RchiOBHm_Chr7g0230361

Box C D snoRNA protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
7
OG0006202
Physical Location & Seq
Forward (+)
53864102 .. 53866733
2632 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ20640

Sequence Viewer

Length: 1221 bp
ATGGAGGACGGAGGAGAGGCAAAGACAAAGGCAAAGGCAATGTTATGCGAAGAGTGCAAAGCCAAAGAATCCAAGTACAAATGTCCCGGTTGCTCCATACGCTCCTGCAGCCTTCCCTGCGTTAAAGGCCACAAGATTCGTACCTCTTGTACGGGCAAGAGAAGCCAAACCCACTTCGTACCCATCTCTCAGATGGATGATAATCTCCTCCTTTCGGACTACAATCTGCTTGAGGAAGTGAAGAGGGTTGCTGATTCTGCTCAGAGATTGAGGAATAAGTTGTGCAGATACAATAGTTTTAGGCTGCCTTTTTATCTTAAGAGCCTCCGCGGTGCTGCTTTCAGCCGCAGAACTAAACTCTTGTTTTTGCCTACTGGTATGTCAAAGAGGGACAAAAATCAGACCCGATACGACACAAGGAAGAAATGCATCACATGGACCATTGAGTGGCGGTTTCATTCTACAGATGTAGTTCTAATTGACCATGGAGTAAATGAAAACAGGAACCTCTCCTCTGTTCTTGAAGACCATCTACAGCCTGGCCCATGGAATCATAAGCTGAGGCAATTCTGTATAGAGCAGCTGGATTGTCTCAAACTTTTTATTCGTAAACGCCCAAAGGGCACCAGGTCACCCTTTCGTGAGTTAGATTTAAGAGTTCCAATCAGGCAGCAATTAGCCAACCTGGATATTTTGGAATACCCTGTCATCTATGTTTTTCTTCCTTCACACAGTATTGATTTTGAAGTCGTTAAAGATGTCACTCGTAATGTTCACAAACAAGAGCTTCAGAATTATGGAAGTAATGACCCAGGTGCAGGAGGTGTACCCTTTAGGGAGGAGGAAATAGAAGAGGACAACAGCTGCCCTAAGGTGTTAGATCTAAAGGGACATGAGACTTCAGTTTCCCTGCCTCATATTTCCAACAACAGCAGGTGTGAGAAAGGGATAAATAATTCATCAGATAGATCTTTGTCTGCAACACTAGCAGCAGAAAATGGTTCACATTCCAGCTCCAAGGATAAGGAACAAGGCCTTTTTGAAGACATGGAGTTTGATTTTGATCAAGGCTTAATAGACTCGTATTCAGATCTTATTGCTGAAATTAATCCTGATGATTTTCTTGATTTGGATGGTGAAGGGATAGAAAGAAATCTTTCTGGTATCAGGGATTTCTTATTATCAGATGATGATATAGAGGAAGGGGAAATATTAGAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
TIC20 zf-HIT

Protein Analysis

406

Amino Acids

46.37

Weight (kDa)

5.86

Isoelectric Point (pI)

57.06

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-HIT PF04438 14 - 42 2.8e-08 HIT zinc finger
BCD1 PF25790 107 - 250 4e-50 BCD1 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 924
Acc36I ACCTGC 1 cut(s) 924
AccB1I GGYRCC 1 cut(s) 623
AccB7I CCANNNNNTGG 1 cut(s) 447
AccII CGCG 1 cut(s) 330
AciI CCGC 4 cut(s) 328, 330, 346, 451
AcuI CTGAAG 2 cut(s) 773, 885
AfaI GTAC 5 cut(s) 77, 142, 151, 180, 828
AfiI CCNNNNNNNGG 3 cut(s) 214, 447, 818
AflII CTTAAG 1 cut(s) 317
AgsI TTSAA 3 cut(s) 524, 746, 1043
AjnI CCWGG 4 cut(s) 538, 626, 684, 811
AluBI AGCT 5 cut(s) 559, 583, 787, 864, 1014
AluI AGCT 5 cut(s) 559, 583, 787, 864, 1014
Alw26I GTCTC 2 cut(s) 596, 890
AoxI GGCC 3 cut(s) 127, 541, 1033
ApeKI GCWGC 7 cut(s) 108, 304, 335, 580, 670, 864, 989
ArsI GACNNNNNNTTYG 2 cut(s) 1037, 1069
AseI ATTAAT 1 cut(s) 1107
Asp700I GAANNNNTTC 1 cut(s) 1156
AspS9I GGNCC 2 cut(s) 438, 542
AsuC2I CCSGG 1 cut(s) 87
AsuHPI GGTGA 2 cut(s) 624, 1148
AvaII GGWCC 1 cut(s) 438
AxyI CCTNAGG 1 cut(s) 870
BaeGI GKGCMC 1 cut(s) 626
BaeI ACNNNNGTAYC 2 cut(s) 280, 313
BanI GGYRCC 1 cut(s) 623
BarI GAAGNNNNNNTAC 2 cut(s) 516, 548
BbsI GAAGAC 2 cut(s) 531, 1050
BbvCI CCTCAGC 1 cut(s) 560
BbvI GCAGC 7 cut(s) 120, 291, 322, 592, 682, 851, 1001
BccI CCATC 4 cut(s) 187, 191, 537, 1127
BciT130I CCWGG 4 cut(s) 540, 628, 686, 813
BclI TGATCA 1 cut(s) 1063
BcnI CCSGG 1 cut(s) 87
BcoDI GTCTC 2 cut(s) 596, 890
BfaI CTAG 1 cut(s) 986
BfmI CTRYAG 3 cut(s) 106, 462, 533
BfrI CTTAAG 1 cut(s) 317
BfuAI ACCTGC 1 cut(s) 924
BglI GCCNNNNNGGC 1 cut(s) 621
BglII AGATCT 3 cut(s) 880, 968, 1090
BisI GCNGC 8 cut(s) 109, 305, 336, 346, 581, 671, 865, 990
BlsI GCNGC 8 cut(s) 110, 306, 337, 347, 582, 672, 866, 991
Bme1390I CCNGG 5 cut(s) 87, 540, 628, 686, 813
Bme18I GGWCC 1 cut(s) 438
BmgT120I GGNCC 2 cut(s) 438, 542
BmiI GGNNCC 2 cut(s) 506, 625
BmrFI CCNGG 5 cut(s) 87, 540, 628, 686, 813
BmsI GCATC 1 cut(s) 438
BpiI GAAGAC 2 cut(s) 531, 1050
Bpu10I CCTNAGC 1 cut(s) 560
BpuEI CTTGAG 1 cut(s) 251
BpuMI CCSGG 1 cut(s) 87
BsaBI GATNNNNATC 2 cut(s) 201, 1062
BsaJI CCNNGG 5 cut(s) 328, 484, 545, 811, 1017
Bsc4I CCNNNNNNNGG 3 cut(s) 214, 447, 818
Bse1I ACTGG 1 cut(s) 379
Bse21I CCTNAGG 1 cut(s) 870
Bse3DI GCAATG 1 cut(s) 45
Bse8I GATNNNNATC 2 cut(s) 201, 1062
BseBI CCWGG 4 cut(s) 540, 628, 686, 813
BseDI CCNNGG 5 cut(s) 328, 484, 545, 811, 1017
BseGI GGATG 2 cut(s) 202, 1138
BseJI GATNNNNATC 2 cut(s) 201, 1062
BseLI CCNNNNNNNGG 3 cut(s) 214, 447, 818
BseMI GCAATG 1 cut(s) 45
BseMII CTCAG 3 cut(s) 203, 275, 551
BseNI ACTGG 1 cut(s) 379
BseRI GAGGAG 4 cut(s) 27, 197, 502, 854
BseSI GKGCMC 1 cut(s) 626
BseXI GCAGC 7 cut(s) 120, 291, 322, 592, 682, 851, 1001
BsgI GTGCAG 2 cut(s) 304, 837
Bsh1236I CGCG 1 cut(s) 330
BshFI GGCC 3 cut(s) 129, 543, 1035
BshNI GGYRCC 1 cut(s) 623
BsiSI CCGG 1 cut(s) 87
BslFI GGGAC 3 cut(s) 69, 404, 903
BslI CCNNNNNNNGG 3 cut(s) 214, 447, 818
BsmAI GTCTC 2 cut(s) 596, 890
BsmFI GGGAC 3 cut(s) 69, 404, 903
BsnI GGCC 3 cut(s) 129, 543, 1035
Bsp1286I GDGCHC 1 cut(s) 626
Bsp143I GATC 4 cut(s) 880, 968, 1063, 1090
Bsp19I CCATGG 2 cut(s) 484, 545
BspACI CCGC 4 cut(s) 328, 330, 346, 451
BspANI GGCC 3 cut(s) 129, 543, 1035
BspCNI CTCAG 3 cut(s) 202, 274, 552
BspFNI CGCG 1 cut(s) 330
BspLI GGNNCC 2 cut(s) 506, 625
BspMAI CTGCAG 1 cut(s) 110
BspMI ACCTGC 1 cut(s) 924
BspT107I GGYRCC 1 cut(s) 623
BspTI CTTAAG 1 cut(s) 317
BsrDI GCAATG 1 cut(s) 45
BsrI ACTGG 1 cut(s) 379
BssECI CCNNGG 5 cut(s) 328, 484, 545, 811, 1017
BssMI GATC 4 cut(s) 880, 968, 1063, 1090
BssT1I CCWWGG 3 cut(s) 484, 545, 1017
Bst2UI CCWGG 4 cut(s) 540, 628, 686, 813
Bst4CI ACNGT 1 cut(s) 734
Bst6I CTCTTC 3 cut(s) 45, 236, 846
BstAFI CTTAAG 1 cut(s) 317
BstDEI CTNAG 4 cut(s) 189, 261, 560, 870
BstDSI CCRYGG 3 cut(s) 328, 484, 545
BstEII GGTNACC 1 cut(s) 630
BstF5I GGATG 2 cut(s) 202, 1138
BstFNI CGCG 1 cut(s) 330
BstKTI GATC 4 cut(s) 883, 971, 1066, 1093
BstMAI GTCTC 2 cut(s) 596, 890
BstMBI GATC 4 cut(s) 880, 968, 1063, 1090
BstMWI GCNNNNNNNGC 9 cut(s) 54, 99, 108, 117, 126, 162, 257, 621, 986
BstNI CCWGG 4 cut(s) 540, 628, 686, 813
BstPI GGTNACC 1 cut(s) 630
BstSCI CCNGG 5 cut(s) 85, 538, 626, 684, 811
BstSFI CTRYAG 3 cut(s) 106, 462, 533
BstSLI GKGCMC 1 cut(s) 626
BstUI CGCG 1 cut(s) 330
BstV1I GCAGC 7 cut(s) 120, 291, 322, 592, 682, 851, 1001
BstV2I GAAGAC 2 cut(s) 531, 1050
BstX2I RGATCY 3 cut(s) 880, 968, 1090
BstYI RGATCY 3 cut(s) 880, 968, 1090
Bsu36I CCTNAGG 1 cut(s) 870
BsuRI GGCC 3 cut(s) 129, 543, 1035
BtgI CCRYGG 3 cut(s) 328, 484, 545
BtsCI GGATG 2 cut(s) 202, 1138
BveI ACCTGC 1 cut(s) 924
Cfr13I GGNCC 2 cut(s) 438, 542
Cfr42I CCGCGG 1 cut(s) 331
CsiI ACCWGGT 1 cut(s) 626
Csp6I GTAC 5 cut(s) 76, 141, 150, 179, 827
CviAII CATG 5 cut(s) 435, 485, 546, 893, 1048
CviQI GTAC 5 cut(s) 76, 141, 150, 179, 827
DdeI CTNAG 4 cut(s) 189, 261, 560, 870
DpnI GATC 4 cut(s) 882, 970, 1065, 1092
DpnII GATC 4 cut(s) 880, 968, 1063, 1090
Eam1104I CTCTTC 3 cut(s) 45, 236, 846
EarI CTCTTC 3 cut(s) 45, 236, 846
Eco130I CCWWGG 3 cut(s) 484, 545, 1017
Eco147I AGGCCT 1 cut(s) 1035
Eco47I GGWCC 1 cut(s) 438
Eco57I CTGAAG 2 cut(s) 773, 885
Eco81I CCTNAGG 1 cut(s) 870
Eco91I GGTNACC 1 cut(s) 630
EcoO65I GGTNACC 1 cut(s) 630
EcoRII CCWGG 4 cut(s) 538, 626, 684, 811
EcoT14I CCWWGG 3 cut(s) 484, 545, 1017
EcoT22I ATGCAT 1 cut(s) 431
ErhI CCWWGG 3 cut(s) 484, 545, 1017
FaeI CATG 5 cut(s) 438, 488, 549, 896, 1051
FaqI GGGAC 3 cut(s) 69, 404, 903
FatI CATG 5 cut(s) 434, 484, 545, 892, 1047
FbaI TGATCA 1 cut(s) 1063
Fnu4HI GCNGC 8 cut(s) 109, 305, 336, 346, 581, 671, 865, 990
FokI GGATG 2 cut(s) 209, 1145
Fsp4HI GCNGC 8 cut(s) 109, 305, 336, 346, 581, 671, 865, 990
FspBI CTAG 1 cut(s) 986
GluI GCNGC 8 cut(s) 109, 305, 336, 346, 581, 671, 865, 990
HaeIII GGCC 3 cut(s) 129, 543, 1035
HapII CCGG 1 cut(s) 87
Hin1II CATG 5 cut(s) 438, 488, 549, 896, 1051
HinfI GANTC 5 cut(s) 68, 136, 254, 550, 1079
HpaII CCGG 1 cut(s) 87
HphI GGTGA 2 cut(s) 624, 1148
Hpy166II GTNNAC 4 cut(s) 611, 775, 827, 1004
Hpy188I TCNGA 8 cut(s) 192, 217, 264, 402, 792, 964, 1090, 1186
Hpy188III TCNNGA 4 cut(s) 521, 641, 1112, 1124
Hpy8I GTNNAC 4 cut(s) 611, 775, 827, 1004
HpyAV CCTTC 4 cut(s) 122, 735, 1133, 1196
HpyCH4III ACNGT 1 cut(s) 734
HpyCH4V TGCA 6 cut(s) 57, 108, 285, 429, 818, 980
HpyF10VI GCNNNNNNNGC 9 cut(s) 54, 99, 108, 117, 126, 162, 257, 621, 986
HpyF3I CTNAG 4 cut(s) 189, 261, 560, 870
Hsp92II CATG 5 cut(s) 438, 488, 549, 896, 1051
Ksp22I TGATCA 1 cut(s) 1063
KspI CCGCGG 1 cut(s) 331
Kzo9I GATC 4 cut(s) 880, 968, 1063, 1090
LmnI GCTCC 3 cut(s) 98, 107, 1019
Lsp1109I GCAGC 7 cut(s) 120, 291, 322, 592, 682, 851, 1001
LweI GCATC 1 cut(s) 438
MabI ACCWGGT 1 cut(s) 626
MaeI CTAG 1 cut(s) 986
MaeIII GTNAC 2 cut(s) 630, 760
MalI GATC 4 cut(s) 882, 970, 1065, 1092
MboI GATC 4 cut(s) 880, 968, 1063, 1090
MboII GAAGA 7 cut(s) 62, 253, 433, 536, 713, 863, 1055
MflI RGATCY 3 cut(s) 880, 968, 1090
MhlI GDGCHC 1 cut(s) 626
MluCI AATT 6 cut(s) 477, 566, 674, 793, 955, 1104
MlyI GAGTC 1 cut(s) 1073
MmeI TCCRAC 1 cut(s) 948
Mph1103I ATGCAT 1 cut(s) 431
MroXI GAANNNNTTC 1 cut(s) 1156
MseI TTAA 6 cut(s) 123, 318, 653, 753, 1073, 1107
MspA1I CMGCKG 3 cut(s) 330, 583, 864
MspCI CTTAAG 1 cut(s) 317
MspI CCGG 1 cut(s) 87
MspR9I CCNGG 5 cut(s) 87, 540, 628, 686, 813
MvaI CCWGG 4 cut(s) 540, 628, 686, 813
MvnI CGCG 1 cut(s) 330
MwoI GCNNNNNNNGC 9 cut(s) 54, 99, 108, 117, 126, 162, 257, 621, 986
NciI CCSGG 1 cut(s) 87
NcoI CCATGG 2 cut(s) 484, 545
NdeII GATC 4 cut(s) 880, 968, 1063, 1090
NlaIII CATG 5 cut(s) 438, 488, 549, 896, 1051
NlaIV GGNNCC 2 cut(s) 506, 625
NmuCI GTSAC 2 cut(s) 630, 760
NsiI ATGCAT 1 cut(s) 431
PaqCI CACCTGC 1 cut(s) 924
PceI AGGCCT 1 cut(s) 1035
PdmI GAANNNNTTC 1 cut(s) 1156
PfeI GAWTC 4 cut(s) 68, 136, 254, 550
PflMI CCANNNNNTGG 1 cut(s) 447
PkrI GCNGC 8 cut(s) 110, 306, 337, 347, 582, 672, 866, 991
PleI GAGTC 1 cut(s) 1073
PpsI GAGTC 1 cut(s) 1073
PshBI ATTAAT 1 cut(s) 1107
Psp6I CCWGG 4 cut(s) 538, 626, 684, 811
PspEI GGTNACC 1 cut(s) 630
PspGI CCWGG 4 cut(s) 538, 626, 684, 811
PspN4I GGNNCC 2 cut(s) 506, 625
PspPI GGNCC 2 cut(s) 438, 542
PstI CTGCAG 1 cut(s) 110
PsuI RGATCY 3 cut(s) 880, 968, 1090
PvuII CAGCTG 2 cut(s) 583, 864
RsaI GTAC 5 cut(s) 77, 142, 151, 180, 828
RsaNI GTAC 5 cut(s) 76, 141, 150, 179, 827
SacII CCGCGG 1 cut(s) 331
SaqAI TTAA 6 cut(s) 123, 318, 653, 753, 1073, 1107
SatI GCNGC 8 cut(s) 109, 305, 336, 346, 581, 671, 865, 990
Sau3AI GATC 4 cut(s) 880, 968, 1063, 1090
Sau96I GGNCC 2 cut(s) 438, 542
SchI GAGTC 1 cut(s) 1073
ScrFI CCNGG 5 cut(s) 87, 540, 628, 686, 813
SduI GDGCHC 1 cut(s) 626
SexAI ACCWGGT 1 cut(s) 626
SfaNI GCATC 1 cut(s) 438
SfcI CTRYAG 3 cut(s) 106, 462, 533
Sfr303I CCGCGG 1 cut(s) 331
SgrBI CCGCGG 1 cut(s) 331
SinI GGWCC 1 cut(s) 438
SmlI CTYRAG 2 cut(s) 230, 317
SmoI CTYRAG 2 cut(s) 230, 317
Sse9I AATT 6 cut(s) 477, 566, 674, 793, 955, 1104
SseBI AGGCCT 1 cut(s) 1035
SsiI CCGC 4 cut(s) 328, 330, 346, 451
SspI AATATT 1 cut(s) 1212
SspMI CTAG 1 cut(s) 986
StuI AGGCCT 1 cut(s) 1035
StyD4I CCNGG 5 cut(s) 85, 538, 626, 684, 811
StyI CCWWGG 3 cut(s) 484, 545, 1017
TaaI ACNGT 1 cut(s) 734
TasI AATT 6 cut(s) 477, 566, 674, 793, 955, 1104
TatI WGTACW 1 cut(s) 75
TauI GCSGC 1 cut(s) 348
TfiI GAWTC 4 cut(s) 68, 136, 254, 550
Tru1I TTAA 6 cut(s) 123, 318, 653, 753, 1073, 1107
Tru9I TTAA 6 cut(s) 123, 318, 653, 753, 1073, 1107
TseFI GTSAC 2 cut(s) 630, 760
TseI GCWGC 7 cut(s) 108, 304, 335, 580, 670, 864, 989
Tsp45I GTSAC 2 cut(s) 630, 760
TspDTI ATGAA 3 cut(s) 446, 510, 948
TspGWI ACGGA 1 cut(s) 24
Van91I CCANNNNNTGG 1 cut(s) 447
Vha464I CTTAAG 1 cut(s) 317
VpaK11BI GGWCC 1 cut(s) 438
VspI ATTAAT 1 cut(s) 1107
XcmI CCANNNNNNNNNTGG 2 cut(s) 190, 536
XmnI GAANNNNTTC 1 cut(s) 1156
XspI CTAG 1 cut(s) 986
Zsp2I ATGCAT 1 cut(s) 431
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.