Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr2

Orthogroup ID

OG0006202

Physical Location & Seq

Genomic Coordinates Reverse (-)

24431014 .. 24433943

Gene Structure 2930 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom02g26620.5

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1242 bp

ATGGAGGAAGGAGGACGAGAAGCTGGTTCAGCGAAACCAAACCCGAAAATATGCCAAGAGTGCAAAGAGAAGGCGTCCAAGTACAAATGCCCAGGCTGCTCCGTACGCTCCTGTAGCCTTCCGTGCGTCAAGGCCCACAAGCTTCGCTCTGGCTGTACGGGCAAGAGGCCCCTAACCAACTTCGTCCCCCTCTCTCAGATGGACAATAATCAGCTCCTTTCTGACTACAATTTGCTTGAGGAAGTGAAGAGGGTTGCTGAGTCTGCTCACAGATTGAGAAATAAGTTGTGCAGATACAATAATTTCAGGCTACCCTTTTGCCTTAAAAGCCTTCGGAGTGCTGCTGCCAGTCGCAGGACGAAACTCTTATTTCTACCATGTGGAATGTCAAAAAGGGAGAAAAATCAAACTCGATATGATCAAAGGAAGAAATGCATCTCCTGGACAATTGAATGGCAATTTCATTTAACGGATGTTGTTTTAATTGACCATGAAGTAAATGAAAACAAGAACCTCTGCTCTGTTATCGAAAACCATCTAAAAGCTGGCCCATGGAATCATCACCTAAAGCTATTCTGCGAGGAACAGCTGGACTCTCTCAAGCTTTTTATTCGTAAATATCCCAAGGGCACTAGGTCACCTTTCTGTGAGTTGGATGTAAGAGTTCCAATAAGGCAGCAGTTAGCAAACTTAGTTATTTTGGAATACCCTGTCATTTATGTATTTCTCCCTTCGCACAGTCTTGATTTTGAAGTAGTTAAAAGTTCCCCTCCTACTTTCGGCAAACCAGAGCTTAGGACTTATGGAAAAAATGATTTGAGCGCAGGAGGTGTTTCCTTTAAGGAGGAGGAGATAGAAGAAGACAACATCTATCCTGTGGTCTTTGATCTCATGAAACATGAGACTTCAAGTTCCCCACCTAATATATCTAATAAAAGGAGGTGTGAGAAGCCACCCGATGATTCATTTGCTAGGCCTTTGTCTGTAACTGTGGAAACTTGCAACGATTCACATTCCAGCTCTGATGCTAAGAAGCAAGTGTTTTTTGAAGACATGGACTTTGCTTTTGATCAAGGCTTAATAGACGAGTACTCAGGTCTTATGGCAGAAATTAATCCTGATGATTTTCTTGATTTGGAAGGTGAATTTACCAAGGAAGGAGTGACAGAAAGAAATCTTTCAAGTGTCAGGAGATTCTTATTGGCAGATGACGATATAGAGGAGGGAGAAATTTTAGAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TIC20 zf-HIT

Protein Analysis

414

Amino Acids

47.27

Weight (kDa)

6.26

Isoelectric Point (pI)

58.48

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006202)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G04945 AT1G04945 AT1G04945 AT1G04945
fragaria_vesca	FvH4_5g32720
malus_domestica	MD02G1318000.v1.1 MD07G1003300.v1.1
prunus_persica	Prupe.2G005000_v2.0.a1 Prupe.2G005000_v2.0.a1 Prupe.2G005000_v2.0.a1 Prupe.2G005000_v2.0.a1 Prupe.2G005000_v2.0.a1 Prupe.2G005000_v2.0.a1
pyrus_communis	pycom02g26620 pycom07g00330
rosa_chinensis	RchiOBHm_Chr7g0230361
rosa_laevigata	RLG00000001498
rosa_multiflora	Rmu_sc0002541.1_g000034 Rmu_sc0007103.1_g000018
rosa_roxburghii	Rroxscaffold_3G00230200
rosa_rugosa	Rorug07G0260200
rosa_samantha	Rh7AG409600 Rh7AG411300 Rh7BG389400 Rh7CG429000 Rh7DG407600
rosa_wichuraiana	Rw7G034210

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcsI	RAATTY	2 cut(s)	1145, 1230
AcyI	GRCGYC	1 cut(s)	74
AfaI	GTAC	4 cut(s)	83, 105, 157, 1091
AfiI	CCNNNNNNNGG	2 cut(s)	354, 779
AgsI	TTSAA	5 cut(s)	452, 752, 909, 1049, 1182
AjnI	CCWGG	2 cut(s)	91, 440
AluBI	AGCT	9 cut(s)	23, 142, 214, 545, 571, 589, 604, 793, 1020
AluI	AGCT	9 cut(s)	23, 142, 214, 545, 571, 589, 604, 793, 1020
Alw26I	GTCTC	1 cut(s)	896
AoxI	GGCC	4 cut(s)	132, 167, 547, 974
ApeKI	GCWGC	4 cut(s)	96, 341, 344, 676
ApoI	RAATTY	2 cut(s)	1145, 1230
ArsI	GACNNNNNNTTYG	4 cut(s)	1043, 1049, 1075, 1081
AseI	ATTAAT	1 cut(s)	1113
Asp700I	GAANNNNTTC	1 cut(s)	1177
AspLEI	GCGC	1 cut(s)	824
AspS9I	GGNCC	3 cut(s)	133, 168, 548
AsuHPI	GGTGA	3 cut(s)	554, 630, 1154
BaeGI	GKGCMC	1 cut(s)	632
BbsI	GAAGAC	2 cut(s)	867, 1056
BbvI	GCAGC	4 cut(s)	83, 328, 331, 688
BccI	CCATC	2 cut(s)	193, 543
BciT130I	CCWGG	2 cut(s)	93, 442
BclI	TGATCA	2 cut(s)	418, 1069
BcoDI	GTCTC	1 cut(s)	896
BfaI	CTAG	2 cut(s)	633, 972
BfmI	CTRYAG	1 cut(s)	112
BisI	GCNGC	4 cut(s)	97, 342, 345, 677
BlsI	GCNGC	4 cut(s)	98, 343, 346, 678
BmcAI	AGTACT	1 cut(s)	1091
Bme1390I	CCNGG	2 cut(s)	93, 442
BmgT120I	GGNCC	3 cut(s)	133, 168, 548
BmiI	GGNNCC	1 cut(s)	170
BmrFI	CCNGG	2 cut(s)	93, 442
BmsI	GCATC	2 cut(s)	444, 1015
BpiI	GAAGAC	2 cut(s)	867, 1056
Bpu10I	CCTNAGC	1 cut(s)	794
BpuEI	CTTGAG	2 cut(s)	257, 584
BsaHI	GRCGYC	1 cut(s)	74
BsaJI	CCNNGG	4 cut(s)	91, 551, 624, 1152
Bsc4I	CCNNNNNNNGG	2 cut(s)	354, 779
Bse1I	ACTGG	1 cut(s)	348
BseBI	CCWGG	2 cut(s)	93, 442
BseDI	CCNNGG	4 cut(s)	91, 551, 624, 1152
BseGI	GGATG	2 cut(s)	478, 661
BseLI	CCNNNNNNNGG	2 cut(s)	354, 779
BseMII	CTCAG	3 cut(s)	209, 249, 1107
BseNI	ACTGG	1 cut(s)	348
BseRI	GAGGAG	3 cut(s)	860, 863, 1235
BseSI	GKGCMC	1 cut(s)	632
BseXI	GCAGC	4 cut(s)	83, 328, 331, 688
BsgI	GTGCAG	1 cut(s)	310
BshFI	GGCC	4 cut(s)	134, 169, 549, 976
BsiWI	CGTACG	1 cut(s)	103
BslFI	GGGAC	1 cut(s)	170
BslI	CCNNNNNNNGG	2 cut(s)	354, 779
BsmAI	GTCTC	1 cut(s)	896
BsmFI	GGGAC	1 cut(s)	170
BsnI	GGCC	4 cut(s)	134, 169, 549, 976
Bsp1286I	GDGCHC	1 cut(s)	632
Bsp143I	GATC	3 cut(s)	418, 886, 1069
Bsp19I	CCATGG	1 cut(s)	551
BspANI	GGCC	4 cut(s)	134, 169, 549, 976
BspCNI	CTCAG	3 cut(s)	208, 250, 1106
BspHI	TCATGA	1 cut(s)	891
BspLI	GGNNCC	1 cut(s)	170
BsrI	ACTGG	1 cut(s)	348
BssECI	CCNNGG	4 cut(s)	91, 551, 624, 1152
BssMI	GATC	3 cut(s)	418, 886, 1069
BssNI	GRCGYC	1 cut(s)	74
BssT1I	CCWWGG	3 cut(s)	551, 624, 1152
Bst2UI	CCWGG	2 cut(s)	93, 442
Bst4CI	ACNGT	2 cut(s)	740, 991
Bst6I	CTCTTC	1 cut(s)	242
BstACI	GRCGYC	1 cut(s)	74
BstC8I	GCNNGC	1 cut(s)	547
BstDEI	CTNAG	6 cut(s)	195, 258, 691, 794, 1029, 1093
BstDSI	CCRYGG	1 cut(s)	551
BstEII	GGTNACC	1 cut(s)	636
BstF5I	GGATG	2 cut(s)	478, 661
BstHHI	GCGC	1 cut(s)	824
BstKTI	GATC	3 cut(s)	421, 889, 1072
BstMAI	GTCTC	1 cut(s)	896
BstMBI	GATC	3 cut(s)	418, 886, 1069
BstMWI	GCNNNNNNNGC	9 cut(s)	29, 60, 96, 105, 114, 123, 159, 263, 327
BstNI	CCWGG	2 cut(s)	93, 442
BstPI	GGTNACC	1 cut(s)	636
BstSCI	CCNGG	2 cut(s)	91, 440
BstSFI	CTRYAG	1 cut(s)	112
BstSLI	GKGCMC	1 cut(s)	632
BstV1I	GCAGC	4 cut(s)	83, 328, 331, 688
BstV2I	GAAGAC	2 cut(s)	867, 1056
BsuRI	GGCC	4 cut(s)	134, 169, 549, 976
BtgI	CCRYGG	1 cut(s)	551
BtsCI	GGATG	2 cut(s)	478, 661
Cac8I	GCNNGC	1 cut(s)	547
CciI	TCATGA	1 cut(s)	891
CfoI	GCGC	1 cut(s)	824
Cfr13I	GGNCC	3 cut(s)	133, 168, 548
CseI	GACGC	2 cut(s)	63, 115
Csp6I	GTAC	4 cut(s)	82, 104, 156, 1090
CviAII	CATG	6 cut(s)	378, 491, 552, 892, 899, 1054
CviQI	GTAC	4 cut(s)	82, 104, 156, 1090
DdeI	CTNAG	6 cut(s)	195, 258, 691, 794, 1029, 1093
DpnI	GATC	3 cut(s)	420, 888, 1071
DpnII	GATC	3 cut(s)	418, 886, 1069
Eam1104I	CTCTTC	1 cut(s)	242
EarI	CTCTTC	1 cut(s)	242
Eco130I	CCWWGG	3 cut(s)	551, 624, 1152
Eco147I	AGGCCT	1 cut(s)	976
Eco91I	GGTNACC	1 cut(s)	636
EcoO109I	RGGNCCY	1 cut(s)	168
EcoO65I	GGTNACC	1 cut(s)	636
EcoRII	CCWGG	2 cut(s)	91, 440
EcoT14I	CCWWGG	3 cut(s)	551, 624, 1152
EcoT22I	ATGCAT	1 cut(s)	437
ErhI	CCWWGG	3 cut(s)	551, 624, 1152
FaeI	CATG	6 cut(s)	381, 494, 555, 895, 902, 1057
FaqI	GGGAC	1 cut(s)	170
FatI	CATG	6 cut(s)	377, 490, 551, 891, 898, 1053
FbaI	TGATCA	2 cut(s)	418, 1069
Fnu4HI	GCNGC	4 cut(s)	97, 342, 345, 677
FokI	GGATG	2 cut(s)	485, 668
Fsp4HI	GCNGC	4 cut(s)	97, 342, 345, 677
FspBI	CTAG	2 cut(s)	633, 972
GlaI	GCGC	1 cut(s)	823
GluI	GCNGC	4 cut(s)	97, 342, 345, 677
HaeIII	GGCC	4 cut(s)	134, 169, 549, 976
HgaI	GACGC	2 cut(s)	63, 115
HhaI	GCGC	1 cut(s)	824
Hin1I	GRCGYC	1 cut(s)	74
Hin1II	CATG	6 cut(s)	381, 494, 555, 895, 902, 1057
Hin6I	GCGC	1 cut(s)	822
HinP1I	GCGC	1 cut(s)	822
HindIII	AAGCTT	2 cut(s)	140, 602
HinfI	GANTC	6 cut(s)	260, 556, 593, 962, 1007, 1194
HphI	GGTGA	3 cut(s)	554, 630, 1154
Hpy188I	TCNGA	4 cut(s)	198, 223, 336, 1024
Hpy188III	TCNNGA	5 cut(s)	743, 892, 1118, 1130, 1189
HpyAV	CCTTC	6 cut(s)	64, 128, 341, 741, 1133, 1151
HpyCH4III	ACNGT	2 cut(s)	740, 991
HpyCH4V	TGCA	4 cut(s)	63, 291, 435, 1002
HpyF10VI	GCNNNNNNNGC	9 cut(s)	29, 60, 96, 105, 114, 123, 159, 263, 327
HpyF3I	CTNAG	6 cut(s)	195, 258, 691, 794, 1029, 1093
Hsp92I	GRCGYC	1 cut(s)	74
Hsp92II	CATG	6 cut(s)	381, 494, 555, 895, 902, 1057
HspAI	GCGC	1 cut(s)	822
Ksp22I	TGATCA	2 cut(s)	418, 1069
Kzo9I	GATC	3 cut(s)	418, 886, 1069
LmnI	GCTCC	3 cut(s)	104, 113, 219
Lsp1109I	GCAGC	4 cut(s)	83, 328, 331, 688
LweI	GCATC	2 cut(s)	444, 1015
MaeI	CTAG	2 cut(s)	633, 972
MaeIII	GTNAC	3 cut(s)	636, 985, 1162
MalI	GATC	3 cut(s)	420, 888, 1071
MboI	GATC	3 cut(s)	418, 886, 1069
MboII	GAAGA	5 cut(s)	259, 439, 869, 872, 1061
MfeI	CAATTG	1 cut(s)	447
MhlI	GDGCHC	1 cut(s)	632
MluCI	AATT	8 cut(s)	229, 301, 447, 458, 483, 1110, 1145, 1230
MlyI	GAGTC	2 cut(s)	269, 587
MmeI	TCCRAC	1 cut(s)	633
Mph1103I	ATGCAT	1 cut(s)	437
MroXI	GAANNNNTTC	1 cut(s)	1177
MseI	TTAA	7 cut(s)	324, 467, 482, 759, 840, 1079, 1113
MspA1I	CMGCKG	1 cut(s)	589
MspR9I	CCNGG	2 cut(s)	93, 442
MunI	CAATTG	1 cut(s)	447
MvaI	CCWGG	2 cut(s)	93, 442
MwoI	GCNNNNNNNGC	9 cut(s)	29, 60, 96, 105, 114, 123, 159, 263, 327
NcoI	CCATGG	1 cut(s)	551
NdeII	GATC	3 cut(s)	418, 886, 1069
NlaIII	CATG	6 cut(s)	381, 494, 555, 895, 902, 1057
NlaIV	GGNNCC	1 cut(s)	170
NmuCI	GTSAC	2 cut(s)	636, 1162
NsiI	ATGCAT	1 cut(s)	437
PagI	TCATGA	1 cut(s)	891
PceI	AGGCCT	1 cut(s)	976
PdmI	GAANNNNTTC	1 cut(s)	1177
PfeI	GAWTC	4 cut(s)	556, 962, 1007, 1194
Pfl23II	CGTACG	1 cut(s)	103
PfoI	TCCNGGA	1 cut(s)	440
PkrI	GCNGC	4 cut(s)	98, 343, 346, 678
PleI	GAGTC	2 cut(s)	268, 587
PpsI	GAGTC	2 cut(s)	268, 587
PshBI	ATTAAT	1 cut(s)	1113
Psp6I	CCWGG	2 cut(s)	91, 440
PspEI	GGTNACC	1 cut(s)	636
PspGI	CCWGG	2 cut(s)	91, 440
PspLI	CGTACG	1 cut(s)	103
PspN4I	GGNNCC	1 cut(s)	170
PspPI	GGNCC	3 cut(s)	133, 168, 548
PvuII	CAGCTG	1 cut(s)	589
RsaI	GTAC	4 cut(s)	83, 105, 157, 1091
RsaNI	GTAC	4 cut(s)	82, 104, 156, 1090
SaqAI	TTAA	7 cut(s)	324, 467, 482, 759, 840, 1079, 1113
SatI	GCNGC	4 cut(s)	97, 342, 345, 677
Sau3AI	GATC	3 cut(s)	418, 886, 1069
Sau96I	GGNCC	3 cut(s)	133, 168, 548
ScaI	AGTACT	1 cut(s)	1091
SchI	GAGTC	2 cut(s)	269, 587
ScrFI	CCNGG	2 cut(s)	93, 442
SduI	GDGCHC	1 cut(s)	632
SfaNI	GCATC	2 cut(s)	444, 1015
SfcI	CTRYAG	1 cut(s)	112
SmlI	CTYRAG	2 cut(s)	236, 599
SmoI	CTYRAG	2 cut(s)	236, 599
Sse9I	AATT	8 cut(s)	229, 301, 447, 458, 483, 1110, 1145, 1230
SseBI	AGGCCT	1 cut(s)	976
SspMI	CTAG	2 cut(s)	633, 972
StuI	AGGCCT	1 cut(s)	976
StyD4I	CCNGG	2 cut(s)	91, 440
StyI	CCWWGG	3 cut(s)	551, 624, 1152
TaaI	ACNGT	2 cut(s)	740, 991
TaqI	TCGA	2 cut(s)	412, 528
TasI	AATT	8 cut(s)	229, 301, 447, 458, 483, 1110, 1145, 1230
TatI	WGTACW	2 cut(s)	81, 1089
TfiI	GAWTC	4 cut(s)	556, 962, 1007, 1194
Tru1I	TTAA	7 cut(s)	324, 467, 482, 759, 840, 1079, 1113
Tru9I	TTAA	7 cut(s)	324, 467, 482, 759, 840, 1079, 1113
TseFI	GTSAC	2 cut(s)	636, 1162
TseI	GCWGC	4 cut(s)	96, 341, 344, 676
Tsp45I	GTSAC	2 cut(s)	636, 1162
TspDTI	ATGAA	5 cut(s)	452, 507, 516, 908, 954
TspGWI	ACGGA	3 cut(s)	91, 111, 485
VspI	ATTAAT	1 cut(s)	1113
XapI	RAATTY	2 cut(s)	1145, 1230
XcmI	CCANNNNNNNNNTGG	1 cut(s)	542
XmnI	GAANNNNTTC	1 cut(s)	1177
XspI	CTAG	2 cut(s)	633, 972
ZrmI	AGTACT	1 cut(s)	1091
Zsp2I	ATGCAT	1 cut(s)	437

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.