Prupe.2G005000_v2.0.a1

Box C D snoRNA protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp02
OG0006202
Physical Location & Seq
Forward (+)
491565 .. 495683
4119 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.2G005000.6

Sequence Viewer

Length: 1278 bp
ATGGAGGAAGGAGGAGAAGCAGGTTCTGCAAAACCAAACCCAACAGTCGCCCAAATATGCGAAGAGTGCAAAGCGAACCCATCCAAGTACAAATGTCCAGGTTGCTCCATACGTTCCTGTAGCCTACCCTGCGTAAAAGCTCACAAGCTTCGCACTGGTTGTACGGGCAAGAGGAACCAAACCAACTTCGTCCCGCTCTCTCAGATTGACAATAATCAACTCCTTTCTGACTATAATTTACTTGAGGAAGTGAAGAGGGTTTCTGAATCTGCTCAGAGATTGAGAAATAAGTTATGCAGATATAATTATTATAGGCTACCCGATCACCTTAAAAGCCTCCGGGGTGCTGCATCCAGTCGCAGAACGAAACTCTTGTTTCTACCAAGTGGAATGTCAAAAAGGGAGAAAAATCAAACTCGATATGACCGAAGTCAAGTTGCAAACTCTCGTCTATATTTGAAGAAGAAATGCATCTCCTGGACGATTGAATGGCGATTTCATTCAACGGATGTTGTTTTAACTGACCATGAAGTAAATGAAAACACGAAGTTCTGCTCTATTATTGAGAACCATCTAAAACCTGGTCCATGGAATCATCAGCTAAGACTATTCTGTGAAGAGCAGCTGGATTGTCTCAGGCTTTTTATTCGTAAATATCCAAAGGGCGCCAGGTCACCTTTATGTGAGTTGGACATAAGAGTTCCAATAAGGCAGCAGTTAACCAACTTGGTTATTTTGGAATATCCTGTAATCTATGTTTTTCTCCCTTCACAGAGTCTTGATTTTGGAGTAGTTAAAAATGCCACTCCCTCTTTTTGCAAACCAGAGCTTAAAACTTATGGAAGAAATGATCCAAGCGCAGGAGGTGTTCCCTTTAAGGAGGAGGAAATAGAAGAAGACAACAGCTATCCTAAGGTGTTTGATCTCATGAAACGTGAGACTTCAAGTTCCCTGCCTCTTATCTCCAGTCGAAGCAGGTGTGAGAAAGCACCAGATGATTCATTAACTAAGACTTTGCCAGCAACAGTGGCAACTGACAATGATTCGCATTCCGACTCCAATGCTAAGGAACAAGGGCTTTTTGAAGACATGGACTTTGATTTTGATCAAGGCTTAATAGACACGTACTCAAATCTAATTGCAGAAATTAATCCTGATGATTTTCTTGATTTGGAAGGTGAATTAACCAAGGAAGAATTAGAAGAAAGAAATCTTTCTAGTGTCAGGAAATTCTTATTAGCAGATGACGACATAGAGGAGGGGGAAATTTTAGAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
TIC20 zf-HIT

Protein Analysis

426

Amino Acids

48.53

Weight (kDa)

5.73

Isoelectric Point (pI)

55.12

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 966
Acc36I ACCTGC 2 cut(s) 11, 966
AccB1I GGYRCC 1 cut(s) 665
AccBSI CCGCTC 1 cut(s) 196
AciI CCGC 1 cut(s) 194
AclWI GGATC 1 cut(s) 845
AcsI RAATTY 2 cut(s) 1229, 1266
AcyI GRCGYC 1 cut(s) 666
AfaI GTAC 3 cut(s) 89, 163, 1127
AfiI CCNNNNNNNGG 1 cut(s) 860
AflIII ACRYGT 1 cut(s) 1122
AgsI TTSAA 5 cut(s) 460, 488, 504, 945, 1085
AjnI CCWGG 4 cut(s) 97, 476, 580, 668
AluBI AGCT 6 cut(s) 140, 148, 601, 625, 829, 906
AluI AGCT 6 cut(s) 140, 148, 601, 625, 829, 906
Alw26I GTCTC 2 cut(s) 638, 932
AlwI GGATC 1 cut(s) 845
AlwNI CAGNNNCTG 1 cut(s) 26
ApeKI GCWGC 3 cut(s) 347, 622, 712
ApoI RAATTY 2 cut(s) 1229, 1266
ArsI GACNNNNNNTTYG 4 cut(s) 1079, 1085, 1111, 1117
AseI ATTAAT 1 cut(s) 1149
Asp700I GAANNNNTTC 1 cut(s) 1213
AspLEI GCGC 2 cut(s) 668, 860
AspS9I GGNCC 1 cut(s) 584
AsuC2I CCSGG 1 cut(s) 341
AsuHPI GGTGA 3 cut(s) 317, 666, 1190
AvaII GGWCC 1 cut(s) 584
AxyI CCTNAGG 1 cut(s) 912
BanI GGYRCC 1 cut(s) 665
BbsI GAAGAC 2 cut(s) 903, 1092
BbvI GCAGC 3 cut(s) 334, 634, 724
BccI CCATC 2 cut(s) 88, 579
BcgI CGANNNNNNTGC 2 cut(s) 1043, 1077
BciT130I CCWGG 4 cut(s) 99, 478, 582, 670
BclI TGATCA 1 cut(s) 1105
BcnI CCSGG 1 cut(s) 341
BcoDI GTCTC 2 cut(s) 638, 932
BfaI CTAG 1 cut(s) 1218
BfmI CTRYAG 1 cut(s) 118
BfoI RGCGCY 1 cut(s) 669
BfuAI ACCTGC 2 cut(s) 11, 966
BisI GCNGC 3 cut(s) 348, 623, 713
BlsI GCNGC 3 cut(s) 349, 624, 714
Bme1390I CCNGG 5 cut(s) 99, 341, 478, 582, 670
Bme18I GGWCC 1 cut(s) 584
BmgT120I GGNCC 1 cut(s) 584
BmiI GGNNCC 2 cut(s) 176, 667
BmrFI CCNGG 5 cut(s) 99, 341, 478, 582, 670
BmsI GCATC 2 cut(s) 359, 480
BoxI GACNNNNGTC 1 cut(s) 429
BpiI GAAGAC 2 cut(s) 903, 1092
BpmI CTGGAG 1 cut(s) 949
Bpu10I CCTNAGC 1 cut(s) 1065
BpuEI CTTGAG 1 cut(s) 263
BpuMI CCSGG 1 cut(s) 341
BsaAI YACGTR 1 cut(s) 1125
BsaBI GATNNNNATC 1 cut(s) 1104
BsaHI GRCGYC 1 cut(s) 666
BsaJI CCNNGG 3 cut(s) 340, 587, 1188
Bsc4I CCNNNNNNNGG 1 cut(s) 860
Bse1I ACTGG 3 cut(s) 160, 354, 966
Bse21I CCTNAGG 1 cut(s) 912
Bse8I GATNNNNATC 1 cut(s) 1104
BseBI CCWGG 4 cut(s) 99, 478, 582, 670
BseDI CCNNGG 3 cut(s) 340, 587, 1188
BseGI GGATG 3 cut(s) 80, 350, 514
BseJI GATNNNNATC 1 cut(s) 1104
BseLI CCNNNNNNNGG 1 cut(s) 860
BseMII CTCAG 3 cut(s) 215, 287, 649
BseNI ACTGG 3 cut(s) 160, 354, 966
BseRI GAGGAG 3 cut(s) 27, 896, 1271
BseXI GCAGC 3 cut(s) 334, 634, 724
BshNI GGYRCC 1 cut(s) 665
BsiSI CCGG 1 cut(s) 340
BslFI GGGAC 1 cut(s) 176
BslI CCNNNNNNNGG 1 cut(s) 860
BsmAI GTCTC 2 cut(s) 638, 932
BsmFI GGGAC 1 cut(s) 176
BsmI GAATGC 1 cut(s) 1048
Bsp143I GATC 4 cut(s) 322, 850, 922, 1105
Bsp19I CCATGG 1 cut(s) 587
BspACI CCGC 1 cut(s) 194
BspCNI CTCAG 3 cut(s) 214, 286, 648
BspHI TCATGA 1 cut(s) 927
BspLI GGNNCC 2 cut(s) 176, 667
BspMI ACCTGC 2 cut(s) 11, 966
BspPI GGATC 1 cut(s) 845
BspQI GCTCTTC 1 cut(s) 612
BspT107I GGYRCC 1 cut(s) 665
BsrBI CCGCTC 1 cut(s) 196
BsrI ACTGG 3 cut(s) 160, 354, 966
BssECI CCNNGG 3 cut(s) 340, 587, 1188
BssMI GATC 4 cut(s) 322, 850, 922, 1105
BssNI GRCGYC 1 cut(s) 666
BssT1I CCWWGG 2 cut(s) 587, 1188
Bst2UI CCWGG 4 cut(s) 99, 478, 582, 670
Bst4CI ACNGT 2 cut(s) 46, 1027
Bst6I CTCTTC 3 cut(s) 57, 248, 612
BstACI GRCGYC 1 cut(s) 666
BstAPI GCANNNNNTGC 1 cut(s) 26
BstBAI YACGTR 1 cut(s) 1125
BstC8I GCNNGC 1 cut(s) 1020
BstDEI CTNAG 7 cut(s) 201, 273, 602, 635, 912, 1008, 1065
BstDSI CCRYGG 1 cut(s) 587
BstEII GGTNACC 1 cut(s) 672
BstF5I GGATG 3 cut(s) 80, 350, 514
BstH2I RGCGCY 1 cut(s) 669
BstHHI GCGC 2 cut(s) 668, 860
BstKTI GATC 4 cut(s) 325, 853, 925, 1108
BstMAI GTCTC 2 cut(s) 638, 932
BstMBI GATC 4 cut(s) 322, 850, 922, 1105
BstMWI GCNNNNNNNGC 4 cut(s) 26, 66, 129, 1028
BstNI CCWGG 4 cut(s) 99, 478, 582, 670
BstPAI GACNNNNGTC 1 cut(s) 429
BstPI GGTNACC 1 cut(s) 672
BstSCI CCNGG 5 cut(s) 97, 339, 476, 580, 668
BstSFI CTRYAG 1 cut(s) 118
BstV1I GCAGC 3 cut(s) 334, 634, 724
BstV2I GAAGAC 2 cut(s) 903, 1092
Bsu36I CCTNAGG 1 cut(s) 912
BtgI CCRYGG 1 cut(s) 587
BtsCI GGATG 3 cut(s) 80, 350, 514
BtsIMutI CAGTG 2 cut(s) 153, 1032
BveI ACCTGC 2 cut(s) 11, 966
Cac8I GCNNGC 1 cut(s) 1020
CaiI CAGNNNCTG 1 cut(s) 26
CciI TCATGA 1 cut(s) 927
CfoI GCGC 2 cut(s) 668, 860
Cfr13I GGNCC 1 cut(s) 584
CsiI ACCWGGT 1 cut(s) 580
Csp6I GTAC 3 cut(s) 88, 162, 1126
CviAII CATG 4 cut(s) 527, 588, 928, 1090
CviQI GTAC 3 cut(s) 88, 162, 1126
DdeI CTNAG 7 cut(s) 201, 273, 602, 635, 912, 1008, 1065
DinI GGCGCC 1 cut(s) 667
DpnI GATC 4 cut(s) 324, 852, 924, 1107
DpnII GATC 4 cut(s) 322, 850, 922, 1105
Eam1104I CTCTTC 3 cut(s) 57, 248, 612
EarI CTCTTC 3 cut(s) 57, 248, 612
Eco130I CCWWGG 2 cut(s) 587, 1188
Eco47I GGWCC 1 cut(s) 584
Eco81I CCTNAGG 1 cut(s) 912
Eco91I GGTNACC 1 cut(s) 672
EcoO65I GGTNACC 1 cut(s) 672
EcoRII CCWGG 4 cut(s) 97, 476, 580, 668
EcoT14I CCWWGG 2 cut(s) 587, 1188
EcoT22I ATGCAT 1 cut(s) 473
EgeI GGCGCC 1 cut(s) 667
EheI GGCGCC 1 cut(s) 667
ErhI CCWWGG 2 cut(s) 587, 1188
FaeI CATG 4 cut(s) 530, 591, 931, 1093
FaqI GGGAC 1 cut(s) 176
FatI CATG 4 cut(s) 526, 587, 927, 1089
FauI CCCGC 1 cut(s) 201
FbaI TGATCA 1 cut(s) 1105
Fnu4HI GCNGC 3 cut(s) 348, 623, 713
FokI GGATG 3 cut(s) 67, 337, 521
Fsp4HI GCNGC 3 cut(s) 348, 623, 713
FspBI CTAG 1 cut(s) 1218
GlaI GCGC 2 cut(s) 667, 859
GluI GCNGC 3 cut(s) 348, 623, 713
GsuI CTGGAG 1 cut(s) 949
HaeII RGCGCY 1 cut(s) 669
HapII CCGG 1 cut(s) 340
HhaI GCGC 2 cut(s) 668, 860
Hin1I GRCGYC 1 cut(s) 666
Hin1II CATG 4 cut(s) 530, 591, 931, 1093
Hin6I GCGC 2 cut(s) 666, 858
HinP1I GCGC 2 cut(s) 666, 858
HincII GTYRAC 1 cut(s) 720
HindII GTYRAC 1 cut(s) 720
HindIII AAGCTT 1 cut(s) 146
HinfI GANTC 6 cut(s) 266, 592, 775, 998, 1043, 1055
HpaI GTTAAC 1 cut(s) 720
HpaII CCGG 1 cut(s) 340
HphI GGTGA 3 cut(s) 317, 666, 1190
Hpy166II GTNNAC 1 cut(s) 720
Hpy188I TCNGA 5 cut(s) 204, 229, 265, 276, 1054
Hpy188III TCNNGA 5 cut(s) 779, 928, 1154, 1166, 1225
Hpy8I GTNNAC 1 cut(s) 720
HpyAV CCTTC 2 cut(s) 777, 1169
HpyCH4III ACNGT 2 cut(s) 46, 1027
HpyCH4IV ACGT 3 cut(s) 112, 934, 1124
HpyCH4V TGCA 8 cut(s) 29, 69, 297, 350, 440, 471, 819, 1142
HpyF10VI GCNNNNNNNGC 4 cut(s) 26, 66, 129, 1028
HpyF3I CTNAG 7 cut(s) 201, 273, 602, 635, 912, 1008, 1065
HpySE526I ACGT 3 cut(s) 112, 934, 1124
Hsp92I GRCGYC 1 cut(s) 666
Hsp92II CATG 4 cut(s) 530, 591, 931, 1093
HspAI GCGC 2 cut(s) 666, 858
KasI GGCGCC 1 cut(s) 665
Ksp22I TGATCA 1 cut(s) 1105
KspAI GTTAAC 1 cut(s) 720
Kzo9I GATC 4 cut(s) 322, 850, 922, 1105
LguI GCTCTTC 1 cut(s) 612
LmnI GCTCC 1 cut(s) 110
Lsp1109I GCAGC 3 cut(s) 334, 634, 724
LweI GCATC 2 cut(s) 359, 480
MabI ACCWGGT 1 cut(s) 580
MaeI CTAG 1 cut(s) 1218
MaeII ACGT 3 cut(s) 112, 934, 1124
MaeIII GTNAC 1 cut(s) 672
MalI GATC 4 cut(s) 324, 852, 924, 1107
MbiI CCGCTC 1 cut(s) 196
MboI GATC 4 cut(s) 322, 850, 922, 1105
MluCI AATT 8 cut(s) 235, 304, 1137, 1146, 1181, 1196, 1229, 1266
Mly113I GGCGCC 1 cut(s) 666
MlyI GAGTC 2 cut(s) 784, 1049
MmeI TCCRAC 2 cut(s) 669, 1077
Mph1103I ATGCAT 1 cut(s) 473
MroXI GAANNNNTTC 1 cut(s) 1213
MslI CAYNNNNRTG 1 cut(s) 679
MspA1I CMGCKG 1 cut(s) 625
MspI CCGG 1 cut(s) 340
MspR9I CCNGG 5 cut(s) 99, 341, 478, 582, 670
Mva1269I GAATGC 1 cut(s) 1048
MvaI CCWGG 4 cut(s) 99, 478, 582, 670
MwoI GCNNNNNNNGC 4 cut(s) 26, 66, 129, 1028
NarI GGCGCC 1 cut(s) 666
NciI CCSGG 1 cut(s) 341
NcoI CCATGG 1 cut(s) 587
NdeII GATC 4 cut(s) 322, 850, 922, 1105
NlaIII CATG 4 cut(s) 530, 591, 931, 1093
NlaIV GGNNCC 2 cut(s) 176, 667
NmuCI GTSAC 1 cut(s) 672
NsiI ATGCAT 1 cut(s) 473
PagI TCATGA 1 cut(s) 927
PaqCI CACCTGC 1 cut(s) 966
PciSI GCTCTTC 1 cut(s) 612
PcsI WCGNNNNNNNCGW 1 cut(s) 424
PctI GAATGC 1 cut(s) 1048
PdmI GAANNNNTTC 1 cut(s) 1213
PfeI GAWTC 4 cut(s) 266, 592, 998, 1043
PfoI TCCNGGA 1 cut(s) 476
PkrI GCNGC 3 cut(s) 349, 624, 714
PleI GAGTC 2 cut(s) 783, 1049
PluTI GGCGCC 1 cut(s) 669
PpsI GAGTC 2 cut(s) 783, 1049
Ppu21I YACGTR 1 cut(s) 1125
PshAI GACNNNNGTC 1 cut(s) 429
PshBI ATTAAT 1 cut(s) 1149
Psp6I CCWGG 4 cut(s) 97, 476, 580, 668
PspEI GGTNACC 1 cut(s) 672
PspGI CCWGG 4 cut(s) 97, 476, 580, 668
PspN4I GGNNCC 2 cut(s) 176, 667
PspPI GGNCC 1 cut(s) 584
PstNI CAGNNNCTG 1 cut(s) 26
PvuII CAGCTG 1 cut(s) 625
RsaI GTAC 3 cut(s) 89, 163, 1127
RsaNI GTAC 3 cut(s) 88, 162, 1126
RseI CAYNNNNRTG 1 cut(s) 679
SapI GCTCTTC 1 cut(s) 612
SatI GCNGC 3 cut(s) 348, 623, 713
Sau3AI GATC 4 cut(s) 322, 850, 922, 1105
Sau96I GGNCC 1 cut(s) 584
SchI GAGTC 2 cut(s) 784, 1049
ScrFI CCNGG 5 cut(s) 99, 341, 478, 582, 670
SexAI ACCWGGT 1 cut(s) 580
SfaNI GCATC 2 cut(s) 359, 480
SfcI CTRYAG 1 cut(s) 118
SfoI GGCGCC 1 cut(s) 667
SinI GGWCC 1 cut(s) 584
SmiMI CAYNNNNRTG 1 cut(s) 679
SmlI CTYRAG 1 cut(s) 242
SmoI CTYRAG 1 cut(s) 242
Sse9I AATT 8 cut(s) 235, 304, 1137, 1146, 1181, 1196, 1229, 1266
SsiI CCGC 1 cut(s) 194
SspDI GGCGCC 1 cut(s) 665
SspMI CTAG 1 cut(s) 1218
StyD4I CCNGG 5 cut(s) 97, 339, 476, 580, 668
StyI CCWWGG 2 cut(s) 587, 1188
TaaI ACNGT 2 cut(s) 46, 1027
TaiI ACGT 3 cut(s) 115, 937, 1127
TaqI TCGA 2 cut(s) 418, 970
TaqII GACCGA 1 cut(s) 441
TasI AATT 8 cut(s) 235, 304, 1137, 1146, 1181, 1196, 1229, 1266
TatI WGTACW 1 cut(s) 87
TfiI GAWTC 4 cut(s) 266, 592, 998, 1043
TscAI CASTG 2 cut(s) 160, 1032
TseFI GTSAC 1 cut(s) 672
TseI GCWGC 3 cut(s) 347, 622, 712
Tsp45I GTSAC 1 cut(s) 672
TspDTI ATGAA 5 cut(s) 488, 543, 552, 944, 990
TspGWI ACGGA 1 cut(s) 521
TspRI CASTG 2 cut(s) 160, 1032
VpaK11BI GGWCC 1 cut(s) 584
VspI ATTAAT 1 cut(s) 1149
XapI RAATTY 2 cut(s) 1229, 1266
XcmI CCANNNNNNNNNTGG 1 cut(s) 578
XmnI GAANNNNTTC 1 cut(s) 1213
XspI CTAG 1 cut(s) 1218
Zsp2I ATGCAT 1 cut(s) 473
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.