Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr02

Orthogroup ID

OG0006202

Physical Location & Seq

Genomic Coordinates Reverse (-)

37251101 .. 37254242

Gene Structure 3142 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD02G1318000.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1239 bp

ATGGAGGAAGGAGGAGGAGAAGCTGGTTCAGCGAAACCAAACCCGAAAATATGCCAAGAGTGCAAAGAGACGGCGTCCAAGTACAAATGCCCAGGCTGCTCCGTACGCTCCTGTAGCCTTCCGTGCGTCAAGGCCCACAAGCTTCGTTCTGGCTGTACGGGCAAGAGGCCCCTAACCAACTTCGTCCCCCTCTCTCAGATGGACAATAATCAGCTCCTTTCTGACTACAATTTGCTTGAGGAAGTGAAGAGGGTTGCTGAGTCTGCTCAGAGATTGAGAAATAAGTTGTGCAGATACAATAATTTTAGGCTACCCTTTTGCCTTAAAAGCCTTCGGAGTGCTGCTGCCAGTCGCAGGACGAAACTCTTATTTCTACCAAGTGGAATGTCAAAAAGGGAGAAAAATCAAACTCGATATGATCAAAGGAAGAAATGCATCTCCTGGACAATTGAATGGCGATTTCATTCAATGGATGTTGTTTTAACTGACCATGAAGTAAATGAAAACATGAACCTCTGCTCTCTTATCGAAAACCATCTAAAACCTGGGCCATGGAATCATCACCTAAAGCTATTCTGTGAGGAACAGCTGGACTCTCTCAAGCTTTTCATTCGTAAATATCCCAAGGGCACTAGGTCACCTTTCTGTGAGTTGGATATAAGAGTTCCGATAAGGCAGCAGTTAGCAAACTTAGTTATTTTGGAATACCCTGTCATTTATGTTTTTCTCCCTTCGCACAGTCTTGATTTTGAAGTAGTTAAAAATTCCCCTCCTGCTTTCAGCAAACCAGAGCTTAGGACTTATGGAAGAAATGATTTGAGCGCAGGAGGTGTTACCTTTAAGGAGGAGGAACTAGAAGACAACATCTATCCTAAGGTCTTTGATCTCATGAAACATGAGACTTCAAGTTCCCCACCTAATATATCTAATAAAAGGAGGTGTGAGAAGCCACCCGATGATTCATTTGCTAGGCCTTTGTCTGTAACTGTGGAAACTTGCAACGATTCACATTCGAGCTCCGATGCTAAGAAGCAAGTGTTTTTTGAAGACATGGACTTTGCTTTTGATCAAGGCTTAATAGACGAGTACTCAGGTCTTATGGCAGAAATTAATCCTGATGATTTTCTTGATTTGGAAGGTGAATTTACCAAGGAAGGAGTAGCAGAAAGAAATCTTTCAAGTGTCAGGAGATTCTTATTGGCAGATGACGATATAGAGGAGGGAGAAATTTTAGAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TIC20 zf-HIT

Protein Analysis

413

Amino Acids

47.14

Weight (kDa)

6.21

Isoelectric Point (pI)

56.24

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-HIT	PF04438	16 - 44	4.8e-08	HIT zinc finger
BCD1	PF25790	109 - 252	3.9e-53	BCD1 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006202)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G04945 AT1G04945 AT1G04945 AT1G04945
fragaria_vesca	FvH4_5g32720
malus_domestica	MD02G1318000.v1.1 MD07G1003300.v1.1
prunus_persica	Prupe.2G005000_v2.0.a1 Prupe.2G005000_v2.0.a1 Prupe.2G005000_v2.0.a1 Prupe.2G005000_v2.0.a1 Prupe.2G005000_v2.0.a1 Prupe.2G005000_v2.0.a1
pyrus_communis	pycom02g26620 pycom07g00330
rosa_chinensis	RchiOBHm_Chr7g0230361
rosa_laevigata	RLG00000001498
rosa_multiflora	Rmu_sc0002541.1_g000034 Rmu_sc0007103.1_g000018
rosa_roxburghii	Rroxscaffold_3G00230200
rosa_rugosa	Rorug07G0260200
rosa_samantha	Rh7AG409600 Rh7AG411300 Rh7BG389400 Rh7CG429000 Rh7DG407600
rosa_wichuraiana	Rw7G034210

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcsI	RAATTY	3 cut(s)	763, 1142, 1227
AcyI	GRCGYC	1 cut(s)	74
AfaI	GTAC	4 cut(s)	83, 105, 157, 1088
AfiI	CCNNNNNNNGG	1 cut(s)	354
AgsI	TTSAA	6 cut(s)	452, 468, 752, 906, 1046, 1179
AjnI	CCWGG	3 cut(s)	91, 440, 544
AluBI	AGCT	8 cut(s)	23, 142, 214, 571, 589, 604, 793, 1017
AluI	AGCT	8 cut(s)	23, 142, 214, 571, 589, 604, 793, 1017
Alw21I	GWGCWC	1 cut(s)	1019
Alw26I	GTCTC	2 cut(s)	62, 893
AoxI	GGCC	4 cut(s)	132, 167, 548, 971
ApeKI	GCWGC	4 cut(s)	96, 341, 344, 676
ApoI	RAATTY	3 cut(s)	763, 1142, 1227
ArsI	GACNNNNNNTTYG	4 cut(s)	1040, 1046, 1072, 1078
AseI	ATTAAT	1 cut(s)	1110
Asp700I	GAANNNNTTC	1 cut(s)	1174
AspLEI	GCGC	1 cut(s)	824
AspS9I	GGNCC	3 cut(s)	133, 168, 548
AsuHPI	GGTGA	3 cut(s)	554, 630, 1151
AxyI	CCTNAGG	1 cut(s)	873
BaeGI	GKGCMC	1 cut(s)	632
BanII	GRGCYC	1 cut(s)	1019
BbsI	GAAGAC	2 cut(s)	864, 1053
Bbv12I	GWGCWC	1 cut(s)	1019
BbvI	GCAGC	4 cut(s)	83, 328, 331, 688
BccI	CCATC	2 cut(s)	193, 543
BceAI	ACGGC	1 cut(s)	87
BciT130I	CCWGG	3 cut(s)	93, 442, 546
BclI	TGATCA	2 cut(s)	418, 1066
BcoDI	GTCTC	2 cut(s)	62, 893
BfaI	CTAG	3 cut(s)	633, 854, 969
BfmI	CTRYAG	1 cut(s)	112
BisI	GCNGC	4 cut(s)	97, 342, 345, 677
BlsI	GCNGC	4 cut(s)	98, 343, 346, 678
BmcAI	AGTACT	1 cut(s)	1088
Bme1390I	CCNGG	3 cut(s)	93, 442, 546
BmgT120I	GGNCC	3 cut(s)	133, 168, 548
BmiI	GGNNCC	1 cut(s)	170
BmrFI	CCNGG	3 cut(s)	93, 442, 546
BmsI	GCATC	2 cut(s)	444, 1012
BpiI	GAAGAC	2 cut(s)	864, 1053
Bpu10I	CCTNAGC	1 cut(s)	794
BpuEI	CTTGAG	2 cut(s)	257, 584
BsaHI	GRCGYC	1 cut(s)	74
BsaJI	CCNNGG	5 cut(s)	91, 545, 551, 624, 1149
Bsc4I	CCNNNNNNNGG	1 cut(s)	354
Bse1I	ACTGG	1 cut(s)	348
Bse21I	CCTNAGG	1 cut(s)	873
BseBI	CCWGG	3 cut(s)	93, 442, 546
BseDI	CCNNGG	5 cut(s)	91, 545, 551, 624, 1149
BseGI	GGATG	1 cut(s)	478
BseLI	CCNNNNNNNGG	1 cut(s)	354
BseMII	CTCAG	4 cut(s)	209, 249, 281, 1104
BseNI	ACTGG	1 cut(s)	348
BseRI	GAGGAG	4 cut(s)	27, 30, 860, 1232
BseSI	GKGCMC	1 cut(s)	632
BseXI	GCAGC	4 cut(s)	83, 328, 331, 688
BsgI	GTGCAG	1 cut(s)	310
BshFI	GGCC	4 cut(s)	134, 169, 550, 973
BsiHKAI	GWGCWC	1 cut(s)	1019
BsiWI	CGTACG	1 cut(s)	103
BslFI	GGGAC	1 cut(s)	170
BslI	CCNNNNNNNGG	1 cut(s)	354
BsmAI	GTCTC	2 cut(s)	62, 893
BsmBI	CGTCTC	1 cut(s)	62
BsmFI	GGGAC	1 cut(s)	170
BsnI	GGCC	4 cut(s)	134, 169, 550, 973
Bsp1286I	GDGCHC	2 cut(s)	632, 1019
Bsp143I	GATC	3 cut(s)	418, 883, 1066
Bsp19I	CCATGG	1 cut(s)	551
BspANI	GGCC	4 cut(s)	134, 169, 550, 973
BspCNI	CTCAG	4 cut(s)	208, 250, 280, 1103
BspHI	TCATGA	1 cut(s)	888
BspLI	GGNNCC	1 cut(s)	170
BsrI	ACTGG	1 cut(s)	348
BssECI	CCNNGG	5 cut(s)	91, 545, 551, 624, 1149
BssMI	GATC	3 cut(s)	418, 883, 1066
BssNI	GRCGYC	1 cut(s)	74
BssT1I	CCWWGG	3 cut(s)	551, 624, 1149
Bst2UI	CCWGG	3 cut(s)	93, 442, 546
Bst4CI	ACNGT	2 cut(s)	740, 988
Bst6I	CTCTTC	1 cut(s)	242
BstACI	GRCGYC	1 cut(s)	74
BstDEI	CTNAG	8 cut(s)	195, 258, 267, 691, 794, 873, 1026, 1090
BstDSI	CCRYGG	1 cut(s)	551
BstEII	GGTNACC	1 cut(s)	636
BstF5I	GGATG	1 cut(s)	478
BstHHI	GCGC	1 cut(s)	824
BstKTI	GATC	3 cut(s)	421, 886, 1069
BstMAI	GTCTC	2 cut(s)	62, 893
BstMBI	GATC	3 cut(s)	418, 883, 1066
BstMWI	GCNNNNNNNGC	9 cut(s)	29, 60, 96, 105, 114, 123, 159, 263, 327
BstNI	CCWGG	3 cut(s)	93, 442, 546
BstPI	GGTNACC	1 cut(s)	636
BstSCI	CCNGG	3 cut(s)	91, 440, 544
BstSFI	CTRYAG	1 cut(s)	112
BstSLI	GKGCMC	1 cut(s)	632
BstV1I	GCAGC	4 cut(s)	83, 328, 331, 688
BstV2I	GAAGAC	2 cut(s)	864, 1053
Bsu36I	CCTNAGG	1 cut(s)	873
BsuRI	GGCC	4 cut(s)	134, 169, 550, 973
BtgI	CCRYGG	1 cut(s)	551
BtsCI	GGATG	1 cut(s)	478
CciI	TCATGA	1 cut(s)	888
CfoI	GCGC	1 cut(s)	824
Cfr13I	GGNCC	3 cut(s)	133, 168, 548
CseI	GACGC	2 cut(s)	63, 115
Csp6I	GTAC	4 cut(s)	82, 104, 156, 1087
CviAII	CATG	6 cut(s)	491, 508, 552, 889, 896, 1051
CviQI	GTAC	4 cut(s)	82, 104, 156, 1087
DdeI	CTNAG	8 cut(s)	195, 258, 267, 691, 794, 873, 1026, 1090
DpnI	GATC	3 cut(s)	420, 885, 1068
DpnII	GATC	3 cut(s)	418, 883, 1066
Eam1104I	CTCTTC	1 cut(s)	242
EarI	CTCTTC	1 cut(s)	242
Ecl136II	GAGCTC	1 cut(s)	1017
Eco130I	CCWWGG	3 cut(s)	551, 624, 1149
Eco147I	AGGCCT	1 cut(s)	973
Eco24I	GRGCYC	1 cut(s)	1019
Eco53kI	GAGCTC	1 cut(s)	1017
Eco81I	CCTNAGG	1 cut(s)	873
Eco91I	GGTNACC	1 cut(s)	636
EcoICRI	GAGCTC	1 cut(s)	1017
EcoO109I	RGGNCCY	1 cut(s)	168
EcoO65I	GGTNACC	1 cut(s)	636
EcoRII	CCWGG	3 cut(s)	91, 440, 544
EcoT14I	CCWWGG	3 cut(s)	551, 624, 1149
EcoT22I	ATGCAT	1 cut(s)	437
EcoT38I	GRGCYC	1 cut(s)	1019
ErhI	CCWWGG	3 cut(s)	551, 624, 1149
Esp3I	CGTCTC	1 cut(s)	62
FaeI	CATG	6 cut(s)	494, 511, 555, 892, 899, 1054
FaqI	GGGAC	1 cut(s)	170
FatI	CATG	6 cut(s)	490, 507, 551, 888, 895, 1050
FbaI	TGATCA	2 cut(s)	418, 1066
Fnu4HI	GCNGC	4 cut(s)	97, 342, 345, 677
FokI	GGATG	1 cut(s)	485
FriOI	GRGCYC	1 cut(s)	1019
Fsp4HI	GCNGC	4 cut(s)	97, 342, 345, 677
FspBI	CTAG	3 cut(s)	633, 854, 969
GlaI	GCGC	1 cut(s)	823
GluI	GCNGC	4 cut(s)	97, 342, 345, 677
HaeIII	GGCC	4 cut(s)	134, 169, 550, 973
HgaI	GACGC	2 cut(s)	63, 115
HhaI	GCGC	1 cut(s)	824
Hin1I	GRCGYC	1 cut(s)	74
Hin1II	CATG	6 cut(s)	494, 511, 555, 892, 899, 1054
Hin6I	GCGC	1 cut(s)	822
HinP1I	GCGC	1 cut(s)	822
HindIII	AAGCTT	2 cut(s)	140, 602
HinfI	GANTC	6 cut(s)	260, 556, 593, 959, 1004, 1191
HphI	GGTGA	3 cut(s)	554, 630, 1151
Hpy188I	TCNGA	6 cut(s)	198, 223, 270, 336, 669, 1021
Hpy188III	TCNNGA	5 cut(s)	743, 889, 1115, 1127, 1186
HpyAV	CCTTC	5 cut(s)	128, 341, 741, 1130, 1148
HpyCH4III	ACNGT	2 cut(s)	740, 988
HpyCH4V	TGCA	4 cut(s)	63, 291, 435, 999
HpyF10VI	GCNNNNNNNGC	9 cut(s)	29, 60, 96, 105, 114, 123, 159, 263, 327
HpyF3I	CTNAG	8 cut(s)	195, 258, 267, 691, 794, 873, 1026, 1090
Hsp92I	GRCGYC	1 cut(s)	74
Hsp92II	CATG	6 cut(s)	494, 511, 555, 892, 899, 1054
HspAI	GCGC	1 cut(s)	822
Ksp22I	TGATCA	2 cut(s)	418, 1066
Kzo9I	GATC	3 cut(s)	418, 883, 1066
LmnI	GCTCC	4 cut(s)	104, 113, 219, 1022
Lsp1109I	GCAGC	4 cut(s)	83, 328, 331, 688
LweI	GCATC	2 cut(s)	444, 1012
MaeI	CTAG	3 cut(s)	633, 854, 969
MaeIII	GTNAC	3 cut(s)	636, 832, 982
MalI	GATC	3 cut(s)	420, 885, 1068
MboI	GATC	3 cut(s)	418, 883, 1066
MboII	GAAGA	5 cut(s)	259, 439, 819, 869, 1058
MfeI	CAATTG	1 cut(s)	447
MhlI	GDGCHC	2 cut(s)	632, 1019
MluCI	AATT	7 cut(s)	229, 301, 447, 763, 1107, 1142, 1227
MlyI	GAGTC	2 cut(s)	269, 587
MmeI	TCCRAC	1 cut(s)	633
Mph1103I	ATGCAT	1 cut(s)	437
MroXI	GAANNNNTTC	1 cut(s)	1174
MseI	TTAA	6 cut(s)	324, 482, 759, 840, 1076, 1110
MspA1I	CMGCKG	1 cut(s)	589
MspR9I	CCNGG	3 cut(s)	93, 442, 546
MunI	CAATTG	1 cut(s)	447
MvaI	CCWGG	3 cut(s)	93, 442, 546
MwoI	GCNNNNNNNGC	9 cut(s)	29, 60, 96, 105, 114, 123, 159, 263, 327
NcoI	CCATGG	1 cut(s)	551
NdeII	GATC	3 cut(s)	418, 883, 1066
NlaIII	CATG	6 cut(s)	494, 511, 555, 892, 899, 1054
NlaIV	GGNNCC	1 cut(s)	170
NmuCI	GTSAC	1 cut(s)	636
NsiI	ATGCAT	1 cut(s)	437
PagI	TCATGA	1 cut(s)	888
PceI	AGGCCT	1 cut(s)	973
PdmI	GAANNNNTTC	1 cut(s)	1174
PfeI	GAWTC	4 cut(s)	556, 959, 1004, 1191
Pfl23II	CGTACG	1 cut(s)	103
PflFI	GACNNNGTC	1 cut(s)	73
PfoI	TCCNGGA	1 cut(s)	440
PkrI	GCNGC	4 cut(s)	98, 343, 346, 678
PleI	GAGTC	2 cut(s)	268, 587
PpsI	GAGTC	2 cut(s)	268, 587
PshBI	ATTAAT	1 cut(s)	1110
Psp124BI	GAGCTC	1 cut(s)	1019
Psp6I	CCWGG	3 cut(s)	91, 440, 544
PspEI	GGTNACC	1 cut(s)	636
PspGI	CCWGG	3 cut(s)	91, 440, 544
PspLI	CGTACG	1 cut(s)	103
PspN4I	GGNNCC	1 cut(s)	170
PspPI	GGNCC	3 cut(s)	133, 168, 548
PsyI	GACNNNGTC	1 cut(s)	73
PvuII	CAGCTG	1 cut(s)	589
RsaI	GTAC	4 cut(s)	83, 105, 157, 1088
RsaNI	GTAC	4 cut(s)	82, 104, 156, 1087
SacI	GAGCTC	1 cut(s)	1019
SaqAI	TTAA	6 cut(s)	324, 482, 759, 840, 1076, 1110
SatI	GCNGC	4 cut(s)	97, 342, 345, 677
Sau3AI	GATC	3 cut(s)	418, 883, 1066
Sau96I	GGNCC	3 cut(s)	133, 168, 548
ScaI	AGTACT	1 cut(s)	1088
SchI	GAGTC	2 cut(s)	269, 587
ScrFI	CCNGG	3 cut(s)	93, 442, 546
SduI	GDGCHC	2 cut(s)	632, 1019
SfaNI	GCATC	2 cut(s)	444, 1012
SfcI	CTRYAG	1 cut(s)	112
SmlI	CTYRAG	2 cut(s)	236, 599
SmoI	CTYRAG	2 cut(s)	236, 599
Sse9I	AATT	7 cut(s)	229, 301, 447, 763, 1107, 1142, 1227
SseBI	AGGCCT	1 cut(s)	973
SspMI	CTAG	3 cut(s)	633, 854, 969
SstI	GAGCTC	1 cut(s)	1019
StuI	AGGCCT	1 cut(s)	973
StyD4I	CCNGG	3 cut(s)	91, 440, 544
StyI	CCWWGG	3 cut(s)	551, 624, 1149
TaaI	ACNGT	2 cut(s)	740, 988
TaqI	TCGA	3 cut(s)	412, 528, 1013
TasI	AATT	7 cut(s)	229, 301, 447, 763, 1107, 1142, 1227
TatI	WGTACW	2 cut(s)	81, 1086
TfiI	GAWTC	4 cut(s)	556, 959, 1004, 1191
Tru1I	TTAA	6 cut(s)	324, 482, 759, 840, 1076, 1110
Tru9I	TTAA	6 cut(s)	324, 482, 759, 840, 1076, 1110
TseFI	GTSAC	1 cut(s)	636
TseI	GCWGC	4 cut(s)	96, 341, 344, 676
Tsp45I	GTSAC	1 cut(s)	636
TspDTI	ATGAA	7 cut(s)	452, 507, 516, 524, 598, 905, 951
TspGWI	ACGGA	2 cut(s)	91, 111
Tth111I	GACNNNGTC	1 cut(s)	73
VspI	ATTAAT	1 cut(s)	1110
XapI	RAATTY	3 cut(s)	763, 1142, 1227
XcmI	CCANNNNNNNNNTGG	1 cut(s)	542
XmnI	GAANNNNTTC	1 cut(s)	1174
XspI	CTAG	3 cut(s)	633, 854, 969
ZrmI	AGTACT	1 cut(s)	1088
Zsp2I	ATGCAT	1 cut(s)	437

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.