Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr07

Orthogroup ID

OG0006202

Physical Location & Seq

Genomic Coordinates Forward (+)

326777 .. 330103

Gene Structure 3327 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD07G1003300.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1242 bp

ATGGAGAAAGGCGGAGGAGAAGCAGGTACAGCAAATCCAAACCCCAAAGTATGCGAAGAGTGCAGAGAGAAAGCATCCAAGTACAAATGCCCAGGCTGCTCCGTACGCTCCTGCAGCCTTCCGTGCGTTAAAGCTCACAAGCTTCGCACTGGCTGTACGGGCAAGAGGCCCCAAACGAGCTTCGTCCCCCTCTCTCAGATCGACGACAATCAGCTCCTTTCAGATTACAATTTGCTAGAGGAAGTGAAGAGGGTTGCTGAGTCTGCTCAGAGATTGAGAAATAAGTTGTGCAGATACAATAATTTTAGGCTACCCTTTTACCTTAAAAGCCTTCGGAGTGCTGCTGCCAGTCGCAGGACAAAACTCTTATTTCTACCAAGTGGAATGTCAAAAAGGGAGAAAAACCAAACTCGATATGATCAAAGGAAGAAATGCATCTCCTGGACAATTGAATGGCGATTTCATTCAACGGATGTTGTTTTAATTGACCATGAAGTAAATGAAAACATGAACATCTGCTCTGTTATTGAGAACCATCTAAAACCTGGGCCATGGAATCATCACCTAAAGCTATTCTGTGAGGAACAGCTTGACTCTCTCAAGCTTTTCGTTCGTAAATATCCGAAGGGGGCTAGGTCACCTTTCTGTGAGTTGGATGTAAGAGTTCCGATAAGGCAGCAGTTAGCAAACTTAGTTATTTTGGAATACCCTGTCATTTATGTTTTTCTCCCTTCGCAGAGTCTTGATTTTGAAGTAGTTAAAAATTCCCCTCCTACTTTCGGCAAACCAGAGCTTAAGACTTATGGAAGAAATGATTTGAGCGCAGGAGGTGTTCACTTTAAGGAGGAGGAAATAGAAGAAGACAACAGCTATCCTAAGGTCTTTGATCTCATGAAACATGTGACTTCAAGTTCCCCACCTCATATCTCTAATAAAAGGAGGTGCGAGAAACCACTCACTGATTCATTTGCTAGGCCTTTGTCTACAACTGTGGAAACTGGCAACGATTCACATTCCAGCTCCGATGCTAAGAAGCAAGTGCTTTTTGAAGACATGGACTTTGATTTTGATCAAGGCTTAATAGATGAGTACTCAGATCTTATGGCAGAAATTAATCCTGATGATTTTCTTGATTTGGAAGGCGAATTTAGCAAGGAAGGAGTAGCAGAAAGAAATCTTTCGAGTGTCAGGAAGTTCTTATTAGCAGATGACGACATAGAGGAGGGAGAAATTTTAGAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TIC20 zf-HIT

Protein Analysis

414

Amino Acids

47.21

Weight (kDa)

6.13

Isoelectric Point (pI)

56.29

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-HIT	PF04438	16 - 44	1e-07	HIT zinc finger
BCD1	PF25790	109 - 252	2.9e-52	BCD1 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006202)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G04945 AT1G04945 AT1G04945 AT1G04945
fragaria_vesca	FvH4_5g32720
malus_domestica	MD02G1318000.v1.1 MD07G1003300.v1.1
prunus_persica	Prupe.2G005000_v2.0.a1 Prupe.2G005000_v2.0.a1 Prupe.2G005000_v2.0.a1 Prupe.2G005000_v2.0.a1 Prupe.2G005000_v2.0.a1 Prupe.2G005000_v2.0.a1
pyrus_communis	pycom02g26620 pycom07g00330
rosa_chinensis	RchiOBHm_Chr7g0230361
rosa_laevigata	RLG00000001498
rosa_multiflora	Rmu_sc0002541.1_g000034 Rmu_sc0007103.1_g000018
rosa_roxburghii	Rroxscaffold_3G00230200
rosa_rugosa	Rorug07G0260200
rosa_samantha	Rh7AG409600 Rh7AG411300 Rh7BG389400 Rh7CG429000 Rh7DG407600
rosa_wichuraiana	Rw7G034210

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	14
AccI	GTMKAC	1 cut(s)	983
AciI	CCGC	1 cut(s)	12
AcsI	RAATTY	3 cut(s)	763, 1145, 1230
AfaI	GTAC	5 cut(s)	28, 83, 105, 157, 1091
AfiI	CCNNNNNNNGG	2 cut(s)	354, 779
AflII	CTTAAG	1 cut(s)	794
AflIII	ACRYGT	1 cut(s)	898
AgsI	TTSAA	5 cut(s)	452, 468, 752, 909, 1049
AjnI	CCWGG	3 cut(s)	91, 440, 544
AoxI	GGCC	3 cut(s)	167, 548, 974
ApeKI	GCWGC	5 cut(s)	96, 114, 341, 344, 676
ApoI	RAATTY	3 cut(s)	763, 1145, 1230
ArsI	GACNNNNNNTTYG	4 cut(s)	1043, 1049, 1075, 1081
AseI	ATTAAT	1 cut(s)	1113
Asp700I	GAANNNNTTC	1 cut(s)	1177
AspLEI	GCGC	1 cut(s)	824
AspS9I	GGNCC	2 cut(s)	168, 548
AsuHPI	GGTGA	2 cut(s)	554, 630
AxyI	CCTNAGG	1 cut(s)	876
BbsI	GAAGAC	2 cut(s)	867, 1056
BbvI	GCAGC	5 cut(s)	83, 126, 328, 331, 688
BccI	CCATC	1 cut(s)	543
BciT130I	CCWGG	3 cut(s)	93, 442, 546
BclI	TGATCA	2 cut(s)	418, 1069
BfaI	CTAG	3 cut(s)	236, 633, 972
BfmI	CTRYAG	1 cut(s)	112
BfrI	CTTAAG	1 cut(s)	794
BfuAI	ACCTGC	1 cut(s)	14
BglII	AGATCT	1 cut(s)	1096
BisI	GCNGC	5 cut(s)	97, 115, 342, 345, 677
BlsI	GCNGC	5 cut(s)	98, 116, 343, 346, 678
BmcAI	AGTACT	1 cut(s)	1091
Bme1390I	CCNGG	3 cut(s)	93, 442, 546
BmgT120I	GGNCC	2 cut(s)	168, 548
BmiI	GGNNCC	1 cut(s)	170
BmrFI	CCNGG	3 cut(s)	93, 442, 546
BmsI	GCATC	3 cut(s)	83, 444, 1015
BpiI	GAAGAC	2 cut(s)	867, 1056
BpuEI	CTTGAG	1 cut(s)	584
BsaBI	GATNNNNATC	1 cut(s)	1068
BsaJI	CCNNGG	3 cut(s)	91, 545, 551
Bsc4I	CCNNNNNNNGG	2 cut(s)	354, 779
Bse1I	ACTGG	3 cut(s)	154, 348, 1003
Bse21I	CCTNAGG	1 cut(s)	876
Bse8I	GATNNNNATC	1 cut(s)	1068
BseBI	CCWGG	3 cut(s)	93, 442, 546
BseDI	CCNNGG	3 cut(s)	91, 545, 551
BseGI	GGATG	3 cut(s)	74, 478, 661
BseJI	GATNNNNATC	1 cut(s)	1068
BseLI	CCNNNNNNNGG	2 cut(s)	354, 779
BseMII	CTCAG	4 cut(s)	209, 249, 281, 1107
BseNI	ACTGG	3 cut(s)	154, 348, 1003
BseRI	GAGGAG	3 cut(s)	30, 860, 1235
BseXI	GCAGC	5 cut(s)	83, 126, 328, 331, 688
BsgI	GTGCAG	2 cut(s)	82, 310
BshFI	GGCC	3 cut(s)	169, 550, 976
BsiWI	CGTACG	1 cut(s)	103
BslFI	GGGAC	1 cut(s)	170
BslI	CCNNNNNNNGG	2 cut(s)	354, 779
BsmFI	GGGAC	1 cut(s)	170
BsnI	GGCC	3 cut(s)	169, 550, 976
Bsp143I	GATC	5 cut(s)	198, 418, 886, 1069, 1096
Bsp19I	CCATGG	1 cut(s)	551
BspACI	CCGC	1 cut(s)	12
BspANI	GGCC	3 cut(s)	169, 550, 976
BspCNI	CTCAG	4 cut(s)	208, 250, 280, 1106
BspHI	TCATGA	1 cut(s)	891
BspLI	GGNNCC	1 cut(s)	170
BspMAI	CTGCAG	1 cut(s)	116
BspMI	ACCTGC	1 cut(s)	14
BspTI	CTTAAG	1 cut(s)	794
BsrI	ACTGG	3 cut(s)	154, 348, 1003
BssECI	CCNNGG	3 cut(s)	91, 545, 551
BssMI	GATC	5 cut(s)	198, 418, 886, 1069, 1096
BssT1I	CCWWGG	1 cut(s)	551
Bst2UI	CCWGG	3 cut(s)	93, 442, 546
Bst4CI	ACNGT	1 cut(s)	991
Bst6I	CTCTTC	2 cut(s)	51, 242
BstAFI	CTTAAG	1 cut(s)	794
BstDEI	CTNAG	7 cut(s)	195, 258, 267, 691, 876, 1029, 1093
BstDSI	CCRYGG	1 cut(s)	551
BstEII	GGTNACC	1 cut(s)	636
BstF5I	GGATG	3 cut(s)	74, 478, 661
BstHHI	GCGC	1 cut(s)	824
BstKTI	GATC	5 cut(s)	201, 421, 889, 1072, 1099
BstMBI	GATC	5 cut(s)	198, 418, 886, 1069, 1096
BstMWI	GCNNNNNNNGC	9 cut(s)	29, 60, 96, 105, 114, 123, 159, 263, 1149
BstNI	CCWGG	3 cut(s)	93, 442, 546
BstNSI	RCATGY	1 cut(s)	902
BstPI	GGTNACC	1 cut(s)	636
BstSCI	CCNGG	3 cut(s)	91, 440, 544
BstSFI	CTRYAG	1 cut(s)	112
BstV1I	GCAGC	5 cut(s)	83, 126, 328, 331, 688
BstV2I	GAAGAC	2 cut(s)	867, 1056
BstX2I	RGATCY	1 cut(s)	1096
BstYI	RGATCY	1 cut(s)	1096
Bsu36I	CCTNAGG	1 cut(s)	876
BsuRI	GGCC	3 cut(s)	169, 550, 976
BtgI	CCRYGG	1 cut(s)	551
BtsCI	GGATG	3 cut(s)	74, 478, 661
BtsIMutI	CAGTG	2 cut(s)	147, 957
BveI	ACCTGC	1 cut(s)	14
CciI	TCATGA	1 cut(s)	891
CfoI	GCGC	1 cut(s)	824
Cfr13I	GGNCC	2 cut(s)	168, 548
Csp6I	GTAC	5 cut(s)	27, 82, 104, 156, 1090
CviAII	CATG	6 cut(s)	491, 508, 552, 892, 899, 1054
CviQI	GTAC	5 cut(s)	27, 82, 104, 156, 1090
DdeI	CTNAG	7 cut(s)	195, 258, 267, 691, 876, 1029, 1093
DpnI	GATC	5 cut(s)	200, 420, 888, 1071, 1098
DpnII	GATC	5 cut(s)	198, 418, 886, 1069, 1096
Eam1104I	CTCTTC	2 cut(s)	51, 242
EarI	CTCTTC	2 cut(s)	51, 242
EciI	GGCGGA	1 cut(s)	27
Eco130I	CCWWGG	1 cut(s)	551
Eco147I	AGGCCT	1 cut(s)	976
Eco81I	CCTNAGG	1 cut(s)	876
Eco91I	GGTNACC	1 cut(s)	636
EcoO109I	RGGNCCY	1 cut(s)	168
EcoO65I	GGTNACC	1 cut(s)	636
EcoRII	CCWGG	3 cut(s)	91, 440, 544
EcoT14I	CCWWGG	1 cut(s)	551
EcoT22I	ATGCAT	1 cut(s)	437
ErhI	CCWWGG	1 cut(s)	551
FaeI	CATG	6 cut(s)	494, 511, 555, 895, 902, 1057
FaqI	GGGAC	1 cut(s)	170
FatI	CATG	6 cut(s)	490, 507, 551, 891, 898, 1053
FbaI	TGATCA	2 cut(s)	418, 1069
FblI	GTMKAC	1 cut(s)	983
Fnu4HI	GCNGC	5 cut(s)	97, 115, 342, 345, 677
FokI	GGATG	3 cut(s)	61, 485, 668
Fsp4HI	GCNGC	5 cut(s)	97, 115, 342, 345, 677
FspBI	CTAG	3 cut(s)	236, 633, 972
GlaI	GCGC	1 cut(s)	823
GluI	GCNGC	5 cut(s)	97, 115, 342, 345, 677
HaeIII	GGCC	3 cut(s)	169, 550, 976
HhaI	GCGC	1 cut(s)	824
Hin1II	CATG	6 cut(s)	494, 511, 555, 895, 902, 1057
Hin6I	GCGC	1 cut(s)	822
HinP1I	GCGC	1 cut(s)	822
HindIII	AAGCTT	2 cut(s)	140, 602
HinfI	GANTC	6 cut(s)	260, 556, 593, 739, 962, 1007
HphI	GGTGA	2 cut(s)	554, 630
Hpy166II	GTNNAC	2 cut(s)	835, 984
Hpy188I	TCNGA	8 cut(s)	198, 223, 270, 336, 624, 669, 1024, 1096
Hpy188III	TCNNGA	5 cut(s)	743, 892, 1118, 1130, 1189
Hpy8I	GTNNAC	2 cut(s)	835, 984
Hpy99I	CGWCG	1 cut(s)	206
HpyAV	CCTTC	6 cut(s)	128, 341, 619, 741, 1133, 1151
HpyCH4III	ACNGT	1 cut(s)	991
HpyCH4V	TGCA	4 cut(s)	63, 114, 291, 435
HpyF10VI	GCNNNNNNNGC	9 cut(s)	29, 60, 96, 105, 114, 123, 159, 263, 1149
HpyF3I	CTNAG	7 cut(s)	195, 258, 267, 691, 876, 1029, 1093
Hsp92II	CATG	6 cut(s)	494, 511, 555, 895, 902, 1057
HspAI	GCGC	1 cut(s)	822
Ksp22I	TGATCA	2 cut(s)	418, 1069
Kzo9I	GATC	5 cut(s)	198, 418, 886, 1069, 1096
LmnI	GCTCC	4 cut(s)	104, 113, 219, 1025
Lsp1109I	GCAGC	5 cut(s)	83, 126, 328, 331, 688
LweI	GCATC	3 cut(s)	83, 444, 1015
MaeI	CTAG	3 cut(s)	236, 633, 972
MaeIII	GTNAC	2 cut(s)	636, 901
MalI	GATC	5 cut(s)	200, 420, 888, 1071, 1098
MboI	GATC	5 cut(s)	198, 418, 886, 1069, 1096
MboII	GAAGA	7 cut(s)	68, 259, 439, 819, 869, 872, 1061
MfeI	CAATTG	1 cut(s)	447
MflI	RGATCY	1 cut(s)	1096
MluCI	AATT	8 cut(s)	229, 301, 447, 483, 763, 1110, 1145, 1230
MlyI	GAGTC	3 cut(s)	269, 587, 748
MmeI	TCCRAC	1 cut(s)	633
Mph1103I	ATGCAT	1 cut(s)	437
MroXI	GAANNNNTTC	1 cut(s)	1177
MseI	TTAA	8 cut(s)	129, 324, 482, 759, 795, 840, 1079, 1113
MspCI	CTTAAG	1 cut(s)	794
MspR9I	CCNGG	3 cut(s)	93, 442, 546
MunI	CAATTG	1 cut(s)	447
MvaI	CCWGG	3 cut(s)	93, 442, 546
MwoI	GCNNNNNNNGC	9 cut(s)	29, 60, 96, 105, 114, 123, 159, 263, 1149
NcoI	CCATGG	1 cut(s)	551
NdeII	GATC	5 cut(s)	198, 418, 886, 1069, 1096
NlaIII	CATG	6 cut(s)	494, 511, 555, 895, 902, 1057
NlaIV	GGNNCC	1 cut(s)	170
NmuCI	GTSAC	2 cut(s)	636, 901
NsiI	ATGCAT	1 cut(s)	437
NspI	RCATGY	1 cut(s)	902
PagI	TCATGA	1 cut(s)	891
PceI	AGGCCT	1 cut(s)	976
PciI	ACATGT	1 cut(s)	898
PdmI	GAANNNNTTC	1 cut(s)	1177
PfeI	GAWTC	3 cut(s)	556, 962, 1007
Pfl23II	CGTACG	1 cut(s)	103
PfoI	TCCNGGA	1 cut(s)	440
PkrI	GCNGC	5 cut(s)	98, 116, 343, 346, 678
PleI	GAGTC	3 cut(s)	268, 587, 747
PpsI	GAGTC	3 cut(s)	268, 587, 747
PscI	ACATGT	1 cut(s)	898
PshBI	ATTAAT	1 cut(s)	1113
Psp6I	CCWGG	3 cut(s)	91, 440, 544
PspEI	GGTNACC	1 cut(s)	636
PspGI	CCWGG	3 cut(s)	91, 440, 544
PspLI	CGTACG	1 cut(s)	103
PspN4I	GGNNCC	1 cut(s)	170
PspPI	GGNCC	2 cut(s)	168, 548
PstI	CTGCAG	1 cut(s)	116
PsuI	RGATCY	1 cut(s)	1096
RsaI	GTAC	5 cut(s)	28, 83, 105, 157, 1091
RsaNI	GTAC	5 cut(s)	27, 82, 104, 156, 1090
SaqAI	TTAA	8 cut(s)	129, 324, 482, 759, 795, 840, 1079, 1113
SatI	GCNGC	5 cut(s)	97, 115, 342, 345, 677
Sau3AI	GATC	5 cut(s)	198, 418, 886, 1069, 1096
Sau96I	GGNCC	2 cut(s)	168, 548
ScaI	AGTACT	1 cut(s)	1091
SchI	GAGTC	3 cut(s)	269, 587, 748
ScrFI	CCNGG	3 cut(s)	93, 442, 546
SfaNI	GCATC	3 cut(s)	83, 444, 1015
SfcI	CTRYAG	1 cut(s)	112
SmlI	CTYRAG	2 cut(s)	599, 794
SmoI	CTYRAG	2 cut(s)	599, 794
Sse9I	AATT	8 cut(s)	229, 301, 447, 483, 763, 1110, 1145, 1230
SseBI	AGGCCT	1 cut(s)	976
SsiI	CCGC	1 cut(s)	12
SspMI	CTAG	3 cut(s)	236, 633, 972
StuI	AGGCCT	1 cut(s)	976
StyD4I	CCNGG	3 cut(s)	91, 440, 544
StyI	CCWWGG	1 cut(s)	551
TaaI	ACNGT	1 cut(s)	991
TaqI	TCGA	3 cut(s)	201, 412, 1181
TasI	AATT	8 cut(s)	229, 301, 447, 483, 763, 1110, 1145, 1230
TatI	WGTACW	2 cut(s)	81, 1089
TfiI	GAWTC	3 cut(s)	556, 962, 1007
Tru1I	TTAA	8 cut(s)	129, 324, 482, 759, 795, 840, 1079, 1113
Tru9I	TTAA	8 cut(s)	129, 324, 482, 759, 795, 840, 1079, 1113
TscAI	CASTG	2 cut(s)	154, 964
TseFI	GTSAC	2 cut(s)	636, 901
TseI	GCWGC	5 cut(s)	96, 114, 341, 344, 676
Tsp45I	GTSAC	2 cut(s)	636, 901
TspDTI	ATGAA	6 cut(s)	452, 507, 516, 524, 908, 954
TspGWI	ACGGA	3 cut(s)	91, 111, 485
TspRI	CASTG	2 cut(s)	154, 964
Vha464I	CTTAAG	1 cut(s)	794
VspI	ATTAAT	1 cut(s)	1113
XapI	RAATTY	3 cut(s)	763, 1145, 1230
XceI	RCATGY	1 cut(s)	902
XcmI	CCANNNNNNNNNTGG	1 cut(s)	542
XmiI	GTMKAC	1 cut(s)	983
XmnI	GAANNNNTTC	1 cut(s)	1177
XspI	CTAG	3 cut(s)	236, 633, 972
ZrmI	AGTACT	1 cut(s)	1091
Zsp2I	ATGCAT	1 cut(s)	437

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.