Rmu_sc0007103.1_g000018

Box C D snoRNA protein

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0007103.1
Physical Location & Seq
Reverse (-)
106053 .. 110314
4262 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0007103.1_g000018.1.cds

Sequence Viewer

Length: 1617 bp
atgttagctgaggatcttgaattcttgattcttgatctgttgatcatggtcggtcactcggtattgattataatgacggatcaccggaaactcaagaggtacaaaaatcttttgtcatggtttacaagtggtactccatcaagtgatagtgtcgatgagattagaagtgggagtagaaatgtgactgagaattctgttaatgatgtccctttaaaccattctccatctattccactagaagagtgtcataatgaaagaattgagagagaagaaagttttgatgttagttctcttgaacgtgatccaggaatacggcgtccaatatccaagtaccctttgaatgagcgtgacaatattcgaaggctgctctctctctctgctcgtgatcacaaaatggaggaggacggaggagaggcaaagacaaaggcaaaggcaaaggcaatgttatgcgaagagtgcaaagccaaagaatccaagtacaaatgtcccggttgctccatacgctcctgcagccttccctgcgttaaagcccacaagattcgtacctcttgtacgggcaagagaagccaaacccacttcgtacccatctctcagatggatgataatctcctcctttcggactacaatctgcttgaggaagtgaagagggttgcggattctgctcagagattgaggaataagttgtgcagatacaatagttttaggctgcctttttatcttaagagcctccgcggtgctgccttcagtcgcagaactaaactcttgtttttgcctactggtatgtcaaagagggacaaaaatcagacccgatacgacacaaggaagaaatgcatcacatggaccattgagtggcggtttcattctacagatgttgttctgattgaccatggagtaaatgaaaacatgaacctctcctctgttcttgaagaccatctacagcctggcccatggaatcatcagctgaggcaattctgtatagagcagctggattctctcagactttttattcgtaaacgcccaaagggcaccaggtcccctttccgtgagctagatttaagagttccaatcaggcagcagttagccaacctggatattttggaatatcctgtcatatatgtttttcttccttcacaccgtattgattttgaagtagttaaagatgtcacacgtaatgttcagaaacaagagcttcaaaattatggaagtaatgacccaggcgcagaaggtgtaccctttaaggaggaggaaatagaagaggacaacagctgccctaaggtgttagatctaaagggacatgagacttcagtttccctgcctcatatttccaacgacagcaggtgtgagaaagagataaataatgcatcagatagatctttgtctgcaacactagcagcagaaaatggttcacgctccaaggataaggaacaaggcctttttgaagacatggagtttgattttgatcaaggcttaatagacttgtattcagatcttattgctgaaattaatcctgatgattttcttgatttggatggtgaagggatagaaagaaatctttcaggtatcagggatttcttattgtcagatgatgatatagaggaaggggaaatattagaatga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

538

Amino Acids

61.84

Weight (kDa)

5.56

Isoelectric Point (pI)

60.1

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 71
AarI CACCTGC 1 cut(s) 1326
Acc36I ACCTGC 1 cut(s) 1326
AccB1I GGYRCC 1 cut(s) 1025
AccB7I CCANNNNNTGG 1 cut(s) 849
AccII CGCG 1 cut(s) 732
AciI CCGC 4 cut(s) 653, 730, 732, 853
AclWI GGATC 3 cut(s) 21, 87, 296
AcsI RAATTY 2 cut(s) 20, 190
AcuI CTGAAG 2 cut(s) 727, 1287
AcyI GRCGYC 1 cut(s) 316
AfaI GTAC 8 cut(s) 101, 133, 332, 479, 544, 553, 582, 1230
AfiI CCNNNNNNNGG 2 cut(s) 616, 849
AflII CTTAAG 1 cut(s) 719
AflIII ACRYGT 1 cut(s) 1166
AgsI TTSAA 7 cut(s) 20, 296, 340, 926, 1148, 1193, 1439
AjnI CCWGG 5 cut(s) 304, 940, 1028, 1086, 1213
AluBI AGCT 6 cut(s) 8, 961, 985, 1048, 1189, 1266
AluI AGCT 6 cut(s) 8, 961, 985, 1048, 1189, 1266
Alw26I GTCTC 1 cut(s) 1292
AlwI GGATC 3 cut(s) 21, 87, 296
AoxI GGCC 2 cut(s) 943, 1429
ApeKI GCWGC 8 cut(s) 364, 510, 706, 737, 982, 1072, 1266, 1391
ApoI RAATTY 2 cut(s) 20, 190
ArsI GACNNNNNNTTYG 4 cut(s) 990, 1022, 1433, 1465
AseI ATTAAT 1 cut(s) 1503
Asp700I GAANNNNTTC 1 cut(s) 1552
AspLEI GCGC 1 cut(s) 1220
AspS9I GGNCC 3 cut(s) 840, 944, 1032
AsuC2I CCSGG 1 cut(s) 489
AsuHPI GGTGA 2 cut(s) 74, 1544
AsuII TTCGAA 1 cut(s) 358
AvaII GGWCC 2 cut(s) 840, 1032
AxyI CCTNAGG 1 cut(s) 1272
BaeGI GKGCMC 1 cut(s) 1028
BaeI ACNNNNGTAYC 2 cut(s) 682, 715
BanI GGYRCC 1 cut(s) 1025
BarI GAAGNNNNNNTAC 2 cut(s) 918, 950
BauI CACGAG 1 cut(s) 381
BbsI GAAGAC 2 cut(s) 933, 1446
BbvCI CCTCAGC 2 cut(s) 9, 962
BbvI GCAGC 8 cut(s) 351, 522, 693, 724, 994, 1084, 1253, 1403
BccI CCATC 6 cut(s) 145, 232, 589, 593, 939, 1523
BceAI ACGGC 1 cut(s) 329
BciT130I CCWGG 5 cut(s) 306, 942, 1030, 1088, 1215
BclI TGATCA 3 cut(s) 42, 385, 1459
BcnI CCSGG 1 cut(s) 489
BcoDI GTCTC 1 cut(s) 1292
BfaI CTAG 3 cut(s) 236, 1049, 1388
BfmI CTRYAG 3 cut(s) 508, 864, 935
BfrI CTTAAG 1 cut(s) 719
BfuAI ACCTGC 1 cut(s) 1326
BglI GCCNNNNNGGC 1 cut(s) 1023
BglII AGATCT 3 cut(s) 1282, 1370, 1486
BisI GCNGC 8 cut(s) 365, 511, 707, 738, 983, 1073, 1267, 1392
BlsI GCNGC 8 cut(s) 366, 512, 708, 739, 984, 1074, 1268, 1393
Bme1390I CCNGG 6 cut(s) 306, 489, 942, 1030, 1088, 1215
Bme18I GGWCC 2 cut(s) 840, 1032
BmgT120I GGNCC 3 cut(s) 840, 944, 1032
BmiI GGNNCC 2 cut(s) 1027, 1034
BmrFI CCNGG 6 cut(s) 306, 489, 942, 1030, 1088, 1215
BmsI GCATC 2 cut(s) 840, 1370
BpiI GAAGAC 2 cut(s) 933, 1446
Bpu10I CCTNAGC 2 cut(s) 9, 962
Bpu14I TTCGAA 1 cut(s) 358
BpuEI CTTGAG 2 cut(s) 77, 653
BpuMI CCSGG 1 cut(s) 489
BsaAI YACGTR 1 cut(s) 1169
BsaBI GATNNNNATC 2 cut(s) 603, 1458
BsaHI GRCGYC 1 cut(s) 316
BsaJI CCNNGG 5 cut(s) 730, 886, 947, 1213, 1413
BsaWI WCCGGW 1 cut(s) 84
Bsc4I CCNNNNNNNGG 2 cut(s) 616, 849
Bse1I ACTGG 1 cut(s) 781
Bse21I CCTNAGG 1 cut(s) 1272
Bse3DI GCAATG 1 cut(s) 447
Bse8I GATNNNNATC 2 cut(s) 603, 1458
BseBI CCWGG 5 cut(s) 306, 942, 1030, 1088, 1215
BseDI CCNNGG 5 cut(s) 730, 886, 947, 1213, 1413
BseGI GGATG 2 cut(s) 604, 1534
BseJI GATNNNNATC 2 cut(s) 603, 1458
BseLI CCNNNNNNNGG 2 cut(s) 616, 849
BseMI GCAATG 1 cut(s) 447
BseMII CTCAG 5 cut(s) 177, 605, 677, 953, 1009
BseNI ACTGG 1 cut(s) 781
BseRI GAGGAG 5 cut(s) 413, 423, 599, 904, 1256
BseSI GKGCMC 1 cut(s) 1028
BseXI GCAGC 8 cut(s) 351, 522, 693, 724, 994, 1084, 1253, 1403
BsgI GTGCAG 1 cut(s) 706
Bsh1236I CGCG 1 cut(s) 732
BshFI GGCC 2 cut(s) 945, 1431
BshNI GGYRCC 1 cut(s) 1025
BsiSI CCGG 2 cut(s) 85, 489
BslFI GGGAC 5 cut(s) 191, 471, 806, 1018, 1305
BslI CCNNNNNNNGG 2 cut(s) 616, 849
BsmAI GTCTC 1 cut(s) 1292
BsmFI GGGAC 5 cut(s) 191, 471, 806, 1018, 1305
BsnI GGCC 2 cut(s) 945, 1431
Bsp119I TTCGAA 1 cut(s) 358
Bsp1286I GDGCHC 1 cut(s) 1028
Bsp19I CCATGG 2 cut(s) 886, 947
BspACI CCGC 4 cut(s) 653, 730, 732, 853
BspANI GGCC 2 cut(s) 945, 1431
BspCNI CTCAG 5 cut(s) 178, 604, 676, 954, 1008
BspFNI CGCG 1 cut(s) 732
BspLI GGNNCC 2 cut(s) 1027, 1034
BspMAI CTGCAG 1 cut(s) 512
BspMI ACCTGC 1 cut(s) 1326
BspPI GGATC 3 cut(s) 21, 87, 296
BspT104I TTCGAA 1 cut(s) 358
BspT107I GGYRCC 1 cut(s) 1025
BspTI CTTAAG 1 cut(s) 719
BsrDI GCAATG 1 cut(s) 447
BsrI ACTGG 1 cut(s) 781
BssECI CCNNGG 5 cut(s) 730, 886, 947, 1213, 1413
BssNI GRCGYC 1 cut(s) 316
BssSI CACGAG 1 cut(s) 381
BssT1I CCWWGG 3 cut(s) 886, 947, 1413
Bst2BI CACGAG 1 cut(s) 381
Bst2UI CCWGG 5 cut(s) 306, 942, 1030, 1088, 1215
Bst4CI ACNGT 1 cut(s) 1136
Bst6I CTCTTC 4 cut(s) 234, 447, 638, 1248
BstACI GRCGYC 1 cut(s) 316
BstAFI CTTAAG 1 cut(s) 719
BstBAI YACGTR 1 cut(s) 1169
BstBI TTCGAA 1 cut(s) 358
BstDEI CTNAG 7 cut(s) 9, 186, 591, 663, 962, 995, 1272
BstDSI CCRYGG 3 cut(s) 730, 886, 947
BstF5I GGATG 2 cut(s) 604, 1534
BstFNI CGCG 1 cut(s) 732
BstHHI GCGC 1 cut(s) 1220
BstMAI GTCTC 1 cut(s) 1292
BstMWI GCNNNNNNNGC 8 cut(s) 456, 501, 510, 519, 564, 659, 1023, 1388
BstNI CCWGG 5 cut(s) 306, 942, 1030, 1088, 1215
BstSCI CCNGG 6 cut(s) 304, 487, 940, 1028, 1086, 1213
BstSFI CTRYAG 3 cut(s) 508, 864, 935
BstSLI GKGCMC 1 cut(s) 1028
BstUI CGCG 1 cut(s) 732
BstV1I GCAGC 8 cut(s) 351, 522, 693, 724, 994, 1084, 1253, 1403
BstV2I GAAGAC 2 cut(s) 933, 1446
BstX2I RGATCY 4 cut(s) 13, 1282, 1370, 1486
BstYI RGATCY 4 cut(s) 13, 1282, 1370, 1486
Bsu36I CCTNAGG 1 cut(s) 1272
BsuRI GGCC 2 cut(s) 945, 1431
BtgI CCRYGG 3 cut(s) 730, 886, 947
BtsCI GGATG 2 cut(s) 604, 1534
BveI ACCTGC 1 cut(s) 1326
CfoI GCGC 1 cut(s) 1220
Cfr13I GGNCC 3 cut(s) 840, 944, 1032
Cfr42I CCGCGG 1 cut(s) 733
CseI GACGC 1 cut(s) 305
CsiI ACCWGGT 1 cut(s) 1028
Csp6I GTAC 8 cut(s) 100, 132, 331, 478, 543, 552, 581, 1229
CviAII CATG 8 cut(s) 46, 117, 837, 887, 904, 948, 1295, 1444
CviQI GTAC 8 cut(s) 100, 132, 331, 478, 543, 552, 581, 1229
DdeI CTNAG 7 cut(s) 9, 186, 591, 663, 962, 995, 1272
DraI TTTAAA 1 cut(s) 213
Eam1104I CTCTTC 4 cut(s) 234, 447, 638, 1248
EarI CTCTTC 4 cut(s) 234, 447, 638, 1248
Eco130I CCWWGG 3 cut(s) 886, 947, 1413
Eco147I AGGCCT 1 cut(s) 1431
Eco47I GGWCC 2 cut(s) 840, 1032
Eco57I CTGAAG 2 cut(s) 727, 1287
Eco81I CCTNAGG 1 cut(s) 1272
EcoO109I RGGNCCY 1 cut(s) 1032
EcoRI GAATTC 2 cut(s) 20, 190
EcoRII CCWGG 5 cut(s) 304, 940, 1028, 1086, 1213
EcoT14I CCWWGG 3 cut(s) 886, 947, 1413
EcoT22I ATGCAT 2 cut(s) 833, 1363
ErhI CCWWGG 3 cut(s) 886, 947, 1413
FaeI CATG 8 cut(s) 49, 120, 840, 890, 907, 951, 1298, 1447
FaqI GGGAC 5 cut(s) 191, 471, 806, 1018, 1305
FatI CATG 8 cut(s) 45, 116, 836, 886, 903, 947, 1294, 1443
FbaI TGATCA 3 cut(s) 42, 385, 1459
Fnu4HI GCNGC 8 cut(s) 365, 511, 707, 738, 983, 1073, 1267, 1392
FokI GGATG 2 cut(s) 611, 1541
Fsp4HI GCNGC 8 cut(s) 365, 511, 707, 738, 983, 1073, 1267, 1392
FspBI CTAG 3 cut(s) 236, 1049, 1388
GlaI GCGC 1 cut(s) 1219
GluI GCNGC 8 cut(s) 365, 511, 707, 738, 983, 1073, 1267, 1392
HaeIII GGCC 2 cut(s) 945, 1431
HapII CCGG 2 cut(s) 85, 489
HgaI GACGC 1 cut(s) 305
HhaI GCGC 1 cut(s) 1220
Hin1I GRCGYC 1 cut(s) 316
Hin1II CATG 8 cut(s) 49, 120, 840, 890, 907, 951, 1298, 1447
Hin6I GCGC 1 cut(s) 1218
HinP1I GCGC 1 cut(s) 1218
HinfI GANTC 6 cut(s) 28, 470, 538, 656, 952, 989
HpaII CCGG 2 cut(s) 85, 489
HphI GGTGA 2 cut(s) 74, 1544
Hpy166II GTNNAC 4 cut(s) 123, 1013, 1229, 1406
Hpy188III TCNNGA 9 cut(s) 17, 25, 32, 94, 293, 383, 923, 1508, 1520
Hpy8I GTNNAC 4 cut(s) 123, 1013, 1229, 1406
HpyAV CCTTC 7 cut(s) 354, 524, 751, 1137, 1217, 1529, 1592
HpyCH4III ACNGT 1 cut(s) 1136
HpyCH4IV ACGT 2 cut(s) 298, 1168
HpyCH4V TGCA 6 cut(s) 459, 510, 687, 831, 1361, 1382
HpyF10VI GCNNNNNNNGC 8 cut(s) 456, 501, 510, 519, 564, 659, 1023, 1388
HpyF3I CTNAG 7 cut(s) 9, 186, 591, 663, 962, 995, 1272
HpySE526I ACGT 2 cut(s) 298, 1168
Hsp92I GRCGYC 1 cut(s) 316
Hsp92II CATG 8 cut(s) 49, 120, 840, 890, 907, 951, 1298, 1447
HspAI GCGC 1 cut(s) 1218
Ksp22I TGATCA 3 cut(s) 42, 385, 1459
KspI CCGCGG 1 cut(s) 733
LmnI GCTCC 3 cut(s) 500, 509, 1415
Lsp1109I GCAGC 8 cut(s) 351, 522, 693, 724, 994, 1084, 1253, 1403
LweI GCATC 2 cut(s) 840, 1370
MabI ACCWGGT 1 cut(s) 1028
MaeI CTAG 3 cut(s) 236, 1049, 1388
MaeII ACGT 2 cut(s) 298, 1168
MaeIII GTNAC 4 cut(s) 53, 181, 347, 1162
MboII GAAGA 9 cut(s) 251, 281, 464, 655, 835, 938, 1115, 1265, 1451
MflI RGATCY 4 cut(s) 13, 1282, 1370, 1486
MhlI GDGCHC 1 cut(s) 1028
MluCI AATT 6 cut(s) 20, 190, 258, 968, 1195, 1500
MmeI TCCRAC 1 cut(s) 1350
Mph1103I ATGCAT 2 cut(s) 833, 1363
MroXI GAANNNNTTC 1 cut(s) 1552
MseI TTAA 9 cut(s) 198, 212, 525, 720, 1055, 1155, 1236, 1469, 1503
MspA1I CMGCKG 4 cut(s) 732, 961, 985, 1266
MspCI CTTAAG 1 cut(s) 719
MspI CCGG 2 cut(s) 85, 489
MspR9I CCNGG 6 cut(s) 306, 489, 942, 1030, 1088, 1215
MvaI CCWGG 5 cut(s) 306, 942, 1030, 1088, 1215
MvnI CGCG 1 cut(s) 732
MwoI GCNNNNNNNGC 8 cut(s) 456, 501, 510, 519, 564, 659, 1023, 1388
NciI CCSGG 1 cut(s) 489
NcoI CCATGG 2 cut(s) 886, 947
NlaIII CATG 8 cut(s) 49, 120, 840, 890, 907, 951, 1298, 1447
NlaIV GGNNCC 2 cut(s) 1027, 1034
NmuCI GTSAC 4 cut(s) 53, 181, 347, 1162
NsiI ATGCAT 2 cut(s) 833, 1363
NspV TTCGAA 1 cut(s) 358
PaqCI CACCTGC 1 cut(s) 1326
PceI AGGCCT 1 cut(s) 1431
PdmI GAANNNNTTC 1 cut(s) 1552
PfeI GAWTC 6 cut(s) 28, 470, 538, 656, 952, 989
PflMI CCANNNNNTGG 1 cut(s) 849
PfoI TCCNGGA 1 cut(s) 304
PkrI GCNGC 8 cut(s) 366, 512, 708, 739, 984, 1074, 1268, 1393
Ppu21I YACGTR 1 cut(s) 1169
PpuMI RGGWCCY 1 cut(s) 1032
PshBI ATTAAT 1 cut(s) 1503
PsiI TTATAA 1 cut(s) 71
Psp5II RGGWCCY 1 cut(s) 1032
Psp6I CCWGG 5 cut(s) 304, 940, 1028, 1086, 1213
PspGI CCWGG 5 cut(s) 304, 940, 1028, 1086, 1213
PspN4I GGNNCC 2 cut(s) 1027, 1034
PspPI GGNCC 3 cut(s) 840, 944, 1032
PspPPI RGGWCCY 1 cut(s) 1032
PstI CTGCAG 1 cut(s) 512
PsuI RGATCY 4 cut(s) 13, 1282, 1370, 1486
PvuII CAGCTG 3 cut(s) 961, 985, 1266
RsaI GTAC 8 cut(s) 101, 133, 332, 479, 544, 553, 582, 1230
RsaNI GTAC 8 cut(s) 100, 132, 331, 478, 543, 552, 581, 1229
SacII CCGCGG 1 cut(s) 733
SaqAI TTAA 9 cut(s) 198, 212, 525, 720, 1055, 1155, 1236, 1469, 1503
SatI GCNGC 8 cut(s) 365, 511, 707, 738, 983, 1073, 1267, 1392
Sau96I GGNCC 3 cut(s) 840, 944, 1032
ScrFI CCNGG 6 cut(s) 306, 489, 942, 1030, 1088, 1215
SduI GDGCHC 1 cut(s) 1028
SexAI ACCWGGT 1 cut(s) 1028
SfaNI GCATC 2 cut(s) 840, 1370
SfcI CTRYAG 3 cut(s) 508, 864, 935
Sfr303I CCGCGG 1 cut(s) 733
SfuI TTCGAA 1 cut(s) 358
SgrBI CCGCGG 1 cut(s) 733
SinI GGWCC 2 cut(s) 840, 1032
SmlI CTYRAG 3 cut(s) 92, 632, 719
SmoI CTYRAG 3 cut(s) 92, 632, 719
Sse9I AATT 6 cut(s) 20, 190, 258, 968, 1195, 1500
SseBI AGGCCT 1 cut(s) 1431
SsiI CCGC 4 cut(s) 653, 730, 732, 853
SspI AATATT 2 cut(s) 355, 1608
SspMI CTAG 3 cut(s) 236, 1049, 1388
StuI AGGCCT 1 cut(s) 1431
StyD4I CCNGG 6 cut(s) 304, 487, 940, 1028, 1086, 1213
StyI CCWWGG 3 cut(s) 886, 947, 1413
TaaI ACNGT 1 cut(s) 1136
TaiI ACGT 2 cut(s) 301, 1171
TaqI TCGA 2 cut(s) 153, 358
TaqII GACCGA 1 cut(s) 41
TasI AATT 6 cut(s) 20, 190, 258, 968, 1195, 1500
TatI WGTACW 1 cut(s) 477
TfiI GAWTC 6 cut(s) 28, 470, 538, 656, 952, 989
Tru1I TTAA 9 cut(s) 198, 212, 525, 720, 1055, 1155, 1236, 1469, 1503
Tru9I TTAA 9 cut(s) 198, 212, 525, 720, 1055, 1155, 1236, 1469, 1503
TseFI GTSAC 4 cut(s) 53, 181, 347, 1162
TseI GCWGC 8 cut(s) 364, 510, 706, 737, 982, 1072, 1266, 1391
Tsp45I GTSAC 4 cut(s) 53, 181, 347, 1162
TspDTI ATGAA 4 cut(s) 267, 848, 912, 920
TspGWI ACGGA 3 cut(s) 92, 420, 1031
Van91I CCANNNNNTGG 1 cut(s) 849
Vha464I CTTAAG 1 cut(s) 719
VpaK11BI GGWCC 2 cut(s) 840, 1032
VspI ATTAAT 1 cut(s) 1503
XapI RAATTY 2 cut(s) 20, 190
XcmI CCANNNNNNNNNTGG 2 cut(s) 592, 938
XmnI GAANNNNTTC 1 cut(s) 1552
XspI CTAG 3 cut(s) 236, 1049, 1388
Zsp2I ATGCAT 2 cut(s) 833, 1363
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.