AT1G04945

Box C D snoRNA protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0006202
Physical Location & Seq
Forward (+)
1399174 .. 1403112
3939 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G04945.1

Sequence Viewer

Length: 1104 bp
ATGAAAGATTCGGTCTGCGAAGAGTGCAAACAAAATCCATGGAAGTACAAATGTCCCGGATGTTCAATTCGATCGTGTGCCCTTCCCTGTGTGAAAGCCCACAAGCAGCGAACAGGTTGTACCGGAAAAAGGAAGTTCACCGACGTCGTTCCCCTCTCCAAGTTCGACGACAATCTCCTCCTCTCTGACTACAATATGCTTGAGGAAACAAAAAGAGTAGCCGAGTCTGCTCTGAGAAGGAGAAGTCAATTATGCAAAAATCATTATTCTTATAAGTTACCCTATCTTCTTAAGAGCCTTCAAAGTGCTGCTTATAGCCGCAGAACTAAGCTATGGTATCTCCCTAGTGGAATGTTAAAGAGGGAAAATAATCAGTCCAGATACGATAATAGGAGCAAGTGTATCTCGTGGACAATAGAGTGGCGGTTTCACTCTACAGATGTCATTCTTGTTGACCATGGAGTTGGTGAAGATAGAAACCTATGCTCAGTGATAAAGAATCATCTCAAGCCTGGCCCCTGGATTCACAAGCTCAAGCCTTTTTGTGATGTGGATCTTGATTCTCTCAAACTTTTTATACGCCAATACCCAAAGGGTGCAAAGGCTCCTTTCAAGGAGCTGGACATCAAAGCTCCTTTGAGGAAACAGCTTGCCAAAGTTGTTATATTAGAGTACCCGGTGATCCATGTATATCTACCTTCACAGAGCTATGAATTTAAAGTTATCAAAGACTTTAACACGACACCTAATCCTAATGATTCGTTATACGATGGTCATGGATGCACAAATGGTATAACCTTCCGAGAAGAAGAAATAGAAGAAGACGACATTGACTCCTTTGAGCCAGAGGTTCTTGGTCTTATGAAACAAATGAACTATAACCCGTGTCTGCGAGTCTCAGAGAAAAGCAAGGCAGAGGGCGTTGGTACCAACAACTCAAATCCTCAGGTTGATACCACAGAACAAGAAGATGCCGGTAACATGGAGCTTGAATTTGAGCAAGGGTTAATAGACACATACTCAGATCTTTTTGCGGAGATGAACCCAGATACTGATTTCATCGCTGATGGACTAGATTTAGAAGAAGGGGAAATCGTCGAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
TIC20 zf-HIT

Protein Analysis

367

Amino Acids

42.21

Weight (kDa)

5.75

Isoelectric Point (pI)

52.36

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-HIT PF04438 4 - 32 4.2e-07 HIT zinc finger
BCD1 PF25790 98 - 241 3.9e-50 BCD1 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 273
AatII GACGTC 1 cut(s) 147
Acc65I GGTACC 1 cut(s) 926
AccB1I GGYRCC 1 cut(s) 926
AciI CCGC 3 cut(s) 319, 424, 1034
AclWI GGATC 2 cut(s) 561, 676
AcsI RAATTY 2 cut(s) 713, 992
AcyI GRCGYC 1 cut(s) 144
AfaI GTAC 4 cut(s) 47, 121, 674, 928
AfiI CCNNNNNNNGG 1 cut(s) 129
AflII CTTAAG 1 cut(s) 290
AgsI TTSAA 4 cut(s) 66, 302, 613, 992
AjnI CCWGG 2 cut(s) 511, 518
AluBI AGCT 7 cut(s) 331, 532, 619, 632, 649, 708, 988
AluI AGCT 7 cut(s) 331, 532, 619, 632, 649, 708, 988
Alw26I GTCTC 1 cut(s) 901
AlwI GGATC 2 cut(s) 561, 676
AlwNI CAGNNNCTG 1 cut(s) 1052
AoxI GGCC 1 cut(s) 514
ApeKI GCWGC 2 cut(s) 106, 308
ApoI RAATTY 2 cut(s) 713, 992
Asp718I GGTACC 1 cut(s) 926
AspS9I GGNCC 1 cut(s) 515
AsuC2I CCSGG 2 cut(s) 57, 677
AsuHPI GGTGA 3 cut(s) 130, 479, 691
AxyI CCTNAGG 1 cut(s) 945
BaeGI GKGCMC 1 cut(s) 82
BanI GGYRCC 1 cut(s) 926
BauI CACGAG 1 cut(s) 406
BbsI GAAGAC 1 cut(s) 828
BbvI GCAGC 2 cut(s) 118, 295
BccI CCATC 2 cut(s) 764, 1061
BciT130I CCWGG 2 cut(s) 513, 520
BcnI CCSGG 2 cut(s) 57, 677
BcoDI GTCTC 1 cut(s) 901
BfaI CTAG 2 cut(s) 345, 1073
BfmI CTRYAG 1 cut(s) 435
BfrI CTTAAG 1 cut(s) 290
BglII AGATCT 1 cut(s) 1024
BisI GCNGC 3 cut(s) 107, 309, 319
BlsI GCNGC 3 cut(s) 108, 310, 320
Bme1390I CCNGG 4 cut(s) 57, 513, 520, 677
BmgT120I GGNCC 1 cut(s) 515
BmiI GGNNCC 3 cut(s) 517, 606, 928
BmrFI CCNGG 4 cut(s) 57, 513, 520, 677
BmsI GCATC 2 cut(s) 770, 961
BpiI GAAGAC 1 cut(s) 828
BpuEI CTTGAG 3 cut(s) 221, 491, 518
BpuMI CCSGG 2 cut(s) 57, 677
BsaBI GATNNNNATC 1 cut(s) 552
BsaHI GRCGYC 1 cut(s) 144
BsaJI CCNNGG 3 cut(s) 38, 457, 518
BsaWI WCCGGW 1 cut(s) 122
BsaXI ACNNNNNCTCC 4 cut(s) 385, 415, 818, 848
Bsc4I CCNNNNNNNGG 1 cut(s) 129
Bse118I RCCGGY 1 cut(s) 974
Bse21I CCTNAGG 1 cut(s) 945
Bse8I GATNNNNATC 1 cut(s) 552
BseBI CCWGG 2 cut(s) 513, 520
BseDI CCNNGG 3 cut(s) 38, 457, 518
BseGI GGATG 2 cut(s) 65, 785
BseJI GATNNNNATC 1 cut(s) 552
BseLI CCNNNNNNNGG 1 cut(s) 129
BseMII CTCAG 5 cut(s) 224, 501, 912, 959, 1035
BseRI GAGGAG 2 cut(s) 167, 170
BseSI GKGCMC 1 cut(s) 82
BseXI GCAGC 2 cut(s) 118, 295
Bsh1285I CGRYCG 1 cut(s) 74
BshFI GGCC 1 cut(s) 516
BshNI GGYRCC 1 cut(s) 926
BsiEI CGRYCG 1 cut(s) 74
BsiSI CCGG 4 cut(s) 57, 123, 677, 975
BslFI GGGAC 1 cut(s) 39
BslI CCNNNNNNNGG 1 cut(s) 129
BsmAI GTCTC 1 cut(s) 901
BsmFI GGGAC 1 cut(s) 39
BsnI GGCC 1 cut(s) 516
Bsp1286I GDGCHC 1 cut(s) 82
Bsp143I GATC 4 cut(s) 71, 553, 681, 1024
Bsp19I CCATGG 2 cut(s) 38, 457
BspACI CCGC 3 cut(s) 319, 424, 1034
BspANI GGCC 1 cut(s) 516
BspCNI CTCAG 5 cut(s) 225, 500, 911, 958, 1034
BspLI GGNNCC 3 cut(s) 517, 606, 928
BspPI GGATC 2 cut(s) 561, 676
BspT107I GGYRCC 1 cut(s) 926
BspTI CTTAAG 1 cut(s) 290
BsrFI RCCGGY 1 cut(s) 974
BssAI RCCGGY 1 cut(s) 974
BssECI CCNNGG 3 cut(s) 38, 457, 518
BssMI GATC 4 cut(s) 71, 553, 681, 1024
BssNI GRCGYC 1 cut(s) 144
BssSI CACGAG 1 cut(s) 406
BssT1I CCWWGG 2 cut(s) 38, 457
Bst2BI CACGAG 1 cut(s) 406
Bst2UI CCWGG 2 cut(s) 513, 520
Bst6I CTCTTC 1 cut(s) 15
BstACI GRCGYC 1 cut(s) 144
BstAFI CTTAAG 1 cut(s) 290
BstC8I GCNNGC 1 cut(s) 651
BstDEI CTNAG 6 cut(s) 233, 327, 487, 898, 945, 1021
BstDSI CCRYGG 2 cut(s) 38, 457
BstF5I GGATG 2 cut(s) 65, 785
BstKTI GATC 4 cut(s) 74, 556, 684, 1027
BstMAI GTCTC 1 cut(s) 901
BstMBI GATC 4 cut(s) 71, 553, 681, 1024
BstMCI CGRYCG 1 cut(s) 74
BstMWI GCNNNNNNNGC 2 cut(s) 24, 227
BstNI CCWGG 2 cut(s) 513, 520
BstSCI CCNGG 4 cut(s) 55, 511, 518, 675
BstSFI CTRYAG 1 cut(s) 435
BstSLI GKGCMC 1 cut(s) 82
BstV1I GCAGC 2 cut(s) 118, 295
BstV2I GAAGAC 1 cut(s) 828
BstX2I RGATCY 2 cut(s) 553, 1024
BstXI CCANNNNNNTGG 1 cut(s) 464
BstYI RGATCY 2 cut(s) 553, 1024
Bsu36I CCTNAGG 1 cut(s) 945
BsuRI GGCC 1 cut(s) 516
BtgI CCRYGG 2 cut(s) 38, 457
BtgZI GCGATG 1 cut(s) 1045
BtsCI GGATG 2 cut(s) 65, 785
BtsIMutI CAGTG 1 cut(s) 495
Cac8I GCNNGC 1 cut(s) 651
CaiI CAGNNNCTG 1 cut(s) 1052
Cfr10I RCCGGY 1 cut(s) 974
Cfr13I GGNCC 1 cut(s) 515
Csp6I GTAC 4 cut(s) 46, 120, 673, 927
CviAII CATG 5 cut(s) 39, 458, 686, 776, 982
CviQI GTAC 4 cut(s) 46, 120, 673, 927
DdeI CTNAG 6 cut(s) 233, 327, 487, 898, 945, 1021
DpnI GATC 4 cut(s) 73, 555, 683, 1026
DpnII GATC 4 cut(s) 71, 553, 681, 1024
DraI TTTAAA 1 cut(s) 718
Eam1104I CTCTTC 1 cut(s) 15
EarI CTCTTC 1 cut(s) 15
Eco130I CCWWGG 2 cut(s) 38, 457
Eco81I CCTNAGG 1 cut(s) 945
EcoRII CCWGG 2 cut(s) 511, 518
EcoT14I CCWWGG 2 cut(s) 38, 457
ErhI CCWWGG 2 cut(s) 38, 457
FaeI CATG 5 cut(s) 42, 461, 689, 779, 985
FalI AAGNNNNNCTT 2 cut(s) 295, 327
FaqI GGGAC 1 cut(s) 39
FatI CATG 5 cut(s) 38, 457, 685, 775, 981
Fnu4HI GCNGC 3 cut(s) 107, 309, 319
FokI GGATG 2 cut(s) 72, 792
Fsp4HI GCNGC 3 cut(s) 107, 309, 319
FspBI CTAG 2 cut(s) 345, 1073
GluI GCNGC 3 cut(s) 107, 309, 319
HaeIII GGCC 1 cut(s) 516
HapII CCGG 4 cut(s) 57, 123, 677, 975
Hin1I GRCGYC 1 cut(s) 144
Hin1II CATG 5 cut(s) 42, 461, 689, 779, 985
HincII GTYRAC 1 cut(s) 454
HindII GTYRAC 1 cut(s) 454
HinfI GANTC 8 cut(s) 8, 224, 499, 523, 560, 758, 833, 894
HpaII CCGG 4 cut(s) 57, 123, 677, 975
HphI GGTGA 3 cut(s) 130, 479, 691
Hpy166II GTNNAC 3 cut(s) 138, 411, 454
Hpy188I TCNGA 5 cut(s) 187, 234, 803, 901, 1024
Hpy188III TCNNGA 2 cut(s) 378, 557
Hpy8I GTNNAC 3 cut(s) 138, 411, 454
Hpy99I CGWCG 4 cut(s) 146, 149, 170, 1100
HpyAV CCTTC 6 cut(s) 92, 231, 308, 708, 808, 1079
HpyCH4IV ACGT 1 cut(s) 144
HpyCH4V TGCA 4 cut(s) 27, 255, 599, 783
HpyF10VI GCNNNNNNNGC 2 cut(s) 24, 227
HpyF3I CTNAG 6 cut(s) 233, 327, 487, 898, 945, 1021
HpySE526I ACGT 1 cut(s) 144
Hsp92I GRCGYC 1 cut(s) 144
Hsp92II CATG 5 cut(s) 42, 461, 689, 779, 985
KpnI GGTACC 1 cut(s) 930
Kzo9I GATC 4 cut(s) 71, 553, 681, 1024
LmnI GCTCC 5 cut(s) 393, 610, 616, 637, 985
Lsp1109I GCAGC 2 cut(s) 118, 295
LweI GCATC 2 cut(s) 770, 961
MaeI CTAG 2 cut(s) 345, 1073
MaeII ACGT 1 cut(s) 144
MaeIII GTNAC 2 cut(s) 276, 977
MalI GATC 4 cut(s) 73, 555, 683, 1026
MboI GATC 4 cut(s) 71, 553, 681, 1024
MboII GAAGA 9 cut(s) 32, 278, 482, 818, 821, 830, 833, 980, 1094
MflI RGATCY 2 cut(s) 553, 1024
MhlI GDGCHC 1 cut(s) 82
MluCI AATT 4 cut(s) 66, 248, 713, 992
MlyI GAGTC 3 cut(s) 233, 827, 903
MnlI CCTC 9 cut(s) 164, 188, 191, 196, 354, 633, 841, 910, 954
MseI TTAA 5 cut(s) 291, 356, 717, 735, 1007
MspCI CTTAAG 1 cut(s) 290
MspI CCGG 4 cut(s) 57, 123, 677, 975
MspR9I CCNGG 4 cut(s) 57, 513, 520, 677
MvaI CCWGG 2 cut(s) 513, 520
MwoI GCNNNNNNNGC 2 cut(s) 24, 227
NciI CCSGG 2 cut(s) 57, 677
NcoI CCATGG 2 cut(s) 38, 457
NdeII GATC 4 cut(s) 71, 553, 681, 1024
NlaIII CATG 5 cut(s) 42, 461, 689, 779, 985
NlaIV GGNNCC 3 cut(s) 517, 606, 928
NmeAIII GCCGAG 1 cut(s) 247
PfeI GAWTC 5 cut(s) 8, 499, 523, 560, 758
PfoI TCCNGGA 1 cut(s) 55
PkrI GCNGC 3 cut(s) 108, 310, 320
Ple19I CGATCG 1 cut(s) 74
PleI GAGTC 3 cut(s) 232, 827, 902
PpsI GAGTC 3 cut(s) 232, 827, 902
PsiI TTATAA 1 cut(s) 273
Psp6I CCWGG 2 cut(s) 511, 518
PspGI CCWGG 2 cut(s) 511, 518
PspN4I GGNNCC 3 cut(s) 517, 606, 928
PspPI GGNCC 1 cut(s) 515
PsrI GAACNNNNNNTAC 2 cut(s) 103, 135
PstNI CAGNNNCTG 1 cut(s) 1052
PsuI RGATCY 2 cut(s) 553, 1024
PvuI CGATCG 1 cut(s) 74
RsaI GTAC 4 cut(s) 47, 121, 674, 928
RsaNI GTAC 4 cut(s) 46, 120, 673, 927
SaqAI TTAA 5 cut(s) 291, 356, 717, 735, 1007
SatI GCNGC 3 cut(s) 107, 309, 319
Sau3AI GATC 4 cut(s) 71, 553, 681, 1024
Sau96I GGNCC 1 cut(s) 515
SchI GAGTC 3 cut(s) 233, 827, 903
ScrFI CCNGG 4 cut(s) 57, 513, 520, 677
SduI GDGCHC 1 cut(s) 82
SfaNI GCATC 2 cut(s) 770, 961
SfcI CTRYAG 1 cut(s) 435
SmlI CTYRAG 4 cut(s) 200, 290, 506, 533
SmoI CTYRAG 4 cut(s) 200, 290, 506, 533
Sse9I AATT 4 cut(s) 66, 248, 713, 992
SsiI CCGC 3 cut(s) 319, 424, 1034
SspMI CTAG 2 cut(s) 345, 1073
StyD4I CCNGG 4 cut(s) 55, 511, 518, 675
StyI CCWWGG 2 cut(s) 38, 457
TaiI ACGT 1 cut(s) 147
TaqI TCGA 3 cut(s) 70, 165, 1098
TasI AATT 4 cut(s) 66, 248, 713, 992
TatI WGTACW 1 cut(s) 45
TauI GCSGC 1 cut(s) 321
TfiI GAWTC 5 cut(s) 8, 499, 523, 560, 758
Tru1I TTAA 5 cut(s) 291, 356, 717, 735, 1007
Tru9I TTAA 5 cut(s) 291, 356, 717, 735, 1007
TscAI CASTG 1 cut(s) 495
TseI GCWGC 2 cut(s) 106, 308
TspDTI ATGAA 6 cut(s) 17, 726, 878, 887, 1048, 1055
TspRI CASTG 1 cut(s) 495
Vha464I CTTAAG 1 cut(s) 290
XapI RAATTY 2 cut(s) 713, 992
XspI CTAG 2 cut(s) 345, 1073
ZraI GACGTC 1 cut(s) 145
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.