cut(s) 240
TaqI TCGA 1 cut(s) 203
TasI AATT 4 cut(s) 44, 277, 338, 344
Tru1I TTAA 5 cut(s) 14, 80, 276, 290, 341
Tru9I TTAA 5 cut(s) 14, 80, 276, 290, 341
TseI GCWGC 2 cut(s) 320, 352
TspDTI ATGAA 2 cut(s) 21, 351
Vha464I CTTAAG 1 cut(s) 289
VpaK11BI GGWCC 1 cut(s) 211
XapI RAATTY 1 cut(s) 344
Zsp2I ATGCAT 1 cut(s) 6
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.