Rmu_sc0002541.1_g000034

Box C D snoRNA protein

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0002541.1
Physical Location & Seq
Reverse (-)
132355 .. 136652
4298 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0002541.1_g000034.1.cds

Sequence Viewer

Length: 1587 bp
atgttagctgaggatcttgaattcttgattcttgatctgttgatcatggtcggtcactcggtattgattataatgacggatcaccggaaactcaagaggtacaaaaatcttttgtcatggtttacaagtggtactccatcaagtgatagtgtcgatgagattagaagtgggagtagaaatgtgactgagaattctgttaatgatgtccctttaaaccattctccatctattccactagaagagtgtcataatgaaagaattgagagagaagaaagttttgatgttagttctcttgaacgtgatccaggaatacggcgtccaatatccaagtaccctttgaatgagcgtgacaatattcgaaggctgctctctctctctgctcgtgatcacaaaatggaggaggacggaggagaggcaaagacaaaggcaaaggcaaaggcaatgttatgcgaagagtgcaaagccaaagaatccaagtacaaatgtcccggttgctccatacgctcctgcagccttccctgcgttaaagcccacaagattcgtacctcttctccttccttgtctaaatcattgtatgttgtagactacaatctgcttgaggaagtgaagagggttgctgattctgctcagagattgaggaataagttgtgcagatacaatagttttaggctgccctttcatcttaagagcctacgcggtgctgctttcagtcgcagaaccaaactcttgtttttgcctactggtatgtcaaagagggacaaaaatcagacccgatatgacacaaggaagaaatgcatcacatggaccattgagtggcggtttcattctacagatgttgttctaattgaccatggagtaaatgaaaacatgaacctctcctctgttcttgaagaccatctacagcctggcccatggaatcataagctgaggcaattctgtatagagcagctggattgtctcaagctttttattcgtaaacgcccaaagggcaccaggtcaccttttcgtgagttagatttaagagttccaatcaggcagcaattagccaacctggatattttggaataccctgtcatctatgtttttcttccttcacacagtattgattttgaagtcgttaaagatgtcactcgtaatggtcacaaacaagagcttcagaattatggaagtaatgacccaggtgcaggaggtgtaccctttagggaggaggaaatagaagaggacaacagctgccctaaggtgttagatctaaagggacatgagacttcagtttccctgcctcatatttccaacaacagcaggtgtgagaaagggataaataatgcatcagatagatctttgtctgcaacactagcagcagaaaatggttcacattccagctccaaggataaggaacaaggcctttttgaagacatggagtttgattttgatcaaggcttaatagactcgtattcagatcttattgctgaaattaatcctgatgattttcttgatttggatggtgaagggatagaaagaaatctttcaggtatcagggatttcttattatcagatgatgatatagaggaaggggaaatattagaatga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

528

Amino Acids

60.3

Weight (kDa)

5.82

Isoelectric Point (pI)

57.57

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 71
AarI CACCTGC 1 cut(s) 1290
Acc36I ACCTGC 1 cut(s) 1290
AccB1I GGYRCC 1 cut(s) 989
AccB7I CCANNNNNTGG 1 cut(s) 813
AccI GTMKAC 1 cut(s) 582
AccII CGCG 1 cut(s) 696
AciI CCGC 2 cut(s) 696, 817
AclWI GGATC 3 cut(s) 21, 87, 296
AcsI RAATTY 2 cut(s) 20, 190
AcuI CTGAAG 2 cut(s) 1139, 1251
AcyI GRCGYC 1 cut(s) 316
AfaI GTAC 6 cut(s) 101, 133, 332, 479, 544, 1194
AfiI CCNNNNNNNGG 2 cut(s) 813, 1184
AflII CTTAAG 1 cut(s) 683
AgsI TTSAA 6 cut(s) 20, 296, 340, 890, 1112, 1409
AjnI CCWGG 5 cut(s) 304, 904, 992, 1050, 1177
AluBI AGCT 7 cut(s) 8, 925, 949, 964, 1153, 1230, 1380
AluI AGCT 7 cut(s) 8, 925, 949, 964, 1153, 1230, 1380
Alw26I GTCTC 2 cut(s) 962, 1256
AlwI GGATC 3 cut(s) 21, 87, 296
AoxI GGCC 2 cut(s) 907, 1399
ApeKI GCWGC 8 cut(s) 364, 510, 670, 701, 946, 1036, 1230, 1355
ApoI RAATTY 2 cut(s) 20, 190
ArsI GACNNNNNNTTYG 2 cut(s) 1403, 1435
AseI ATTAAT 1 cut(s) 1473
Asp700I GAANNNNTTC 1 cut(s) 1522
AspS9I GGNCC 2 cut(s) 804, 908
AsuC2I CCSGG 1 cut(s) 489
AsuHPI GGTGA 3 cut(s) 74, 990, 1514
AsuII TTCGAA 1 cut(s) 358
AvaII GGWCC 1 cut(s) 804
AxyI CCTNAGG 1 cut(s) 1236
BaeGI GKGCMC 1 cut(s) 992
BaeI ACNNNNGTAYC 2 cut(s) 646, 679
BanI GGYRCC 1 cut(s) 989
BarI GAAGNNNNNNTAC 2 cut(s) 882, 914
BauI CACGAG 1 cut(s) 381
BbsI GAAGAC 2 cut(s) 897, 1416
BbvCI CCTCAGC 2 cut(s) 9, 926
BbvI GCAGC 8 cut(s) 351, 522, 657, 688, 958, 1048, 1217, 1367
BccI CCATC 4 cut(s) 145, 232, 903, 1493
BceAI ACGGC 1 cut(s) 329
BciT130I CCWGG 5 cut(s) 306, 906, 994, 1052, 1179
BclI TGATCA 3 cut(s) 42, 385, 1429
BcnI CCSGG 1 cut(s) 489
BcoDI GTCTC 2 cut(s) 962, 1256
BfaI CTAG 2 cut(s) 236, 1352
BfmI CTRYAG 3 cut(s) 508, 828, 899
BfrI CTTAAG 1 cut(s) 683
BfuAI ACCTGC 1 cut(s) 1290
BglI GCCNNNNNGGC 1 cut(s) 987
BglII AGATCT 3 cut(s) 1246, 1334, 1456
BisI GCNGC 8 cut(s) 365, 511, 671, 702, 947, 1037, 1231, 1356
BlsI GCNGC 8 cut(s) 366, 512, 672, 703, 948, 1038, 1232, 1357
Bme1390I CCNGG 6 cut(s) 306, 489, 906, 994, 1052, 1179
Bme18I GGWCC 1 cut(s) 804
BmgT120I GGNCC 2 cut(s) 804, 908
BmiI GGNNCC 1 cut(s) 991
BmrFI CCNGG 6 cut(s) 306, 489, 906, 994, 1052, 1179
BmsI GCATC 2 cut(s) 804, 1334
BpiI GAAGAC 2 cut(s) 897, 1416
Bpu10I CCTNAGC 2 cut(s) 9, 926
Bpu14I TTCGAA 1 cut(s) 358
BpuEI CTTGAG 3 cut(s) 77, 617, 944
BpuMI CCSGG 1 cut(s) 489
BsaBI GATNNNNATC 1 cut(s) 1428
BsaHI GRCGYC 1 cut(s) 316
BsaJI CCNNGG 4 cut(s) 850, 911, 1177, 1383
BsaWI WCCGGW 1 cut(s) 84
BsaXI ACNNNNNCTCC 2 cut(s) 535, 565
Bsc4I CCNNNNNNNGG 2 cut(s) 813, 1184
Bse1I ACTGG 1 cut(s) 745
Bse21I CCTNAGG 1 cut(s) 1236
Bse3DI GCAATG 1 cut(s) 447
Bse8I GATNNNNATC 1 cut(s) 1428
BseBI CCWGG 5 cut(s) 306, 906, 994, 1052, 1179
BseDI CCNNGG 4 cut(s) 850, 911, 1177, 1383
BseGI GGATG 1 cut(s) 1504
BseJI GATNNNNATC 1 cut(s) 1428
BseLI CCNNNNNNNGG 2 cut(s) 813, 1184
BseMI GCAATG 1 cut(s) 447
BseMII CTCAG 3 cut(s) 177, 641, 917
BseNI ACTGG 1 cut(s) 745
BseRI GAGGAG 4 cut(s) 413, 423, 868, 1220
BseSI GKGCMC 1 cut(s) 992
BseXI GCAGC 8 cut(s) 351, 522, 657, 688, 958, 1048, 1217, 1367
BsgI GTGCAG 2 cut(s) 670, 1203
Bsh1236I CGCG 1 cut(s) 696
BshFI GGCC 2 cut(s) 909, 1401
BshNI GGYRCC 1 cut(s) 989
BsiSI CCGG 2 cut(s) 85, 489
BslFI GGGAC 4 cut(s) 191, 471, 770, 1269
BslI CCNNNNNNNGG 2 cut(s) 813, 1184
BsmAI GTCTC 2 cut(s) 962, 1256
BsmFI GGGAC 4 cut(s) 191, 471, 770, 1269
BsnI GGCC 2 cut(s) 909, 1401
Bsp119I TTCGAA 1 cut(s) 358
Bsp1286I GDGCHC 1 cut(s) 992
Bsp19I CCATGG 2 cut(s) 850, 911
BspACI CCGC 2 cut(s) 696, 817
BspANI GGCC 2 cut(s) 909, 1401
BspCNI CTCAG 3 cut(s) 178, 640, 918
BspFNI CGCG 1 cut(s) 696
BspLI GGNNCC 1 cut(s) 991
BspMAI CTGCAG 1 cut(s) 512
BspMI ACCTGC 1 cut(s) 1290
BspPI GGATC 3 cut(s) 21, 87, 296
BspT104I TTCGAA 1 cut(s) 358
BspT107I GGYRCC 1 cut(s) 989
BspTI CTTAAG 1 cut(s) 683
BsrDI GCAATG 1 cut(s) 447
BsrI ACTGG 1 cut(s) 745
BssECI CCNNGG 4 cut(s) 850, 911, 1177, 1383
BssNI GRCGYC 1 cut(s) 316
BssSI CACGAG 1 cut(s) 381
BssT1I CCWWGG 3 cut(s) 850, 911, 1383
Bst2BI CACGAG 1 cut(s) 381
Bst2UI CCWGG 5 cut(s) 306, 906, 994, 1052, 1179
Bst4CI ACNGT 1 cut(s) 1100
Bst6I CTCTTC 5 cut(s) 234, 447, 553, 602, 1212
BstACI GRCGYC 1 cut(s) 316
BstAFI CTTAAG 1 cut(s) 683
BstBI TTCGAA 1 cut(s) 358
BstDEI CTNAG 5 cut(s) 9, 186, 627, 926, 1236
BstDSI CCRYGG 2 cut(s) 850, 911
BstEII GGTNACC 1 cut(s) 996
BstF5I GGATG 1 cut(s) 1504
BstFNI CGCG 1 cut(s) 696
BstMAI GTCTC 2 cut(s) 962, 1256
BstMWI GCNNNNNNNGC 7 cut(s) 456, 501, 510, 519, 623, 987, 1352
BstNI CCWGG 5 cut(s) 306, 906, 994, 1052, 1179
BstPI GGTNACC 1 cut(s) 996
BstSCI CCNGG 6 cut(s) 304, 487, 904, 992, 1050, 1177
BstSFI CTRYAG 3 cut(s) 508, 828, 899
BstSLI GKGCMC 1 cut(s) 992
BstUI CGCG 1 cut(s) 696
BstV1I GCAGC 8 cut(s) 351, 522, 657, 688, 958, 1048, 1217, 1367
BstV2I GAAGAC 2 cut(s) 897, 1416
BstX2I RGATCY 4 cut(s) 13, 1246, 1334, 1456
BstYI RGATCY 4 cut(s) 13, 1246, 1334, 1456
Bsu36I CCTNAGG 1 cut(s) 1236
BsuRI GGCC 2 cut(s) 909, 1401
BtgI CCRYGG 2 cut(s) 850, 911
BtsCI GGATG 1 cut(s) 1504
BveI ACCTGC 1 cut(s) 1290
Cfr13I GGNCC 2 cut(s) 804, 908
CseI GACGC 1 cut(s) 305
CsiI ACCWGGT 1 cut(s) 992
Csp6I GTAC 6 cut(s) 100, 132, 331, 478, 543, 1193
CviAII CATG 8 cut(s) 46, 117, 801, 851, 868, 912, 1259, 1414
CviQI GTAC 6 cut(s) 100, 132, 331, 478, 543, 1193
DdeI CTNAG 5 cut(s) 9, 186, 627, 926, 1236
DraI TTTAAA 1 cut(s) 213
Eam1104I CTCTTC 5 cut(s) 234, 447, 553, 602, 1212
EarI CTCTTC 5 cut(s) 234, 447, 553, 602, 1212
Eco130I CCWWGG 3 cut(s) 850, 911, 1383
Eco147I AGGCCT 1 cut(s) 1401
Eco47I GGWCC 1 cut(s) 804
Eco57I CTGAAG 2 cut(s) 1139, 1251
Eco81I CCTNAGG 1 cut(s) 1236
Eco91I GGTNACC 1 cut(s) 996
EcoO65I GGTNACC 1 cut(s) 996
EcoRI GAATTC 2 cut(s) 20, 190
EcoRII CCWGG 5 cut(s) 304, 904, 992, 1050, 1177
EcoT14I CCWWGG 3 cut(s) 850, 911, 1383
EcoT22I ATGCAT 2 cut(s) 797, 1327
ErhI CCWWGG 3 cut(s) 850, 911, 1383
FaeI CATG 8 cut(s) 49, 120, 804, 854, 871, 915, 1262, 1417
FaqI GGGAC 4 cut(s) 191, 471, 770, 1269
FatI CATG 8 cut(s) 45, 116, 800, 850, 867, 911, 1258, 1413
FbaI TGATCA 3 cut(s) 42, 385, 1429
FblI GTMKAC 1 cut(s) 582
Fnu4HI GCNGC 8 cut(s) 365, 511, 671, 702, 947, 1037, 1231, 1356
FokI GGATG 1 cut(s) 1511
Fsp4HI GCNGC 8 cut(s) 365, 511, 671, 702, 947, 1037, 1231, 1356
FspBI CTAG 2 cut(s) 236, 1352
GluI GCNGC 8 cut(s) 365, 511, 671, 702, 947, 1037, 1231, 1356
HaeIII GGCC 2 cut(s) 909, 1401
HapII CCGG 2 cut(s) 85, 489
HgaI GACGC 1 cut(s) 305
Hin1I GRCGYC 1 cut(s) 316
Hin1II CATG 8 cut(s) 49, 120, 804, 854, 871, 915, 1262, 1417
HindIII AAGCTT 1 cut(s) 962
HinfI GANTC 6 cut(s) 28, 470, 538, 620, 916, 1445
HpaII CCGG 2 cut(s) 85, 489
HphI GGTGA 3 cut(s) 74, 990, 1514
Hpy166II GTNNAC 5 cut(s) 123, 583, 977, 1193, 1370
Hpy188I TCNGA 6 cut(s) 630, 768, 1158, 1330, 1456, 1552
Hpy8I GTNNAC 5 cut(s) 123, 583, 977, 1193, 1370
HpyAV CCTTC 6 cut(s) 354, 524, 564, 1101, 1499, 1562
HpyCH4III ACNGT 1 cut(s) 1100
HpyCH4IV ACGT 1 cut(s) 298
HpyCH4V TGCA 7 cut(s) 459, 510, 651, 795, 1184, 1325, 1346
HpyF10VI GCNNNNNNNGC 7 cut(s) 456, 501, 510, 519, 623, 987, 1352
HpyF3I CTNAG 5 cut(s) 9, 186, 627, 926, 1236
HpySE526I ACGT 1 cut(s) 298
Hsp92I GRCGYC 1 cut(s) 316
Hsp92II CATG 8 cut(s) 49, 120, 804, 854, 871, 915, 1262, 1417
Ksp22I TGATCA 3 cut(s) 42, 385, 1429
LmnI GCTCC 3 cut(s) 500, 509, 1385
Lsp1109I GCAGC 8 cut(s) 351, 522, 657, 688, 958, 1048, 1217, 1367
LweI GCATC 2 cut(s) 804, 1334
MabI ACCWGGT 1 cut(s) 992
MaeI CTAG 2 cut(s) 236, 1352
MaeII ACGT 1 cut(s) 298
MaeIII GTNAC 6 cut(s) 53, 181, 347, 996, 1126, 1139
MflI RGATCY 4 cut(s) 13, 1246, 1334, 1456
MhlI GDGCHC 1 cut(s) 992
MluCI AATT 8 cut(s) 20, 190, 258, 843, 932, 1040, 1159, 1470
MlyI GAGTC 1 cut(s) 1439
MmeI TCCRAC 1 cut(s) 1314
Mph1103I ATGCAT 2 cut(s) 797, 1327
MroXI GAANNNNTTC 1 cut(s) 1522
MseI TTAA 8 cut(s) 198, 212, 525, 684, 1019, 1119, 1439, 1473
MspA1I CMGCKG 2 cut(s) 949, 1230
MspCI CTTAAG 1 cut(s) 683
MspI CCGG 2 cut(s) 85, 489
MspR9I CCNGG 6 cut(s) 306, 489, 906, 994, 1052, 1179
MvaI CCWGG 5 cut(s) 306, 906, 994, 1052, 1179
MvnI CGCG 1 cut(s) 696
MwoI GCNNNNNNNGC 7 cut(s) 456, 501, 510, 519, 623, 987, 1352
NciI CCSGG 1 cut(s) 489
NcoI CCATGG 2 cut(s) 850, 911
NlaIII CATG 8 cut(s) 49, 120, 804, 854, 871, 915, 1262, 1417
NlaIV GGNNCC 1 cut(s) 991
NmuCI GTSAC 6 cut(s) 53, 181, 347, 996, 1126, 1139
NsiI ATGCAT 2 cut(s) 797, 1327
NspV TTCGAA 1 cut(s) 358
PaqCI CACCTGC 1 cut(s) 1290
PceI AGGCCT 1 cut(s) 1401
PdmI GAANNNNTTC 1 cut(s) 1522
PfeI GAWTC 5 cut(s) 28, 470, 538, 620, 916
PflMI CCANNNNNTGG 1 cut(s) 813
PfoI TCCNGGA 1 cut(s) 304
PkrI GCNGC 8 cut(s) 366, 512, 672, 703, 948, 1038, 1232, 1357
PleI GAGTC 1 cut(s) 1439
PpsI GAGTC 1 cut(s) 1439
PshBI ATTAAT 1 cut(s) 1473
PsiI TTATAA 1 cut(s) 71
Psp6I CCWGG 5 cut(s) 304, 904, 992, 1050, 1177
PspEI GGTNACC 1 cut(s) 996
PspGI CCWGG 5 cut(s) 304, 904, 992, 1050, 1177
PspN4I GGNNCC 1 cut(s) 991
PspPI GGNCC 2 cut(s) 804, 908
PstI CTGCAG 1 cut(s) 512
PsuI RGATCY 4 cut(s) 13, 1246, 1334, 1456
PvuII CAGCTG 2 cut(s) 949, 1230
RsaI GTAC 6 cut(s) 101, 133, 332, 479, 544, 1194
RsaNI GTAC 6 cut(s) 100, 132, 331, 478, 543, 1193
SaqAI TTAA 8 cut(s) 198, 212, 525, 684, 1019, 1119, 1439, 1473
SatI GCNGC 8 cut(s) 365, 511, 671, 702, 947, 1037, 1231, 1356
Sau96I GGNCC 2 cut(s) 804, 908
SchI GAGTC 1 cut(s) 1439
ScrFI CCNGG 6 cut(s) 306, 489, 906, 994, 1052, 1179
SduI GDGCHC 1 cut(s) 992
SexAI ACCWGGT 1 cut(s) 992
SfaNI GCATC 2 cut(s) 804, 1334
SfcI CTRYAG 3 cut(s) 508, 828, 899
SfuI TTCGAA 1 cut(s) 358
SinI GGWCC 1 cut(s) 804
SmlI CTYRAG 4 cut(s) 92, 596, 683, 959
SmoI CTYRAG 4 cut(s) 92, 596, 683, 959
Sse9I AATT 8 cut(s) 20, 190, 258, 843, 932, 1040, 1159, 1470
SseBI AGGCCT 1 cut(s) 1401
SsiI CCGC 2 cut(s) 696, 817
SspI AATATT 2 cut(s) 355, 1578
SspMI CTAG 2 cut(s) 236, 1352
StuI AGGCCT 1 cut(s) 1401
StyD4I CCNGG 6 cut(s) 304, 487, 904, 992, 1050, 1177
StyI CCWWGG 3 cut(s) 850, 911, 1383
TaaI ACNGT 1 cut(s) 1100
TaiI ACGT 1 cut(s) 301
TaqI TCGA 2 cut(s) 153, 358
TaqII GACCGA 1 cut(s) 41
TasI AATT 8 cut(s) 20, 190, 258, 843, 932, 1040, 1159, 1470
TatI WGTACW 1 cut(s) 477
TfiI GAWTC 5 cut(s) 28, 470, 538, 620, 916
Tru1I TTAA 8 cut(s) 198, 212, 525, 684, 1019, 1119, 1439, 1473
Tru9I TTAA 8 cut(s) 198, 212, 525, 684, 1019, 1119, 1439, 1473
TseFI GTSAC 6 cut(s) 53, 181, 347, 996, 1126, 1139
TseI GCWGC 8 cut(s) 364, 510, 670, 701, 946, 1036, 1230, 1355
Tsp45I GTSAC 6 cut(s) 53, 181, 347, 996, 1126, 1139
TspDTI ATGAA 5 cut(s) 267, 668, 812, 876, 884
TspGWI ACGGA 2 cut(s) 92, 420
Van91I CCANNNNNTGG 1 cut(s) 813
Vha464I CTTAAG 1 cut(s) 683
VpaK11BI GGWCC 1 cut(s) 804
VspI ATTAAT 1 cut(s) 1473
XapI RAATTY 2 cut(s) 20, 190
XcmI CCANNNNNNNNNTGG 1 cut(s) 902
XmiI GTMKAC 1 cut(s) 582
XmnI GAANNNNTTC 1 cut(s) 1522
XspI CTAG 2 cut(s) 236, 1352
Zsp2I ATGCAT 2 cut(s) 797, 1327
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.