Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7D

Orthogroup ID

OG0006202

Physical Location & Seq

Genomic Coordinates Forward (+)

57173596 .. 57176453

Gene Structure 2858 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7DG407600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1230 bp

ATGGAGGAGGACGGAGGAGAGGCAAAGACAAAGGCAAAGGCAAAGGCAATGTTATGCGAAGAGTGCAAAGCCAAAGAATCCAAGTACAAATGTCCCGGTTGCTCCATACGCTCCTGCAGCCTTCCCTGCGTTAAAGCCCACAAGATTCGTACATCTTGTACGGGCAAGAGAAGCCAAACCCACTTCGTACCCATCTCTCAGATGGATGATAATCTCCTCCTTTCGGACTACAATCTGCTTGAGGAAGTGAAGAGGGTTGCTGATTCTGCCCAGAGATTGAGGAATAAGTTGTGCAGATACAATAGTTTTAGGCTGCCTTTTTATCTTAAGAGCCTCCGCGGTGCTGCTTTCAGTCGCAGAACTAAACTCTTGTTTTTGCCTACTGGTATGTCAAAGAGGGACAAAAATCAGACCCGATACGACACAAGGAAGAAATGCATCACGTGGACAATTGAGTGGCGGTTTCATTCTACAGATGTAGTTCTAACTGACCATGGAGTAAATGAAAACATGAACCTCTCCTCTGTTCTTGAAGACCATCTACAGCCTGGCCCATGGAATCATCAGCTGAGGCAATTCTGTATAGAGCAGCTGGATTCTCTCAGACTTTTTATTCGTAAACGCCCAAAGGGCACCAGGTCCCCTTTCCGTGAGCTAGATTTAAGAGTTCCAATCAGGCAGCAGTTAGCCAACCTGGATATTTTGGAATATCCTGTCATATATGTTTTTCTTCCTTCACACCGTATTGATTTTGAAGTAGTTAAAGATGTCACACGTAATGTTCAGAAACAAGAGCTTCAAAATTATGGAAGTAATGACCCAAGTGCAGAAGGTGTACCCTTTAAGGAGGAGGAAATAGAAGAGGACAACAGCTGCCCTAAGGTGTTAGATCTAAAGGGACATGAGACTTCAGTTTCCCTGCCTCATATTTCCAACGACAGCAGGTGTGACAAAGGGATAAGTAATGCATCAGATAGATCTTTGTCTGCAACACTAGCAGCAGAAAATGGTTCACATTCCAGCTCCAAGGATAAGGAACAAGGCCTTTTTGAAGACATGGAGTTTGATTTTGATCAAGGCTTAATAGACTCGTATTCAGATCTTATTGCTGAAATTAATCCTGATGATTTTCTTGATTTGGATGGTGAAGGGATAGAAAGAAATCTTTCAGGTATCAGGGATTTCTTATTGTCAGATGATGATATAGAGGAAGGGGAAATATTAGAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TIC20 zf-HIT

Protein Analysis

409

Amino Acids

46.76

Weight (kDa)

5.55

Isoelectric Point (pI)

57.42

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-HIT	PF04438	17 - 45	2.8e-08	HIT zinc finger
BCD1	PF25790	110 - 253	4.3e-50	BCD1 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006202)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G04945 AT1G04945 AT1G04945 AT1G04945
fragaria_vesca	FvH4_5g32720
malus_domestica	MD02G1318000.v1.1 MD07G1003300.v1.1
prunus_persica	Prupe.2G005000_v2.0.a1 Prupe.2G005000_v2.0.a1 Prupe.2G005000_v2.0.a1 Prupe.2G005000_v2.0.a1 Prupe.2G005000_v2.0.a1 Prupe.2G005000_v2.0.a1
pyrus_communis	pycom02g26620 pycom07g00330
rosa_chinensis	RchiOBHm_Chr7g0230361
rosa_laevigata	RLG00000001498
rosa_multiflora	Rmu_sc0002541.1_g000034 Rmu_sc0007103.1_g000018
rosa_roxburghii	Rroxscaffold_3G00230200
rosa_rugosa	Rorug07G0260200
rosa_samantha	Rh7AG409600 Rh7AG411300 Rh7BG389400 Rh7CG429000 Rh7DG407600
rosa_wichuraiana	Rw7G034210

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	933
Acc36I	ACCTGC	1 cut(s)	933
AccB1I	GGYRCC	1 cut(s)	632
AccII	CGCG	1 cut(s)	339
AciI	CCGC	3 cut(s)	337, 339, 460
AcuI	CTGAAG	1 cut(s)	894
AcvI	CACGTG	1 cut(s)	444
AfaI	GTAC	5 cut(s)	86, 151, 160, 189, 837
AfiI	CCNNNNNNNGG	1 cut(s)	223
AflII	CTTAAG	1 cut(s)	326
AflIII	ACRYGT	1 cut(s)	773
AgsI	TTSAA	4 cut(s)	533, 755, 800, 1052
AjnI	CCWGG	3 cut(s)	547, 635, 693
AluBI	AGCT	6 cut(s)	568, 592, 655, 796, 873, 1023
AluI	AGCT	6 cut(s)	568, 592, 655, 796, 873, 1023
Alw26I	GTCTC	1 cut(s)	899
AoxI	GGCC	2 cut(s)	550, 1042
ApeKI	GCWGC	7 cut(s)	117, 313, 344, 589, 679, 873, 998
ArsI	GACNNNNNNTTYG	4 cut(s)	597, 629, 1046, 1078
AseI	ATTAAT	1 cut(s)	1116
Asp700I	GAANNNNTTC	1 cut(s)	1165
AspS9I	GGNCC	2 cut(s)	551, 639
AsuC2I	CCSGG	1 cut(s)	96
AsuHPI	GGTGA	1 cut(s)	1157
AvaII	GGWCC	1 cut(s)	639
AxyI	CCTNAGG	1 cut(s)	879
BaeGI	GKGCMC	1 cut(s)	635
BaeI	ACNNNNGTAYC	2 cut(s)	289, 322
BanI	GGYRCC	1 cut(s)	632
BarI	GAAGNNNNNNTAC	2 cut(s)	525, 557
BbrPI	CACGTG	1 cut(s)	444
BbsI	GAAGAC	2 cut(s)	540, 1059
BbvCI	CCTCAGC	1 cut(s)	569
BbvI	GCAGC	7 cut(s)	129, 300, 331, 601, 691, 860, 1010
BccI	CCATC	4 cut(s)	196, 200, 546, 1136
BciT130I	CCWGG	3 cut(s)	549, 637, 695
BclI	TGATCA	1 cut(s)	1072
BcnI	CCSGG	1 cut(s)	96
BcoDI	GTCTC	1 cut(s)	899
BfaI	CTAG	2 cut(s)	656, 995
BfmI	CTRYAG	3 cut(s)	115, 471, 542
BfrI	CTTAAG	1 cut(s)	326
BfuAI	ACCTGC	1 cut(s)	933
BglI	GCCNNNNNGGC	1 cut(s)	630
BglII	AGATCT	3 cut(s)	889, 977, 1099
BisI	GCNGC	7 cut(s)	118, 314, 345, 590, 680, 874, 999
BlsI	GCNGC	7 cut(s)	119, 315, 346, 591, 681, 875, 1000
Bme1390I	CCNGG	4 cut(s)	96, 549, 637, 695
Bme18I	GGWCC	1 cut(s)	639
BmgT120I	GGNCC	2 cut(s)	551, 639
BmiI	GGNNCC	2 cut(s)	634, 641
BmrFI	CCNGG	4 cut(s)	96, 549, 637, 695
BmsI	GCATC	2 cut(s)	447, 977
BpiI	GAAGAC	2 cut(s)	540, 1059
Bpu10I	CCTNAGC	1 cut(s)	569
BpuEI	CTTGAG	1 cut(s)	260
BpuMI	CCSGG	1 cut(s)	96
BsaAI	YACGTR	2 cut(s)	444, 776
BsaBI	GATNNNNATC	2 cut(s)	210, 1071
BsaJI	CCNNGG	4 cut(s)	337, 493, 554, 1026
Bsc4I	CCNNNNNNNGG	1 cut(s)	223
Bse1I	ACTGG	1 cut(s)	388
Bse21I	CCTNAGG	1 cut(s)	879
Bse3DI	GCAATG	1 cut(s)	54
Bse8I	GATNNNNATC	2 cut(s)	210, 1071
BseBI	CCWGG	3 cut(s)	549, 637, 695
BseDI	CCNNGG	4 cut(s)	337, 493, 554, 1026
BseGI	GGATG	2 cut(s)	211, 1147
BseJI	GATNNNNATC	2 cut(s)	210, 1071
BseLI	CCNNNNNNNGG	1 cut(s)	223
BseMI	GCAATG	1 cut(s)	54
BseMII	CTCAG	3 cut(s)	212, 560, 616
BseNI	ACTGG	1 cut(s)	388
BseRI	GAGGAG	5 cut(s)	20, 30, 206, 511, 863
BseSI	GKGCMC	1 cut(s)	635
BseXI	GCAGC	7 cut(s)	129, 300, 331, 601, 691, 860, 1010
BsgI	GTGCAG	2 cut(s)	313, 846
Bsh1236I	CGCG	1 cut(s)	339
BshFI	GGCC	2 cut(s)	552, 1044
BshNI	GGYRCC	1 cut(s)	632
BsiSI	CCGG	1 cut(s)	96
BslFI	GGGAC	4 cut(s)	78, 413, 625, 912
BslI	CCNNNNNNNGG	1 cut(s)	223
BsmAI	GTCTC	1 cut(s)	899
BsmFI	GGGAC	4 cut(s)	78, 413, 625, 912
BsnI	GGCC	2 cut(s)	552, 1044
Bsp1286I	GDGCHC	1 cut(s)	635
Bsp143I	GATC	4 cut(s)	889, 977, 1072, 1099
Bsp19I	CCATGG	2 cut(s)	493, 554
BspACI	CCGC	3 cut(s)	337, 339, 460
BspANI	GGCC	2 cut(s)	552, 1044
BspCNI	CTCAG	3 cut(s)	211, 561, 615
BspFNI	CGCG	1 cut(s)	339
BspLI	GGNNCC	2 cut(s)	634, 641
BspMAI	CTGCAG	1 cut(s)	119
BspMI	ACCTGC	1 cut(s)	933
BspT107I	GGYRCC	1 cut(s)	632
BspTI	CTTAAG	1 cut(s)	326
BsrDI	GCAATG	1 cut(s)	54
BsrI	ACTGG	1 cut(s)	388
BssECI	CCNNGG	4 cut(s)	337, 493, 554, 1026
BssMI	GATC	4 cut(s)	889, 977, 1072, 1099
BssT1I	CCWWGG	3 cut(s)	493, 554, 1026
Bst2UI	CCWGG	3 cut(s)	549, 637, 695
Bst4CI	ACNGT	1 cut(s)	743
Bst6I	CTCTTC	3 cut(s)	54, 245, 855
BstAFI	CTTAAG	1 cut(s)	326
BstBAI	YACGTR	2 cut(s)	444, 776
BstDEI	CTNAG	4 cut(s)	198, 569, 602, 879
BstDSI	CCRYGG	3 cut(s)	337, 493, 554
BstF5I	GGATG	2 cut(s)	211, 1147
BstFNI	CGCG	1 cut(s)	339
BstKTI	GATC	4 cut(s)	892, 980, 1075, 1102
BstMAI	GTCTC	1 cut(s)	899
BstMBI	GATC	4 cut(s)	889, 977, 1072, 1099
BstMWI	GCNNNNNNNGC	8 cut(s)	63, 108, 117, 126, 171, 266, 630, 995
BstNI	CCWGG	3 cut(s)	549, 637, 695
BstSCI	CCNGG	4 cut(s)	94, 547, 635, 693
BstSFI	CTRYAG	3 cut(s)	115, 471, 542
BstSLI	GKGCMC	1 cut(s)	635
BstUI	CGCG	1 cut(s)	339
BstV1I	GCAGC	7 cut(s)	129, 300, 331, 601, 691, 860, 1010
BstV2I	GAAGAC	2 cut(s)	540, 1059
BstX2I	RGATCY	3 cut(s)	889, 977, 1099
BstYI	RGATCY	3 cut(s)	889, 977, 1099
Bsu36I	CCTNAGG	1 cut(s)	879
BsuRI	GGCC	2 cut(s)	552, 1044
BtgI	CCRYGG	3 cut(s)	337, 493, 554
BtsCI	GGATG	2 cut(s)	211, 1147
BveI	ACCTGC	1 cut(s)	933
Cfr13I	GGNCC	2 cut(s)	551, 639
Cfr42I	CCGCGG	1 cut(s)	340
CsiI	ACCWGGT	1 cut(s)	635
Csp6I	GTAC	5 cut(s)	85, 150, 159, 188, 836
CviAII	CATG	5 cut(s)	494, 511, 555, 902, 1057
CviQI	GTAC	5 cut(s)	85, 150, 159, 188, 836
DdeI	CTNAG	4 cut(s)	198, 569, 602, 879
DpnI	GATC	4 cut(s)	891, 979, 1074, 1101
DpnII	GATC	4 cut(s)	889, 977, 1072, 1099
Eam1104I	CTCTTC	3 cut(s)	54, 245, 855
EarI	CTCTTC	3 cut(s)	54, 245, 855
Eco130I	CCWWGG	3 cut(s)	493, 554, 1026
Eco147I	AGGCCT	1 cut(s)	1044
Eco47I	GGWCC	1 cut(s)	639
Eco57I	CTGAAG	1 cut(s)	894
Eco72I	CACGTG	1 cut(s)	444
Eco81I	CCTNAGG	1 cut(s)	879
EcoO109I	RGGNCCY	1 cut(s)	639
EcoRII	CCWGG	3 cut(s)	547, 635, 693
EcoT14I	CCWWGG	3 cut(s)	493, 554, 1026
EcoT22I	ATGCAT	2 cut(s)	440, 970
ErhI	CCWWGG	3 cut(s)	493, 554, 1026
FaeI	CATG	5 cut(s)	497, 514, 558, 905, 1060
FaqI	GGGAC	4 cut(s)	78, 413, 625, 912
FatI	CATG	5 cut(s)	493, 510, 554, 901, 1056
FbaI	TGATCA	1 cut(s)	1072
Fnu4HI	GCNGC	7 cut(s)	118, 314, 345, 590, 680, 874, 999
FokI	GGATG	2 cut(s)	218, 1154
Fsp4HI	GCNGC	7 cut(s)	118, 314, 345, 590, 680, 874, 999
FspBI	CTAG	2 cut(s)	656, 995
GluI	GCNGC	7 cut(s)	118, 314, 345, 590, 680, 874, 999
HaeIII	GGCC	2 cut(s)	552, 1044
HapII	CCGG	1 cut(s)	96
Hin1II	CATG	5 cut(s)	497, 514, 558, 905, 1060
HinfI	GANTC	6 cut(s)	77, 145, 263, 559, 596, 1088
HpaII	CCGG	1 cut(s)	96
HphI	GGTGA	1 cut(s)	1157
Hpy166II	GTNNAC	4 cut(s)	447, 620, 836, 1013
Hpy188I	TCNGA	8 cut(s)	201, 226, 411, 605, 786, 973, 1099, 1195
Hpy188III	TCNNGA	3 cut(s)	530, 1121, 1133
Hpy8I	GTNNAC	4 cut(s)	447, 620, 836, 1013
HpyAV	CCTTC	5 cut(s)	131, 744, 824, 1142, 1205
HpyCH4III	ACNGT	1 cut(s)	743
HpyCH4IV	ACGT	2 cut(s)	443, 775
HpyCH4V	TGCA	7 cut(s)	66, 117, 294, 438, 827, 968, 989
HpyF10VI	GCNNNNNNNGC	8 cut(s)	63, 108, 117, 126, 171, 266, 630, 995
HpyF3I	CTNAG	4 cut(s)	198, 569, 602, 879
HpySE526I	ACGT	2 cut(s)	443, 775
Hsp92II	CATG	5 cut(s)	497, 514, 558, 905, 1060
Ksp22I	TGATCA	1 cut(s)	1072
KspI	CCGCGG	1 cut(s)	340
Kzo9I	GATC	4 cut(s)	889, 977, 1072, 1099
LmnI	GCTCC	3 cut(s)	107, 116, 1028
Lsp1109I	GCAGC	7 cut(s)	129, 300, 331, 601, 691, 860, 1010
LweI	GCATC	2 cut(s)	447, 977
MabI	ACCWGGT	1 cut(s)	635
MaeI	CTAG	2 cut(s)	656, 995
MaeII	ACGT	2 cut(s)	443, 775
MaeIII	GTNAC	2 cut(s)	769, 947
MalI	GATC	4 cut(s)	891, 979, 1074, 1101
MboI	GATC	4 cut(s)	889, 977, 1072, 1099
MboII	GAAGA	7 cut(s)	71, 262, 442, 545, 722, 872, 1064
MfeI	CAATTG	1 cut(s)	450
MflI	RGATCY	3 cut(s)	889, 977, 1099
MhlI	GDGCHC	1 cut(s)	635
MluCI	AATT	4 cut(s)	450, 575, 802, 1113
MlyI	GAGTC	1 cut(s)	1082
MmeI	TCCRAC	1 cut(s)	957
Mph1103I	ATGCAT	2 cut(s)	440, 970
MroXI	GAANNNNTTC	1 cut(s)	1165
MseI	TTAA	7 cut(s)	132, 327, 662, 762, 843, 1082, 1116
MspA1I	CMGCKG	4 cut(s)	339, 568, 592, 873
MspCI	CTTAAG	1 cut(s)	326
MspI	CCGG	1 cut(s)	96
MspR9I	CCNGG	4 cut(s)	96, 549, 637, 695
MunI	CAATTG	1 cut(s)	450
MvaI	CCWGG	3 cut(s)	549, 637, 695
MvnI	CGCG	1 cut(s)	339
MwoI	GCNNNNNNNGC	8 cut(s)	63, 108, 117, 126, 171, 266, 630, 995
NciI	CCSGG	1 cut(s)	96
NcoI	CCATGG	2 cut(s)	493, 554
NdeII	GATC	4 cut(s)	889, 977, 1072, 1099
NlaIII	CATG	5 cut(s)	497, 514, 558, 905, 1060
NlaIV	GGNNCC	2 cut(s)	634, 641
NmuCI	GTSAC	2 cut(s)	769, 947
NsiI	ATGCAT	2 cut(s)	440, 970
PaqCI	CACCTGC	1 cut(s)	933
PceI	AGGCCT	1 cut(s)	1044
PdmI	GAANNNNTTC	1 cut(s)	1165
PfeI	GAWTC	5 cut(s)	77, 145, 263, 559, 596
PkrI	GCNGC	7 cut(s)	119, 315, 346, 591, 681, 875, 1000
PleI	GAGTC	1 cut(s)	1082
PmaCI	CACGTG	1 cut(s)	444
PmlI	CACGTG	1 cut(s)	444
PpsI	GAGTC	1 cut(s)	1082
Ppu21I	YACGTR	2 cut(s)	444, 776
PpuMI	RGGWCCY	1 cut(s)	639
PshBI	ATTAAT	1 cut(s)	1116
Psp5II	RGGWCCY	1 cut(s)	639
Psp6I	CCWGG	3 cut(s)	547, 635, 693
PspCI	CACGTG	1 cut(s)	444
PspGI	CCWGG	3 cut(s)	547, 635, 693
PspN4I	GGNNCC	2 cut(s)	634, 641
PspPI	GGNCC	2 cut(s)	551, 639
PspPPI	RGGWCCY	1 cut(s)	639
PstI	CTGCAG	1 cut(s)	119
PsuI	RGATCY	3 cut(s)	889, 977, 1099
PvuII	CAGCTG	3 cut(s)	568, 592, 873
RsaI	GTAC	5 cut(s)	86, 151, 160, 189, 837
RsaNI	GTAC	5 cut(s)	85, 150, 159, 188, 836
SacII	CCGCGG	1 cut(s)	340
SaqAI	TTAA	7 cut(s)	132, 327, 662, 762, 843, 1082, 1116
SatI	GCNGC	7 cut(s)	118, 314, 345, 590, 680, 874, 999
Sau3AI	GATC	4 cut(s)	889, 977, 1072, 1099
Sau96I	GGNCC	2 cut(s)	551, 639
SchI	GAGTC	1 cut(s)	1082
ScrFI	CCNGG	4 cut(s)	96, 549, 637, 695
SduI	GDGCHC	1 cut(s)	635
SexAI	ACCWGGT	1 cut(s)	635
SfaNI	GCATC	2 cut(s)	447, 977
SfcI	CTRYAG	3 cut(s)	115, 471, 542
Sfr303I	CCGCGG	1 cut(s)	340
SgrBI	CCGCGG	1 cut(s)	340
SinI	GGWCC	1 cut(s)	639
SmlI	CTYRAG	2 cut(s)	239, 326
SmoI	CTYRAG	2 cut(s)	239, 326
Sse9I	AATT	4 cut(s)	450, 575, 802, 1113
SseBI	AGGCCT	1 cut(s)	1044
SsiI	CCGC	3 cut(s)	337, 339, 460
SspI	AATATT	1 cut(s)	1221
SspMI	CTAG	2 cut(s)	656, 995
StuI	AGGCCT	1 cut(s)	1044
StyD4I	CCNGG	4 cut(s)	94, 547, 635, 693
StyI	CCWWGG	3 cut(s)	493, 554, 1026
TaaI	ACNGT	1 cut(s)	743
TaiI	ACGT	2 cut(s)	446, 778
TasI	AATT	4 cut(s)	450, 575, 802, 1113
TatI	WGTACW	1 cut(s)	84
TfiI	GAWTC	5 cut(s)	77, 145, 263, 559, 596
Tru1I	TTAA	7 cut(s)	132, 327, 662, 762, 843, 1082, 1116
Tru9I	TTAA	7 cut(s)	132, 327, 662, 762, 843, 1082, 1116
TseFI	GTSAC	2 cut(s)	769, 947
TseI	GCWGC	7 cut(s)	117, 313, 344, 589, 679, 873, 998
Tsp45I	GTSAC	2 cut(s)	769, 947
TspDTI	ATGAA	3 cut(s)	455, 519, 527
TspGWI	ACGGA	2 cut(s)	27, 638
Vha464I	CTTAAG	1 cut(s)	326
VpaK11BI	GGWCC	1 cut(s)	639
VspI	ATTAAT	1 cut(s)	1116
XcmI	CCANNNNNNNNNTGG	2 cut(s)	199, 545
XmnI	GAANNNNTTC	1 cut(s)	1165
XspI	CTAG	2 cut(s)	656, 995
Zsp2I	ATGCAT	2 cut(s)	440, 970

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.