Rh7AG411300

Box C D snoRNA protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7A
OG0006202
Physical Location & Seq
Forward (+)
55081139 .. 55082395
1257 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7AG411300.1

Sequence Viewer

Length: 720 bp
ATGAACCTCTCCTCTGTTCTTGAAGACCATCTACAGCCTGGCCCATGGAATCATCAGCTGAGGCAATTCTGTATAGAGCAGCTGGATTCTCTCAGACTTTTTATTCGTAAACGCCCAAAGGGCACCAGGTCCCCTTTCCGTGAGCTAGATTTAAGAGTTCCAATCAGGCAGCAGTTAGCCAACCTGGATATTTTGGAATATCCTGTCATATATGTTTTTCTTCCTTCACACCGTATTGATTTTGAAGTAGTTAAAGATGTCACATGTAATGTTCAGAAACAAGAGCTTCAAAATTATGGAAGTAATGACCCAGGTGCAGAAGGTGTACCCTTTAAGGAGGAGGAAATAGAAGAGGACAACAGCTGCCCTAAGGTGTTAGATCTAAAGGGACATGAGACTTCAGTTTCCCTGCCTCATATTTCCAACGACAGCAGGTGTGACAAAGGGATAAGTAATGCCTCAGATAGATCTTTGTCTGCAACACTAGCAGCAGAAAATGGTTCACATTCCAGCTCCAAGGATAAGGAACACGGCCTTTTTGAAGACATGGAGTTTGATTTTGATCAAGGCTTAATAGACTCGTATTCAGATCTTATTGCTGAAATTAATCCTGATGATTTTCTTGATTTGGATGGTGAAGGGATAGAAAGAAATCTTTCAGGTATCAGGGATTTCTTATTGTCAGATGATGATATAGAGGAAGGGGAAATATTAGAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
TIC20 zf-HIT

Protein Analysis

239

Amino Acids

27.1

Weight (kDa)

4.45

Isoelectric Point (pI)

57.17

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
BCD1 PF25790 2 - 83 3e-20 BCD1 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 423
Acc36I ACCTGC 1 cut(s) 423
AccB1I GGYRCC 1 cut(s) 122
AcuI CTGAAG 1 cut(s) 384
AfaI GTAC 1 cut(s) 327
AflIII ACRYGT 1 cut(s) 263
AgsI TTSAA 4 cut(s) 23, 245, 290, 542
AjnI CCWGG 4 cut(s) 37, 125, 183, 310
AluBI AGCT 6 cut(s) 58, 82, 145, 286, 363, 513
AluI AGCT 6 cut(s) 58, 82, 145, 286, 363, 513
Alw26I GTCTC 1 cut(s) 389
AoxI GGCC 2 cut(s) 40, 532
ApeKI GCWGC 4 cut(s) 79, 169, 363, 488
ArsI GACNNNNNNTTYG 4 cut(s) 87, 119, 536, 568
AseI ATTAAT 1 cut(s) 606
Asp700I GAANNNNTTC 1 cut(s) 655
AspS9I GGNCC 2 cut(s) 41, 129
AsuHPI GGTGA 1 cut(s) 647
AvaII GGWCC 1 cut(s) 129
AxyI CCTNAGG 1 cut(s) 369
BaeGI GKGCMC 1 cut(s) 125
BanI GGYRCC 1 cut(s) 122
BarI GAAGNNNNNNTAC 2 cut(s) 15, 47
BbsI GAAGAC 2 cut(s) 30, 549
BbvCI CCTCAGC 1 cut(s) 59
BbvI GCAGC 4 cut(s) 91, 181, 350, 500
BccI CCATC 2 cut(s) 36, 626
BceAI ACGGC 1 cut(s) 547
BciT130I CCWGG 4 cut(s) 39, 127, 185, 312
BclI TGATCA 1 cut(s) 562
BcoDI GTCTC 1 cut(s) 389
BfaI CTAG 2 cut(s) 146, 485
BfmI CTRYAG 1 cut(s) 32
BfuAI ACCTGC 1 cut(s) 423
BglI GCCNNNNNGGC 1 cut(s) 120
BglII AGATCT 3 cut(s) 379, 467, 589
BisI GCNGC 4 cut(s) 80, 170, 364, 489
BlsI GCNGC 4 cut(s) 81, 171, 365, 490
Bme1390I CCNGG 4 cut(s) 39, 127, 185, 312
Bme18I GGWCC 1 cut(s) 129
BmgT120I GGNCC 2 cut(s) 41, 129
BmiI GGNNCC 2 cut(s) 124, 131
BmrFI CCNGG 4 cut(s) 39, 127, 185, 312
BpiI GAAGAC 2 cut(s) 30, 549
Bpu10I CCTNAGC 1 cut(s) 59
BsaBI GATNNNNATC 1 cut(s) 561
BsaJI CCNNGG 3 cut(s) 44, 310, 516
Bse21I CCTNAGG 1 cut(s) 369
Bse8I GATNNNNATC 1 cut(s) 561
BseBI CCWGG 4 cut(s) 39, 127, 185, 312
BseDI CCNNGG 3 cut(s) 44, 310, 516
BseGI GGATG 1 cut(s) 637
BseJI GATNNNNATC 1 cut(s) 561
BseMII CTCAG 3 cut(s) 50, 106, 474
BseRI GAGGAG 1 cut(s) 353
BseSI GKGCMC 1 cut(s) 125
BseXI GCAGC 4 cut(s) 91, 181, 350, 500
BsgI GTGCAG 1 cut(s) 336
BshFI GGCC 2 cut(s) 42, 534
BshNI GGYRCC 1 cut(s) 122
BslFI GGGAC 2 cut(s) 115, 402
BsmAI GTCTC 1 cut(s) 389
BsmFI GGGAC 2 cut(s) 115, 402
BsnI GGCC 2 cut(s) 42, 534
Bsp1286I GDGCHC 1 cut(s) 125
Bsp143I GATC 4 cut(s) 379, 467, 562, 589
Bsp19I CCATGG 1 cut(s) 44
BspANI GGCC 2 cut(s) 42, 534
BspCNI CTCAG 3 cut(s) 51, 105, 473
BspLI GGNNCC 2 cut(s) 124, 131
BspMI ACCTGC 1 cut(s) 423
BspT107I GGYRCC 1 cut(s) 122
BssECI CCNNGG 3 cut(s) 44, 310, 516
BssMI GATC 4 cut(s) 379, 467, 562, 589
BssT1I CCWWGG 2 cut(s) 44, 516
Bst2UI CCWGG 4 cut(s) 39, 127, 185, 312
Bst4CI ACNGT 1 cut(s) 233
Bst6I CTCTTC 1 cut(s) 345
BstDEI CTNAG 4 cut(s) 59, 92, 369, 460
BstDSI CCRYGG 1 cut(s) 44
BstF5I GGATG 1 cut(s) 637
BstKTI GATC 4 cut(s) 382, 470, 565, 592
BstMAI GTCTC 1 cut(s) 389
BstMBI GATC 4 cut(s) 379, 467, 562, 589
BstMWI GCNNNNNNNGC 2 cut(s) 120, 485
BstNI CCWGG 4 cut(s) 39, 127, 185, 312
BstNSI RCATGY 1 cut(s) 267
BstSCI CCNGG 4 cut(s) 37, 125, 183, 310
BstSFI CTRYAG 1 cut(s) 32
BstSLI GKGCMC 1 cut(s) 125
BstV1I GCAGC 4 cut(s) 91, 181, 350, 500
BstV2I GAAGAC 2 cut(s) 30, 549
BstX2I RGATCY 3 cut(s) 379, 467, 589
BstYI RGATCY 3 cut(s) 379, 467, 589
Bsu36I CCTNAGG 1 cut(s) 369
BsuRI GGCC 2 cut(s) 42, 534
BtgI CCRYGG 1 cut(s) 44
BtsCI GGATG 1 cut(s) 637
BveI ACCTGC 1 cut(s) 423
Cfr13I GGNCC 2 cut(s) 41, 129
CsiI ACCWGGT 1 cut(s) 125
Csp6I GTAC 1 cut(s) 326
CviAII CATG 4 cut(s) 45, 264, 392, 547
CviQI GTAC 1 cut(s) 326
DdeI CTNAG 4 cut(s) 59, 92, 369, 460
DpnI GATC 4 cut(s) 381, 469, 564, 591
DpnII GATC 4 cut(s) 379, 467, 562, 589
Eam1104I CTCTTC 1 cut(s) 345
EarI CTCTTC 1 cut(s) 345
Eco130I CCWWGG 2 cut(s) 44, 516
Eco47I GGWCC 1 cut(s) 129
Eco57I CTGAAG 1 cut(s) 384
Eco81I CCTNAGG 1 cut(s) 369
EcoO109I RGGNCCY 1 cut(s) 129
EcoRII CCWGG 4 cut(s) 37, 125, 183, 310
EcoT14I CCWWGG 2 cut(s) 44, 516
ErhI CCWWGG 2 cut(s) 44, 516
FaeI CATG 4 cut(s) 48, 267, 395, 550
FaqI GGGAC 2 cut(s) 115, 402
FatI CATG 4 cut(s) 44, 263, 391, 546
FbaI TGATCA 1 cut(s) 562
Fnu4HI GCNGC 4 cut(s) 80, 170, 364, 489
FokI GGATG 1 cut(s) 644
Fsp4HI GCNGC 4 cut(s) 80, 170, 364, 489
FspBI CTAG 2 cut(s) 146, 485
GluI GCNGC 4 cut(s) 80, 170, 364, 489
HaeIII GGCC 2 cut(s) 42, 534
Hin1II CATG 4 cut(s) 48, 267, 395, 550
HinfI GANTC 3 cut(s) 49, 86, 578
HphI GGTGA 1 cut(s) 647
Hpy166II GTNNAC 3 cut(s) 110, 326, 503
Hpy188I TCNGA 5 cut(s) 95, 276, 463, 589, 685
Hpy188III TCNNGA 3 cut(s) 20, 611, 623
Hpy8I GTNNAC 3 cut(s) 110, 326, 503
HpyAV CCTTC 4 cut(s) 234, 314, 632, 695
HpyCH4III ACNGT 1 cut(s) 233
HpyCH4V TGCA 2 cut(s) 317, 479
HpyF10VI GCNNNNNNNGC 2 cut(s) 120, 485
HpyF3I CTNAG 4 cut(s) 59, 92, 369, 460
Hsp92II CATG 4 cut(s) 48, 267, 395, 550
Ksp22I TGATCA 1 cut(s) 562
Kzo9I GATC 4 cut(s) 379, 467, 562, 589
LmnI GCTCC 1 cut(s) 518
Lsp1109I GCAGC 4 cut(s) 91, 181, 350, 500
MabI ACCWGGT 1 cut(s) 125
MaeI CTAG 2 cut(s) 146, 485
MaeIII GTNAC 2 cut(s) 259, 437
MalI GATC 4 cut(s) 381, 469, 564, 591
MboI GATC 4 cut(s) 379, 467, 562, 589
MboII GAAGA 4 cut(s) 35, 212, 362, 554
MflI RGATCY 3 cut(s) 379, 467, 589
MhlI GDGCHC 1 cut(s) 125
MluCI AATT 3 cut(s) 65, 292, 603
MlyI GAGTC 1 cut(s) 572
MmeI TCCRAC 1 cut(s) 447
MnlI CCTC 9 cut(s) 17, 22, 54, 331, 334, 346, 423, 469, 691
MroXI GAANNNNTTC 1 cut(s) 655
MseI TTAA 5 cut(s) 152, 252, 333, 572, 606
MspA1I CMGCKG 3 cut(s) 58, 82, 363
MspR9I CCNGG 4 cut(s) 39, 127, 185, 312
MvaI CCWGG 4 cut(s) 39, 127, 185, 312
MwoI GCNNNNNNNGC 2 cut(s) 120, 485
NcoI CCATGG 1 cut(s) 44
NdeII GATC 4 cut(s) 379, 467, 562, 589
NlaIII CATG 4 cut(s) 48, 267, 395, 550
NlaIV GGNNCC 2 cut(s) 124, 131
NmuCI GTSAC 2 cut(s) 259, 437
NspI RCATGY 1 cut(s) 267
PaqCI CACCTGC 1 cut(s) 423
PciI ACATGT 1 cut(s) 263
PdmI GAANNNNTTC 1 cut(s) 655
PfeI GAWTC 2 cut(s) 49, 86
PkrI GCNGC 4 cut(s) 81, 171, 365, 490
PleI GAGTC 1 cut(s) 572
PpsI GAGTC 1 cut(s) 572
PpuMI RGGWCCY 1 cut(s) 129
PscI ACATGT 1 cut(s) 263
PshBI ATTAAT 1 cut(s) 606
Psp5II RGGWCCY 1 cut(s) 129
Psp6I CCWGG 4 cut(s) 37, 125, 183, 310
PspGI CCWGG 4 cut(s) 37, 125, 183, 310
PspN4I GGNNCC 2 cut(s) 124, 131
PspPI GGNCC 2 cut(s) 41, 129
PspPPI RGGWCCY 1 cut(s) 129
PsuI RGATCY 3 cut(s) 379, 467, 589
PvuII CAGCTG 3 cut(s) 58, 82, 363
RsaI GTAC 1 cut(s) 327
RsaNI GTAC 1 cut(s) 326
SaqAI TTAA 5 cut(s) 152, 252, 333, 572, 606
SatI GCNGC 4 cut(s) 80, 170, 364, 489
Sau3AI GATC 4 cut(s) 379, 467, 562, 589
Sau96I GGNCC 2 cut(s) 41, 129
SchI GAGTC 1 cut(s) 572
ScrFI CCNGG 4 cut(s) 39, 127, 185, 312
SduI GDGCHC 1 cut(s) 125
SexAI ACCWGGT 1 cut(s) 125
SfcI CTRYAG 1 cut(s) 32
SinI GGWCC 1 cut(s) 129
Sse9I AATT 3 cut(s) 65, 292, 603
SspI AATATT 1 cut(s) 711
SspMI CTAG 2 cut(s) 146, 485
StyD4I CCNGG 4 cut(s) 37, 125, 183, 310
StyI CCWWGG 2 cut(s) 44, 516
TaaI ACNGT 1 cut(s) 233
TasI AATT 3 cut(s) 65, 292, 603
TfiI GAWTC 2 cut(s) 49, 86
Tru1I TTAA 5 cut(s) 152, 252, 333, 572, 606
Tru9I TTAA 5 cut(s) 152, 252, 333, 572, 606
TseFI GTSAC 2 cut(s) 259, 437
TseI GCWGC 4 cut(s) 79, 169, 363, 488
Tsp45I GTSAC 2 cut(s) 259, 437
TspDTI ATGAA 1 cut(s) 17
TspGWI ACGGA 1 cut(s) 128
VpaK11BI GGWCC 1 cut(s) 129
VspI ATTAAT 1 cut(s) 606
XceI RCATGY 1 cut(s) 267
XcmI CCANNNNNNNNNTGG 1 cut(s) 35
XmnI GAANNNNTTC 1 cut(s) 655
XspI CTAG 2 cut(s) 146, 485
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.