Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7C

Orthogroup ID

OG0006202

Physical Location & Seq

Genomic Coordinates Forward (+)

56072604 .. 56077727

Gene Structure 5124 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7CG429000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1212 bp

ATGGAGGAGGACGGAGGAGAGGCAAAGGCAATGTTATGCGAAGAGTGCAAAGCCAAAGAATCCAAGTACAAATGTCCCGGTTGCTGCATACGCTCCTGCAGCCTTCCCTGCGTTAAAGCCCACAAGATTCGTACATCTTGTACGGGCAAGAGAAGCCAAACCCACTTCGTACCCATCTCTCAGATGGATGATAATCTCCTCCTTTCGGACTACAATCTGCTTGAGGAAGTGAAGAGGGTTGCTGATTCTGCTCAGAGATTGAGGAATAAGTTGTGCAGATACAATAGTTTTAGGCTGCCTTTTTATCTTAAGAGCCTCCGCGGTGCTGCCTTCAGCCGCAGAACTAAACTCTTGTTTTTGCCTACTGGTATGTCAAAGAGGGACAAAAATCAGACCCGATACGACACAAGGAAGAAATGCATCACATGGACCATTGAGTGGCGGTTTCATTCTACAGATGTAGTTCTAATTGACCATGGAGTAAATGAAAACATGAACCTCTCCTCTGTTCTTGAAGACCATCTACAGCCTGGCCCATGGAATCATAAGCTGAGGCAATTCTGTATAGAGAAGCTGGATTGTCTCAAACTTTTTATTCGTAAACGCCCAAAGGGCACCAGGTCACCTTTTCATGAGTTAGATTTAAGAGTTCCAATTAGGCAGCAATTAGCCAACCTGGATATTTTGGAATACCCTGTCATCTATGTTTTTCTTCCTTCACACAGTATTGATTTTGAAGTCGTTAAAGATGTCACTCGTAATGTTCACAAACAAGAGCTTCATAATTATGGAAGTAATGACCCAGGTGCAGGAGGTGTACCCTTTAGGGAGGAGGAAATAGAAGAAGACAACAGCTGCCCTAAGGTGTTAGATCTAAAGGGACATGAGACTTCAGTTTCCCTGCCTCATATTTCCAACAACAGCAGGTGTGAGAAAGGGATAAATAATGCATCAGATAGATCTTTGTCTGCCACACTAGCAGCAGAAAATGGTTCACATTCCAGCTCCAAGGATAAGGAACAAGGCCTTTTTGAAGACATGGAGTTTGATTTTGATCAAGGCTTAATAGACTCGTATTCAGATCTGATTGCTGAAATTAATCCTGATGATTTTCTTGATTTGGATGGTGAAGGGATAGAAAAAAATCTTTCAGGTATCAGGGATTTCTTATTATCAGATGATGATATAGAGGAAGGGGAAATATTAGAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TIC20 zf-HIT

Protein Analysis

403

Amino Acids

46.02

Weight (kDa)

5.63

Isoelectric Point (pI)

56.22

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-HIT	PF04438	11 - 39	3.1e-06	HIT zinc finger
BCD1	PF25790	104 - 247	2.8e-50	BCD1 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006202)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G04945 AT1G04945 AT1G04945 AT1G04945
fragaria_vesca	FvH4_5g32720
malus_domestica	MD02G1318000.v1.1 MD07G1003300.v1.1
prunus_persica	Prupe.2G005000_v2.0.a1 Prupe.2G005000_v2.0.a1 Prupe.2G005000_v2.0.a1 Prupe.2G005000_v2.0.a1 Prupe.2G005000_v2.0.a1 Prupe.2G005000_v2.0.a1
pyrus_communis	pycom02g26620 pycom07g00330
rosa_chinensis	RchiOBHm_Chr7g0230361
rosa_laevigata	RLG00000001498
rosa_multiflora	Rmu_sc0002541.1_g000034 Rmu_sc0007103.1_g000018
rosa_roxburghii	Rroxscaffold_3G00230200
rosa_rugosa	Rorug07G0260200
rosa_samantha	Rh7AG409600 Rh7AG411300 Rh7BG389400 Rh7CG429000 Rh7DG407600
rosa_wichuraiana	Rw7G034210

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	915
Acc36I	ACCTGC	1 cut(s)	915
AccB1I	GGYRCC	1 cut(s)	614
AccB7I	CCANNNNNTGG	1 cut(s)	438
AccII	CGCG	1 cut(s)	321
AciI	CCGC	4 cut(s)	319, 321, 337, 442
AcuI	CTGAAG	2 cut(s)	316, 876
AfaI	GTAC	5 cut(s)	68, 133, 142, 171, 819
AfiI	CCNNNNNNNGG	3 cut(s)	205, 438, 809
AflII	CTTAAG	1 cut(s)	308
AgsI	TTSAA	3 cut(s)	515, 737, 1034
AjnI	CCWGG	4 cut(s)	529, 617, 675, 802
AluBI	AGCT	5 cut(s)	550, 574, 778, 855, 1005
AluI	AGCT	5 cut(s)	550, 574, 778, 855, 1005
Alw26I	GTCTC	2 cut(s)	587, 881
AoxI	GGCC	2 cut(s)	532, 1024
ApeKI	GCWGC	7 cut(s)	84, 99, 295, 326, 661, 855, 980
ArsI	GACNNNNNNTTYG	2 cut(s)	1028, 1060
AseI	ATTAAT	1 cut(s)	1098
AspS9I	GGNCC	2 cut(s)	429, 533
AsuC2I	CCSGG	1 cut(s)	78
AsuHPI	GGTGA	2 cut(s)	615, 1139
AvaII	GGWCC	1 cut(s)	429
AxyI	CCTNAGG	1 cut(s)	861
BaeGI	GKGCMC	1 cut(s)	617
BaeI	ACNNNNGTAYC	2 cut(s)	271, 304
BanI	GGYRCC	1 cut(s)	614
BarI	GAAGNNNNNNTAC	2 cut(s)	507, 539
BbsI	GAAGAC	3 cut(s)	522, 852, 1041
BbvCI	CCTCAGC	1 cut(s)	551
BbvI	GCAGC	7 cut(s)	71, 111, 282, 313, 673, 842, 992
BccI	CCATC	4 cut(s)	178, 182, 528, 1118
BciT130I	CCWGG	4 cut(s)	531, 619, 677, 804
BclI	TGATCA	1 cut(s)	1054
BcnI	CCSGG	1 cut(s)	78
BcoDI	GTCTC	2 cut(s)	587, 881
BfaI	CTAG	1 cut(s)	977
BfmI	CTRYAG	3 cut(s)	97, 453, 524
BfrI	CTTAAG	1 cut(s)	308
BfuAI	ACCTGC	1 cut(s)	915
BglI	GCCNNNNNGGC	1 cut(s)	612
BglII	AGATCT	3 cut(s)	871, 959, 1081
BisI	GCNGC	8 cut(s)	85, 100, 296, 327, 337, 662, 856, 981
BlsI	GCNGC	8 cut(s)	86, 101, 297, 328, 338, 663, 857, 982
Bme1390I	CCNGG	5 cut(s)	78, 531, 619, 677, 804
Bme18I	GGWCC	1 cut(s)	429
BmgT120I	GGNCC	2 cut(s)	429, 533
BmiI	GGNNCC	1 cut(s)	616
BmrFI	CCNGG	5 cut(s)	78, 531, 619, 677, 804
BmsI	GCATC	2 cut(s)	429, 959
BpiI	GAAGAC	3 cut(s)	522, 852, 1041
Bpu10I	CCTNAGC	1 cut(s)	551
BpuEI	CTTGAG	1 cut(s)	242
BpuMI	CCSGG	1 cut(s)	78
BsaBI	GATNNNNATC	2 cut(s)	192, 1053
BsaJI	CCNNGG	5 cut(s)	319, 475, 536, 802, 1008
Bsc4I	CCNNNNNNNGG	3 cut(s)	205, 438, 809
Bse1I	ACTGG	1 cut(s)	370
Bse21I	CCTNAGG	1 cut(s)	861
Bse3DI	GCAATG	1 cut(s)	36
Bse8I	GATNNNNATC	2 cut(s)	192, 1053
BseBI	CCWGG	4 cut(s)	531, 619, 677, 804
BseDI	CCNNGG	5 cut(s)	319, 475, 536, 802, 1008
BseGI	GGATG	2 cut(s)	193, 1129
BseJI	GATNNNNATC	2 cut(s)	192, 1053
BseLI	CCNNNNNNNGG	3 cut(s)	205, 438, 809
BseMI	GCAATG	1 cut(s)	36
BseMII	CTCAG	3 cut(s)	194, 266, 542
BseNI	ACTGG	1 cut(s)	370
BseRI	GAGGAG	5 cut(s)	20, 30, 188, 493, 845
BseSI	GKGCMC	1 cut(s)	617
BseXI	GCAGC	7 cut(s)	71, 111, 282, 313, 673, 842, 992
BsgI	GTGCAG	2 cut(s)	295, 828
Bsh1236I	CGCG	1 cut(s)	321
BshFI	GGCC	2 cut(s)	534, 1026
BshNI	GGYRCC	1 cut(s)	614
BsiSI	CCGG	1 cut(s)	78
BslFI	GGGAC	3 cut(s)	60, 395, 894
BslI	CCNNNNNNNGG	3 cut(s)	205, 438, 809
BsmAI	GTCTC	2 cut(s)	587, 881
BsmFI	GGGAC	3 cut(s)	60, 395, 894
BsnI	GGCC	2 cut(s)	534, 1026
Bsp1286I	GDGCHC	1 cut(s)	617
Bsp143I	GATC	4 cut(s)	871, 959, 1054, 1081
Bsp19I	CCATGG	2 cut(s)	475, 536
BspACI	CCGC	4 cut(s)	319, 321, 337, 442
BspANI	GGCC	2 cut(s)	534, 1026
BspCNI	CTCAG	3 cut(s)	193, 265, 543
BspFNI	CGCG	1 cut(s)	321
BspHI	TCATGA	1 cut(s)	631
BspLI	GGNNCC	1 cut(s)	616
BspMAI	CTGCAG	1 cut(s)	101
BspMI	ACCTGC	1 cut(s)	915
BspT107I	GGYRCC	1 cut(s)	614
BspTI	CTTAAG	1 cut(s)	308
BsrDI	GCAATG	1 cut(s)	36
BsrI	ACTGG	1 cut(s)	370
BssECI	CCNNGG	5 cut(s)	319, 475, 536, 802, 1008
BssMI	GATC	4 cut(s)	871, 959, 1054, 1081
BssT1I	CCWWGG	3 cut(s)	475, 536, 1008
Bst2UI	CCWGG	4 cut(s)	531, 619, 677, 804
Bst4CI	ACNGT	1 cut(s)	725
Bst6I	CTCTTC	2 cut(s)	36, 227
BstAFI	CTTAAG	1 cut(s)	308
BstDEI	CTNAG	4 cut(s)	180, 252, 551, 861
BstDSI	CCRYGG	3 cut(s)	319, 475, 536
BstEII	GGTNACC	1 cut(s)	621
BstF5I	GGATG	2 cut(s)	193, 1129
BstFNI	CGCG	1 cut(s)	321
BstKTI	GATC	4 cut(s)	874, 962, 1057, 1084
BstMAI	GTCTC	2 cut(s)	587, 881
BstMBI	GATC	4 cut(s)	871, 959, 1054, 1081
BstMWI	GCNNNNNNNGC	8 cut(s)	45, 90, 99, 108, 153, 248, 612, 977
BstNI	CCWGG	4 cut(s)	531, 619, 677, 804
BstPI	GGTNACC	1 cut(s)	621
BstSCI	CCNGG	5 cut(s)	76, 529, 617, 675, 802
BstSFI	CTRYAG	3 cut(s)	97, 453, 524
BstSLI	GKGCMC	1 cut(s)	617
BstUI	CGCG	1 cut(s)	321
BstV1I	GCAGC	7 cut(s)	71, 111, 282, 313, 673, 842, 992
BstV2I	GAAGAC	3 cut(s)	522, 852, 1041
BstX2I	RGATCY	3 cut(s)	871, 959, 1081
BstYI	RGATCY	3 cut(s)	871, 959, 1081
Bsu36I	CCTNAGG	1 cut(s)	861
BsuRI	GGCC	2 cut(s)	534, 1026
BtgI	CCRYGG	3 cut(s)	319, 475, 536
BtsCI	GGATG	2 cut(s)	193, 1129
BveI	ACCTGC	1 cut(s)	915
CciI	TCATGA	1 cut(s)	631
Cfr13I	GGNCC	2 cut(s)	429, 533
Cfr42I	CCGCGG	1 cut(s)	322
CsiI	ACCWGGT	1 cut(s)	617
Csp6I	GTAC	5 cut(s)	67, 132, 141, 170, 818
CviAII	CATG	7 cut(s)	426, 476, 493, 537, 632, 884, 1039
CviQI	GTAC	5 cut(s)	67, 132, 141, 170, 818
DdeI	CTNAG	4 cut(s)	180, 252, 551, 861
DpnI	GATC	4 cut(s)	873, 961, 1056, 1083
DpnII	GATC	4 cut(s)	871, 959, 1054, 1081
Eam1104I	CTCTTC	2 cut(s)	36, 227
EarI	CTCTTC	2 cut(s)	36, 227
Eco130I	CCWWGG	3 cut(s)	475, 536, 1008
Eco147I	AGGCCT	1 cut(s)	1026
Eco47I	GGWCC	1 cut(s)	429
Eco57I	CTGAAG	2 cut(s)	316, 876
Eco81I	CCTNAGG	1 cut(s)	861
Eco91I	GGTNACC	1 cut(s)	621
EcoO65I	GGTNACC	1 cut(s)	621
EcoRII	CCWGG	4 cut(s)	529, 617, 675, 802
EcoT14I	CCWWGG	3 cut(s)	475, 536, 1008
EcoT22I	ATGCAT	2 cut(s)	422, 952
ErhI	CCWWGG	3 cut(s)	475, 536, 1008
FaeI	CATG	7 cut(s)	429, 479, 496, 540, 635, 887, 1042
FaqI	GGGAC	3 cut(s)	60, 395, 894
FatI	CATG	7 cut(s)	425, 475, 492, 536, 631, 883, 1038
FbaI	TGATCA	1 cut(s)	1054
Fnu4HI	GCNGC	8 cut(s)	85, 100, 296, 327, 337, 662, 856, 981
FokI	GGATG	2 cut(s)	200, 1136
Fsp4HI	GCNGC	8 cut(s)	85, 100, 296, 327, 337, 662, 856, 981
FspBI	CTAG	1 cut(s)	977
GluI	GCNGC	8 cut(s)	85, 100, 296, 327, 337, 662, 856, 981
HaeIII	GGCC	2 cut(s)	534, 1026
HapII	CCGG	1 cut(s)	78
Hin1II	CATG	7 cut(s)	429, 479, 496, 540, 635, 887, 1042
HinfI	GANTC	5 cut(s)	59, 127, 245, 541, 1070
HpaII	CCGG	1 cut(s)	78
HphI	GGTGA	2 cut(s)	615, 1139
Hpy166II	GTNNAC	4 cut(s)	602, 766, 818, 995
Hpy188I	TCNGA	8 cut(s)	183, 208, 255, 393, 955, 1081, 1086, 1177
Hpy188III	TCNNGA	4 cut(s)	512, 632, 1103, 1115
Hpy8I	GTNNAC	4 cut(s)	602, 766, 818, 995
HpyAV	CCTTC	5 cut(s)	113, 340, 726, 1124, 1187
HpyCH4III	ACNGT	1 cut(s)	725
HpyCH4V	TGCA	7 cut(s)	48, 87, 99, 276, 420, 809, 950
HpyF10VI	GCNNNNNNNGC	8 cut(s)	45, 90, 99, 108, 153, 248, 612, 977
HpyF3I	CTNAG	4 cut(s)	180, 252, 551, 861
Hsp92II	CATG	7 cut(s)	429, 479, 496, 540, 635, 887, 1042
Ksp22I	TGATCA	1 cut(s)	1054
KspI	CCGCGG	1 cut(s)	322
Kzo9I	GATC	4 cut(s)	871, 959, 1054, 1081
LmnI	GCTCC	2 cut(s)	98, 1010
Lsp1109I	GCAGC	7 cut(s)	71, 111, 282, 313, 673, 842, 992
LweI	GCATC	2 cut(s)	429, 959
MabI	ACCWGGT	1 cut(s)	617
MaeI	CTAG	1 cut(s)	977
MaeIII	GTNAC	2 cut(s)	621, 751
MalI	GATC	4 cut(s)	873, 961, 1056, 1083
MboI	GATC	4 cut(s)	871, 959, 1054, 1081
MboII	GAAGA	8 cut(s)	53, 244, 424, 527, 704, 854, 857, 1046
MflI	RGATCY	3 cut(s)	871, 959, 1081
MhlI	GDGCHC	1 cut(s)	617
MluCI	AATT	6 cut(s)	468, 557, 654, 665, 784, 1095
MlyI	GAGTC	1 cut(s)	1064
MmeI	TCCRAC	1 cut(s)	939
Mph1103I	ATGCAT	2 cut(s)	422, 952
MseI	TTAA	6 cut(s)	114, 309, 644, 744, 1064, 1098
MslI	CAYNNNNRTG	1 cut(s)	786
MspA1I	CMGCKG	2 cut(s)	321, 855
MspCI	CTTAAG	1 cut(s)	308
MspI	CCGG	1 cut(s)	78
MspR9I	CCNGG	5 cut(s)	78, 531, 619, 677, 804
MvaI	CCWGG	4 cut(s)	531, 619, 677, 804
MvnI	CGCG	1 cut(s)	321
MwoI	GCNNNNNNNGC	8 cut(s)	45, 90, 99, 108, 153, 248, 612, 977
NciI	CCSGG	1 cut(s)	78
NcoI	CCATGG	2 cut(s)	475, 536
NdeII	GATC	4 cut(s)	871, 959, 1054, 1081
NlaIII	CATG	7 cut(s)	429, 479, 496, 540, 635, 887, 1042
NlaIV	GGNNCC	1 cut(s)	616
NmuCI	GTSAC	2 cut(s)	621, 751
NsiI	ATGCAT	2 cut(s)	422, 952
PagI	TCATGA	1 cut(s)	631
PaqCI	CACCTGC	1 cut(s)	915
PceI	AGGCCT	1 cut(s)	1026
PfeI	GAWTC	4 cut(s)	59, 127, 245, 541
PflMI	CCANNNNNTGG	1 cut(s)	438
PkrI	GCNGC	8 cut(s)	86, 101, 297, 328, 338, 663, 857, 982
PleI	GAGTC	1 cut(s)	1064
PpsI	GAGTC	1 cut(s)	1064
PshBI	ATTAAT	1 cut(s)	1098
Psp6I	CCWGG	4 cut(s)	529, 617, 675, 802
PspEI	GGTNACC	1 cut(s)	621
PspGI	CCWGG	4 cut(s)	529, 617, 675, 802
PspN4I	GGNNCC	1 cut(s)	616
PspPI	GGNCC	2 cut(s)	429, 533
PstI	CTGCAG	1 cut(s)	101
PsuI	RGATCY	3 cut(s)	871, 959, 1081
PvuII	CAGCTG	1 cut(s)	855
RsaI	GTAC	5 cut(s)	68, 133, 142, 171, 819
RsaNI	GTAC	5 cut(s)	67, 132, 141, 170, 818
RseI	CAYNNNNRTG	1 cut(s)	786
SacII	CCGCGG	1 cut(s)	322
SaqAI	TTAA	6 cut(s)	114, 309, 644, 744, 1064, 1098
SatI	GCNGC	8 cut(s)	85, 100, 296, 327, 337, 662, 856, 981
Sau3AI	GATC	4 cut(s)	871, 959, 1054, 1081
Sau96I	GGNCC	2 cut(s)	429, 533
SchI	GAGTC	1 cut(s)	1064
ScrFI	CCNGG	5 cut(s)	78, 531, 619, 677, 804
SduI	GDGCHC	1 cut(s)	617
SexAI	ACCWGGT	1 cut(s)	617
SfaNI	GCATC	2 cut(s)	429, 959
SfcI	CTRYAG	3 cut(s)	97, 453, 524
Sfr303I	CCGCGG	1 cut(s)	322
SgrBI	CCGCGG	1 cut(s)	322
SinI	GGWCC	1 cut(s)	429
SmiMI	CAYNNNNRTG	1 cut(s)	786
SmlI	CTYRAG	2 cut(s)	221, 308
SmoI	CTYRAG	2 cut(s)	221, 308
Sse9I	AATT	6 cut(s)	468, 557, 654, 665, 784, 1095
SseBI	AGGCCT	1 cut(s)	1026
SsiI	CCGC	4 cut(s)	319, 321, 337, 442
SspI	AATATT	1 cut(s)	1203
SspMI	CTAG	1 cut(s)	977
StuI	AGGCCT	1 cut(s)	1026
StyD4I	CCNGG	5 cut(s)	76, 529, 617, 675, 802
StyI	CCWWGG	3 cut(s)	475, 536, 1008
TaaI	ACNGT	1 cut(s)	725
TasI	AATT	6 cut(s)	468, 557, 654, 665, 784, 1095
TatI	WGTACW	1 cut(s)	66
TauI	GCSGC	1 cut(s)	339
TfiI	GAWTC	4 cut(s)	59, 127, 245, 541
Tru1I	TTAA	6 cut(s)	114, 309, 644, 744, 1064, 1098
Tru9I	TTAA	6 cut(s)	114, 309, 644, 744, 1064, 1098
TseFI	GTSAC	2 cut(s)	621, 751
TseI	GCWGC	7 cut(s)	84, 99, 295, 326, 661, 855, 980
Tsp45I	GTSAC	2 cut(s)	621, 751
TspDTI	ATGAA	5 cut(s)	437, 501, 509, 620, 770
TspGWI	ACGGA	1 cut(s)	27
Van91I	CCANNNNNTGG	1 cut(s)	438
Vha464I	CTTAAG	1 cut(s)	308
VpaK11BI	GGWCC	1 cut(s)	429
VspI	ATTAAT	1 cut(s)	1098
XcmI	CCANNNNNNNNNTGG	2 cut(s)	181, 527
XspI	CTAG	1 cut(s)	977
Zsp2I	ATGCAT	2 cut(s)	422, 952

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.