Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr7

Orthogroup ID

OG0006202

Physical Location & Seq

Genomic Coordinates Reverse (-)

50652038 .. 50654181

Gene Structure 2144 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw7G034210.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1242 bp

ATGGAGGAGGACGGAGGAGAGGCAAAGACAAAGGCAAAGGCAAAGGCAAAGGCAAAGGCAATGTTATGCGAAGAGTGCAAAGCCAAAGAATCCAAGTACAAATGTCCCGGTTGCTCCATACGCTCCTGCAGCCTTCCCTGCGTTAAAGCCCACAAGATTCGTACCTCTTGTACGGGCAAGAGAAGCCAAACCCACTTCGTACCCATCTCTCAGATGGATGATAATCTCCTCCTTTCGGACTACAATCTGCTTGAGGAAGTGAAGAGGGTTGCTGATTCTGCTCAGAGATTGAGGAATAAGTTGTGCAGATACAATAGTTTTAGGCTGCCTTTTTATCTTAAGAGCCTCCGCGGTGCTGCCTTCAGCCGCAGAACTAAACTCTTGTTTTTGCCTACTGGTATGTCAAAGAGGGACAAAAATCAGACCCGATACGACACAAGGAAGAAATGCATCACATGGACCATTGAGTGGCGGTTTCATTCTACAGATGTAGTTCTAATTGACCATGGAGTAAATGAAAACATGAACCTCTCCTCTGTTCTTGAAGACCATCTACAGCCTGGCCCATGGAATCATAAGCTGAGGCAATTCTGTATAGAGCAGCTGGATTGTCTCAAGCTTTTTATTCGTAAACGCCCAAAGGGCACCAGGTCACCTTTTCGTGAGTTAGATTTAAGAGTTCCAATCAGGCAGCAATTAGCCAACCTGGATATTTTGGAATACCCTGTCATCTATGTTTTTCTTCCTTCACACAGTATTGATTTTGAAGTCGTTAAAGATGTCACTCGTAATGGTCACAAACAAGAGCTTCAGAATTATGGAAGTAATGACCCAGGTGCAGGAGGTGTACCCTTTAGGGAGGAGGAAATAGAAGAGGACAACAGCTGCCCTAAGGTGTTAGATCTAAAGGGACATGAGACTTCAGTTTCCCTGCCTCATATTTCCAACAACAGCAGGTGTGAGAAAGGGATAAATAATGCATCAGATAGATCTTTGTCTGCAACACTAGCAGCAGAAAATGGTTCACATTCCAGCTCCAAGGATAAGGAACAAGGCCTTTTTGAAGACATGGAGTTTGATTTTGATCAAGGCTTAATAGACTCGTATTCAGATCTTATTGCTGAAATTAATCCTGATGATTTTCTTGATTTGGATGGTGAAGGGATAGAAAGAAATCTTTCAGGTATCAGGGATTTCTTATTATCAGATGATGATATAGAGGAAGGGGAAATATTAGAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TIC20 zf-HIT

Protein Analysis

413

Amino Acids

47.03

Weight (kDa)

5.96

Isoelectric Point (pI)

55.92

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-HIT	PF04438	21 - 49	2.8e-08	HIT zinc finger
BCD1	PF25790	114 - 257	4.7e-50	BCD1 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006202)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G04945 AT1G04945 AT1G04945 AT1G04945
fragaria_vesca	FvH4_5g32720
malus_domestica	MD02G1318000.v1.1 MD07G1003300.v1.1
prunus_persica	Prupe.2G005000_v2.0.a1 Prupe.2G005000_v2.0.a1 Prupe.2G005000_v2.0.a1 Prupe.2G005000_v2.0.a1 Prupe.2G005000_v2.0.a1 Prupe.2G005000_v2.0.a1
pyrus_communis	pycom02g26620 pycom07g00330
rosa_chinensis	RchiOBHm_Chr7g0230361
rosa_laevigata	RLG00000001498
rosa_multiflora	Rmu_sc0002541.1_g000034 Rmu_sc0007103.1_g000018
rosa_roxburghii	Rroxscaffold_3G00230200
rosa_rugosa	Rorug07G0260200
rosa_samantha	Rh7AG409600 Rh7AG411300 Rh7BG389400 Rh7CG429000 Rh7DG407600
rosa_wichuraiana	Rw7G034210

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	945
Acc36I	ACCTGC	1 cut(s)	945
AccB1I	GGYRCC	1 cut(s)	644
AccB7I	CCANNNNNTGG	1 cut(s)	468
AccII	CGCG	1 cut(s)	351
AciI	CCGC	4 cut(s)	349, 351, 367, 472
AcuI	CTGAAG	3 cut(s)	346, 794, 906
AfaI	GTAC	5 cut(s)	98, 163, 172, 201, 849
AfiI	CCNNNNNNNGG	3 cut(s)	235, 468, 839
AflII	CTTAAG	1 cut(s)	338
AgsI	TTSAA	3 cut(s)	545, 767, 1064
AjnI	CCWGG	4 cut(s)	559, 647, 705, 832
AluBI	AGCT	6 cut(s)	580, 604, 619, 808, 885, 1035
AluI	AGCT	6 cut(s)	580, 604, 619, 808, 885, 1035
Alw26I	GTCTC	2 cut(s)	617, 911
AoxI	GGCC	2 cut(s)	562, 1054
ApeKI	GCWGC	7 cut(s)	129, 325, 356, 601, 691, 885, 1010
ArsI	GACNNNNNNTTYG	2 cut(s)	1058, 1090
AseI	ATTAAT	1 cut(s)	1128
Asp700I	GAANNNNTTC	1 cut(s)	1177
AspS9I	GGNCC	2 cut(s)	459, 563
AsuC2I	CCSGG	1 cut(s)	108
AsuHPI	GGTGA	2 cut(s)	645, 1169
AvaII	GGWCC	1 cut(s)	459
AxyI	CCTNAGG	1 cut(s)	891
BaeGI	GKGCMC	1 cut(s)	647
BaeI	ACNNNNGTAYC	2 cut(s)	301, 334
BanI	GGYRCC	1 cut(s)	644
BarI	GAAGNNNNNNTAC	2 cut(s)	537, 569
BbsI	GAAGAC	2 cut(s)	552, 1071
BbvCI	CCTCAGC	1 cut(s)	581
BbvI	GCAGC	7 cut(s)	141, 312, 343, 613, 703, 872, 1022
BccI	CCATC	4 cut(s)	208, 212, 558, 1148
BciT130I	CCWGG	4 cut(s)	561, 649, 707, 834
BclI	TGATCA	1 cut(s)	1084
BcnI	CCSGG	1 cut(s)	108
BcoDI	GTCTC	2 cut(s)	617, 911
BfaI	CTAG	1 cut(s)	1007
BfmI	CTRYAG	3 cut(s)	127, 483, 554
BfrI	CTTAAG	1 cut(s)	338
BfuAI	ACCTGC	1 cut(s)	945
BglI	GCCNNNNNGGC	1 cut(s)	642
BglII	AGATCT	3 cut(s)	901, 989, 1111
BisI	GCNGC	8 cut(s)	130, 326, 357, 367, 602, 692, 886, 1011
BlsI	GCNGC	8 cut(s)	131, 327, 358, 368, 603, 693, 887, 1012
Bme1390I	CCNGG	5 cut(s)	108, 561, 649, 707, 834
Bme18I	GGWCC	1 cut(s)	459
BmgT120I	GGNCC	2 cut(s)	459, 563
BmiI	GGNNCC	1 cut(s)	646
BmrFI	CCNGG	5 cut(s)	108, 561, 649, 707, 834
BmsI	GCATC	2 cut(s)	459, 989
BpiI	GAAGAC	2 cut(s)	552, 1071
Bpu10I	CCTNAGC	1 cut(s)	581
BpuEI	CTTGAG	2 cut(s)	272, 599
BpuMI	CCSGG	1 cut(s)	108
BsaBI	GATNNNNATC	2 cut(s)	222, 1083
BsaJI	CCNNGG	5 cut(s)	349, 505, 566, 832, 1038
Bsc4I	CCNNNNNNNGG	3 cut(s)	235, 468, 839
Bse1I	ACTGG	1 cut(s)	400
Bse21I	CCTNAGG	1 cut(s)	891
Bse3DI	GCAATG	1 cut(s)	66
Bse8I	GATNNNNATC	2 cut(s)	222, 1083
BseBI	CCWGG	4 cut(s)	561, 649, 707, 834
BseDI	CCNNGG	5 cut(s)	349, 505, 566, 832, 1038
BseGI	GGATG	2 cut(s)	223, 1159
BseJI	GATNNNNATC	2 cut(s)	222, 1083
BseLI	CCNNNNNNNGG	3 cut(s)	235, 468, 839
BseMI	GCAATG	1 cut(s)	66
BseMII	CTCAG	3 cut(s)	224, 296, 572
BseNI	ACTGG	1 cut(s)	400
BseRI	GAGGAG	5 cut(s)	20, 30, 218, 523, 875
BseSI	GKGCMC	1 cut(s)	647
BseXI	GCAGC	7 cut(s)	141, 312, 343, 613, 703, 872, 1022
BsgI	GTGCAG	2 cut(s)	325, 858
Bsh1236I	CGCG	1 cut(s)	351
BshFI	GGCC	2 cut(s)	564, 1056
BshNI	GGYRCC	1 cut(s)	644
BsiSI	CCGG	1 cut(s)	108
BslFI	GGGAC	3 cut(s)	90, 425, 924
BslI	CCNNNNNNNGG	3 cut(s)	235, 468, 839
BsmAI	GTCTC	2 cut(s)	617, 911
BsmFI	GGGAC	3 cut(s)	90, 425, 924
BsnI	GGCC	2 cut(s)	564, 1056
Bsp1286I	GDGCHC	1 cut(s)	647
Bsp143I	GATC	4 cut(s)	901, 989, 1084, 1111
Bsp19I	CCATGG	2 cut(s)	505, 566
BspACI	CCGC	4 cut(s)	349, 351, 367, 472
BspANI	GGCC	2 cut(s)	564, 1056
BspCNI	CTCAG	3 cut(s)	223, 295, 573
BspFNI	CGCG	1 cut(s)	351
BspLI	GGNNCC	1 cut(s)	646
BspMAI	CTGCAG	1 cut(s)	131
BspMI	ACCTGC	1 cut(s)	945
BspT107I	GGYRCC	1 cut(s)	644
BspTI	CTTAAG	1 cut(s)	338
BsrDI	GCAATG	1 cut(s)	66
BsrI	ACTGG	1 cut(s)	400
BssECI	CCNNGG	5 cut(s)	349, 505, 566, 832, 1038
BssMI	GATC	4 cut(s)	901, 989, 1084, 1111
BssT1I	CCWWGG	3 cut(s)	505, 566, 1038
Bst2UI	CCWGG	4 cut(s)	561, 649, 707, 834
Bst4CI	ACNGT	1 cut(s)	755
Bst6I	CTCTTC	3 cut(s)	66, 257, 867
BstAFI	CTTAAG	1 cut(s)	338
BstDEI	CTNAG	4 cut(s)	210, 282, 581, 891
BstDSI	CCRYGG	3 cut(s)	349, 505, 566
BstEII	GGTNACC	1 cut(s)	651
BstF5I	GGATG	2 cut(s)	223, 1159
BstFNI	CGCG	1 cut(s)	351
BstKTI	GATC	4 cut(s)	904, 992, 1087, 1114
BstMAI	GTCTC	2 cut(s)	617, 911
BstMBI	GATC	4 cut(s)	901, 989, 1084, 1111
BstMWI	GCNNNNNNNGC	8 cut(s)	75, 120, 129, 138, 183, 278, 642, 1007
BstNI	CCWGG	4 cut(s)	561, 649, 707, 834
BstPI	GGTNACC	1 cut(s)	651
BstSCI	CCNGG	5 cut(s)	106, 559, 647, 705, 832
BstSFI	CTRYAG	3 cut(s)	127, 483, 554
BstSLI	GKGCMC	1 cut(s)	647
BstUI	CGCG	1 cut(s)	351
BstV1I	GCAGC	7 cut(s)	141, 312, 343, 613, 703, 872, 1022
BstV2I	GAAGAC	2 cut(s)	552, 1071
BstX2I	RGATCY	3 cut(s)	901, 989, 1111
BstYI	RGATCY	3 cut(s)	901, 989, 1111
Bsu36I	CCTNAGG	1 cut(s)	891
BsuRI	GGCC	2 cut(s)	564, 1056
BtgI	CCRYGG	3 cut(s)	349, 505, 566
BtsCI	GGATG	2 cut(s)	223, 1159
BveI	ACCTGC	1 cut(s)	945
Cfr13I	GGNCC	2 cut(s)	459, 563
Cfr42I	CCGCGG	1 cut(s)	352
CsiI	ACCWGGT	1 cut(s)	647
Csp6I	GTAC	5 cut(s)	97, 162, 171, 200, 848
CviAII	CATG	6 cut(s)	456, 506, 523, 567, 914, 1069
CviQI	GTAC	5 cut(s)	97, 162, 171, 200, 848
DdeI	CTNAG	4 cut(s)	210, 282, 581, 891
DpnI	GATC	4 cut(s)	903, 991, 1086, 1113
DpnII	GATC	4 cut(s)	901, 989, 1084, 1111
Eam1104I	CTCTTC	3 cut(s)	66, 257, 867
EarI	CTCTTC	3 cut(s)	66, 257, 867
Eco130I	CCWWGG	3 cut(s)	505, 566, 1038
Eco147I	AGGCCT	1 cut(s)	1056
Eco47I	GGWCC	1 cut(s)	459
Eco57I	CTGAAG	3 cut(s)	346, 794, 906
Eco81I	CCTNAGG	1 cut(s)	891
Eco91I	GGTNACC	1 cut(s)	651
EcoO65I	GGTNACC	1 cut(s)	651
EcoRII	CCWGG	4 cut(s)	559, 647, 705, 832
EcoT14I	CCWWGG	3 cut(s)	505, 566, 1038
EcoT22I	ATGCAT	2 cut(s)	452, 982
ErhI	CCWWGG	3 cut(s)	505, 566, 1038
FaeI	CATG	6 cut(s)	459, 509, 526, 570, 917, 1072
FaqI	GGGAC	3 cut(s)	90, 425, 924
FatI	CATG	6 cut(s)	455, 505, 522, 566, 913, 1068
FbaI	TGATCA	1 cut(s)	1084
Fnu4HI	GCNGC	8 cut(s)	130, 326, 357, 367, 602, 692, 886, 1011
FokI	GGATG	2 cut(s)	230, 1166
Fsp4HI	GCNGC	8 cut(s)	130, 326, 357, 367, 602, 692, 886, 1011
FspBI	CTAG	1 cut(s)	1007
GluI	GCNGC	8 cut(s)	130, 326, 357, 367, 602, 692, 886, 1011
HaeIII	GGCC	2 cut(s)	564, 1056
HapII	CCGG	1 cut(s)	108
Hin1II	CATG	6 cut(s)	459, 509, 526, 570, 917, 1072
HindIII	AAGCTT	1 cut(s)	617
HinfI	GANTC	5 cut(s)	89, 157, 275, 571, 1100
HpaII	CCGG	1 cut(s)	108
HphI	GGTGA	2 cut(s)	645, 1169
Hpy166II	GTNNAC	3 cut(s)	632, 848, 1025
Hpy188I	TCNGA	8 cut(s)	213, 238, 285, 423, 813, 985, 1111, 1207
Hpy188III	TCNNGA	4 cut(s)	542, 662, 1133, 1145
Hpy8I	GTNNAC	3 cut(s)	632, 848, 1025
HpyAV	CCTTC	5 cut(s)	143, 370, 756, 1154, 1217
HpyCH4III	ACNGT	1 cut(s)	755
HpyCH4V	TGCA	7 cut(s)	78, 129, 306, 450, 839, 980, 1001
HpyF10VI	GCNNNNNNNGC	8 cut(s)	75, 120, 129, 138, 183, 278, 642, 1007
HpyF3I	CTNAG	4 cut(s)	210, 282, 581, 891
Hsp92II	CATG	6 cut(s)	459, 509, 526, 570, 917, 1072
Ksp22I	TGATCA	1 cut(s)	1084
KspI	CCGCGG	1 cut(s)	352
Kzo9I	GATC	4 cut(s)	901, 989, 1084, 1111
LmnI	GCTCC	3 cut(s)	119, 128, 1040
Lsp1109I	GCAGC	7 cut(s)	141, 312, 343, 613, 703, 872, 1022
LweI	GCATC	2 cut(s)	459, 989
MabI	ACCWGGT	1 cut(s)	647
MaeI	CTAG	1 cut(s)	1007
MaeIII	GTNAC	3 cut(s)	651, 781, 794
MalI	GATC	4 cut(s)	903, 991, 1086, 1113
MboI	GATC	4 cut(s)	901, 989, 1084, 1111
MboII	GAAGA	7 cut(s)	83, 274, 454, 557, 734, 884, 1076
MflI	RGATCY	3 cut(s)	901, 989, 1111
MhlI	GDGCHC	1 cut(s)	647
MluCI	AATT	5 cut(s)	498, 587, 695, 814, 1125
MlyI	GAGTC	1 cut(s)	1094
MmeI	TCCRAC	1 cut(s)	969
Mph1103I	ATGCAT	2 cut(s)	452, 982
MroXI	GAANNNNTTC	1 cut(s)	1177
MseI	TTAA	6 cut(s)	144, 339, 674, 774, 1094, 1128
MspA1I	CMGCKG	3 cut(s)	351, 604, 885
MspCI	CTTAAG	1 cut(s)	338
MspI	CCGG	1 cut(s)	108
MspR9I	CCNGG	5 cut(s)	108, 561, 649, 707, 834
MvaI	CCWGG	4 cut(s)	561, 649, 707, 834
MvnI	CGCG	1 cut(s)	351
MwoI	GCNNNNNNNGC	8 cut(s)	75, 120, 129, 138, 183, 278, 642, 1007
NciI	CCSGG	1 cut(s)	108
NcoI	CCATGG	2 cut(s)	505, 566
NdeII	GATC	4 cut(s)	901, 989, 1084, 1111
NlaIII	CATG	6 cut(s)	459, 509, 526, 570, 917, 1072
NlaIV	GGNNCC	1 cut(s)	646
NmuCI	GTSAC	3 cut(s)	651, 781, 794
NsiI	ATGCAT	2 cut(s)	452, 982
PaqCI	CACCTGC	1 cut(s)	945
PceI	AGGCCT	1 cut(s)	1056
PdmI	GAANNNNTTC	1 cut(s)	1177
PfeI	GAWTC	4 cut(s)	89, 157, 275, 571
PflMI	CCANNNNNTGG	1 cut(s)	468
PkrI	GCNGC	8 cut(s)	131, 327, 358, 368, 603, 693, 887, 1012
PleI	GAGTC	1 cut(s)	1094
PpsI	GAGTC	1 cut(s)	1094
PshBI	ATTAAT	1 cut(s)	1128
Psp6I	CCWGG	4 cut(s)	559, 647, 705, 832
PspEI	GGTNACC	1 cut(s)	651
PspGI	CCWGG	4 cut(s)	559, 647, 705, 832
PspN4I	GGNNCC	1 cut(s)	646
PspPI	GGNCC	2 cut(s)	459, 563
PstI	CTGCAG	1 cut(s)	131
PsuI	RGATCY	3 cut(s)	901, 989, 1111
PvuII	CAGCTG	2 cut(s)	604, 885
RsaI	GTAC	5 cut(s)	98, 163, 172, 201, 849
RsaNI	GTAC	5 cut(s)	97, 162, 171, 200, 848
SacII	CCGCGG	1 cut(s)	352
SaqAI	TTAA	6 cut(s)	144, 339, 674, 774, 1094, 1128
SatI	GCNGC	8 cut(s)	130, 326, 357, 367, 602, 692, 886, 1011
Sau3AI	GATC	4 cut(s)	901, 989, 1084, 1111
Sau96I	GGNCC	2 cut(s)	459, 563
SchI	GAGTC	1 cut(s)	1094
ScrFI	CCNGG	5 cut(s)	108, 561, 649, 707, 834
SduI	GDGCHC	1 cut(s)	647
SexAI	ACCWGGT	1 cut(s)	647
SfaNI	GCATC	2 cut(s)	459, 989
SfcI	CTRYAG	3 cut(s)	127, 483, 554
Sfr303I	CCGCGG	1 cut(s)	352
SgrBI	CCGCGG	1 cut(s)	352
SinI	GGWCC	1 cut(s)	459
SmlI	CTYRAG	3 cut(s)	251, 338, 614
SmoI	CTYRAG	3 cut(s)	251, 338, 614
Sse9I	AATT	5 cut(s)	498, 587, 695, 814, 1125
SseBI	AGGCCT	1 cut(s)	1056
SsiI	CCGC	4 cut(s)	349, 351, 367, 472
SspI	AATATT	1 cut(s)	1233
SspMI	CTAG	1 cut(s)	1007
StuI	AGGCCT	1 cut(s)	1056
StyD4I	CCNGG	5 cut(s)	106, 559, 647, 705, 832
StyI	CCWWGG	3 cut(s)	505, 566, 1038
TaaI	ACNGT	1 cut(s)	755
TasI	AATT	5 cut(s)	498, 587, 695, 814, 1125
TatI	WGTACW	1 cut(s)	96
TauI	GCSGC	1 cut(s)	369
TfiI	GAWTC	4 cut(s)	89, 157, 275, 571
Tru1I	TTAA	6 cut(s)	144, 339, 674, 774, 1094, 1128
Tru9I	TTAA	6 cut(s)	144, 339, 674, 774, 1094, 1128
TseFI	GTSAC	3 cut(s)	651, 781, 794
TseI	GCWGC	7 cut(s)	129, 325, 356, 601, 691, 885, 1010
Tsp45I	GTSAC	3 cut(s)	651, 781, 794
TspDTI	ATGAA	3 cut(s)	467, 531, 539
TspGWI	ACGGA	1 cut(s)	27
Van91I	CCANNNNNTGG	1 cut(s)	468
Vha464I	CTTAAG	1 cut(s)	338
VpaK11BI	GGWCC	1 cut(s)	459
VspI	ATTAAT	1 cut(s)	1128
XcmI	CCANNNNNNNNNTGG	2 cut(s)	211, 557
XmnI	GAANNNNTTC	1 cut(s)	1177
XspI	CTAG	1 cut(s)	1007
Zsp2I	ATGCAT	2 cut(s)	452, 982

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.