Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000001

Orthogroup ID

OG0007354

Physical Location & Seq

Genomic Coordinates Reverse (-)

53854034 .. 53854447

Gene Structure 414 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug01G0440200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 237 bp

ATGATCTCAGGACACATTCAGTATGCTAGTCGACTTGCTCACGGCAACATGCATAACACCATACGTGATCTCCGGATATTGAAGCGGTTTGGTGTCCAATGCAAGCCTCGTTGTGCTCCTAGGATAATTGAAGTCAATTGGCATCCACCACCTTATGGGTGGATTAAAATTAACTCTGATGGTGCTTGGAAGCATGGTTCTAATGTGGGGGGATATGGTGCGTTTTCCTTTTCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0006464 GO:0006807 GO:0008150 GO:0008152 GO:0009249 GO:0009987 GO:0010467 GO:0018065 GO:0018193 GO:0018205 GO:0019538 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0051604 GO:0071704 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko03008 ko03013 map03008 map03013

Pfam Domains

Protein Families

RNase_P_Rpp14

Protein Analysis

78

Amino Acids

8.82

Weight (kDa)

10.14

Isoelectric Point (pI)

37.5

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007354)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G04635
fragaria_vesca	FvH4_7g33290
malus_domestica	MD01G1231100.v1.1 MD07G1302900.v1.1 MD07G1303100.v1.1
prunus_persica	Prupe.2G321800_v2.0.a1
pyrus_communis	pycom01g23910
rosa_chinensis	RchiOBHm_Chr1g0383271 RchiOBHm_Chr3g0479561
rosa_laevigata	RLG00000026117
rosa_multiflora	Rmu_sc0007173.1_g000022 Rmu_sc0014196.1_g000006 Rmu_sc0031164.1_g000002
rosa_roxburghii	Rroxscaffold_4G00277450
rosa_rugosa	Rorug01G0440000 Rorug01G0440100 Rorug01G0440200
rosa_samantha	Rh1AG465700 Rh1BG423100 Rh1CG436300 Rh1DG455800 Rh3AG227300 Rh3CG257700
rosa_wichuraiana	Rw1G040670 Rw3G020350

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	155
AccI	GTMKAC	1 cut(s)	31
AccIII	TCCGGA	1 cut(s)	72
AciI	CCGC	1 cut(s)	85
AfiI	CCNNNNNNNGG	1 cut(s)	155
AgsI	TTSAA	2 cut(s)	82, 131
AloI	GAACNNNNNNTCC	2 cut(s)	181, 213
Alw21I	GWGCWC	1 cut(s)	118
Aor13HI	TCCGGA	1 cut(s)	72
AspA2I	CCTAGG	1 cut(s)	119
AvrII	CCTAGG	1 cut(s)	119
Bbv12I	GWGCWC	1 cut(s)	118
BccI	CCATC	1 cut(s)	173
BceAI	ACGGC	1 cut(s)	58
BfaI	CTAG	2 cut(s)	27, 120
BlnI	CCTAGG	1 cut(s)	119
BmsI	GCATC	1 cut(s)	151
BsaAI	YACGTR	1 cut(s)	65
BsaJI	CCNNGG	1 cut(s)	119
BsaWI	WCCGGW	1 cut(s)	72
BsaXI	ACNNNNNCTCC	2 cut(s)	54, 84
Bsc4I	CCNNNNNNNGG	1 cut(s)	155
BseAI	TCCGGA	1 cut(s)	72
BseDI	CCNNGG	1 cut(s)	119
BseGI	GGATG	1 cut(s)	142
BseLI	CCNNNNNNNGG	1 cut(s)	155
BseMII	CTCAG	1 cut(s)	21
BsiHKAI	GWGCWC	1 cut(s)	118
BsiSI	CCGG	1 cut(s)	73
BslI	CCNNNNNNNGG	1 cut(s)	155
Bsp1286I	GDGCHC	1 cut(s)	118
Bsp13I	TCCGGA	1 cut(s)	72
Bsp143I	GATC	2 cut(s)	3, 67
BspACI	CCGC	1 cut(s)	85
BspCNI	CTCAG	1 cut(s)	20
BspEI	TCCGGA	1 cut(s)	72
BssECI	CCNNGG	1 cut(s)	119
BssMI	GATC	2 cut(s)	3, 67
BssT1I	CCWWGG	1 cut(s)	119
BstBAI	YACGTR	1 cut(s)	65
BstC8I	GCNNGC	1 cut(s)	104
BstDEI	CTNAG	1 cut(s)	7
BstF5I	GGATG	1 cut(s)	142
BstKTI	GATC	2 cut(s)	6, 70
BstMBI	GATC	2 cut(s)	3, 67
BstNSI	RCATGY	1 cut(s)	52
BtsCI	GGATG	1 cut(s)	142
Cac8I	GCNNGC	1 cut(s)	104
CviAII	CATG	2 cut(s)	49, 194
CviJI	RGCY	1 cut(s)	106
CviKI_1	RGCY	1 cut(s)	106
DdeI	CTNAG	1 cut(s)	7
DpnI	GATC	2 cut(s)	5, 69
DpnII	GATC	2 cut(s)	3, 67
Eco130I	CCWWGG	1 cut(s)	119
EcoT14I	CCWWGG	1 cut(s)	119
EcoT22I	ATGCAT	1 cut(s)	54
ErhI	CCWWGG	1 cut(s)	119
FaeI	CATG	2 cut(s)	52, 197
FaiI	YATR	7 cut(s)	24, 50, 54, 62, 156, 195, 216
FatI	CATG	2 cut(s)	48, 193
FblI	GTMKAC	1 cut(s)	31
FokI	GGATG	1 cut(s)	129
FspBI	CTAG	2 cut(s)	27, 120
HapII	CCGG	1 cut(s)	73
Hin1II	CATG	2 cut(s)	52, 197
HincII	GTYRAC	1 cut(s)	32
HindII	GTYRAC	1 cut(s)	32
HpaII	CCGG	1 cut(s)	73
Hpy166II	GTNNAC	1 cut(s)	32
Hpy188I	TCNGA	1 cut(s)	178
Hpy188III	TCNNGA	2 cut(s)	9, 73
Hpy8I	GTNNAC	1 cut(s)	32
HpyCH4IV	ACGT	1 cut(s)	64
HpyCH4V	TGCA	2 cut(s)	52, 102
HpyF3I	CTNAG	1 cut(s)	7
HpySE526I	ACGT	1 cut(s)	64
Hsp92II	CATG	2 cut(s)	52, 197
Kpn2I	TCCGGA	1 cut(s)	72
Kzo9I	GATC	2 cut(s)	3, 67
LmnI	GCTCC	1 cut(s)	121
LpnPI	CCDG	1 cut(s)	86
LweI	GCATC	1 cut(s)	151
MaeI	CTAG	2 cut(s)	27, 120
MaeII	ACGT	1 cut(s)	64
MalI	GATC	2 cut(s)	5, 69
MboI	GATC	2 cut(s)	3, 67
MfeI	CAATTG	1 cut(s)	136
MhlI	GDGCHC	1 cut(s)	118
MluCI	AATT	3 cut(s)	126, 136, 168
MnlI	CCTC	1 cut(s)	117
Mph1103I	ATGCAT	1 cut(s)	54
MroI	TCCGGA	1 cut(s)	72
MseI	TTAA	3 cut(s)	165, 171, 235
MspI	CCGG	1 cut(s)	73
MunI	CAATTG	1 cut(s)	136
NdeII	GATC	2 cut(s)	3, 67
NlaIII	CATG	2 cut(s)	52, 197
NsiI	ATGCAT	1 cut(s)	54
NspI	RCATGY	1 cut(s)	52
PflMI	CCANNNNNTGG	1 cut(s)	155
Ppu21I	YACGTR	1 cut(s)	65
SalI	GTCGAC	1 cut(s)	30
SaqAI	TTAA	3 cut(s)	165, 171, 235
Sau3AI	GATC	2 cut(s)	3, 67
SduI	GDGCHC	1 cut(s)	118
SetI	ASST	2 cut(s)	67, 154
SfaNI	GCATC	1 cut(s)	151
Sse9I	AATT	3 cut(s)	126, 136, 168
SsiI	CCGC	1 cut(s)	85
SspMI	CTAG	2 cut(s)	27, 120
StyI	CCWWGG	1 cut(s)	119
TaiI	ACGT	1 cut(s)	67
TaqI	TCGA	1 cut(s)	31
TasI	AATT	3 cut(s)	126, 136, 168
Tru1I	TTAA	3 cut(s)	165, 171, 235
Tru9I	TTAA	3 cut(s)	165, 171, 235
Van91I	CCANNNNNTGG	1 cut(s)	155
XceI	RCATGY	1 cut(s)	52
XcmI	CCANNNNNNNNNTGG	1 cut(s)	156
XmaJI	CCTAGG	1 cut(s)	119
XmiI	GTMKAC	1 cut(s)	31
XspI	CTAG	2 cut(s)	27, 120
Zsp2I	ATGCAT	1 cut(s)	54

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.