Box C D snoRNA protein
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT1G04945 AT1G04945 AT1G04945 AT1G04945 |
| fragaria_vesca | FvH4_5g32720 |
| malus_domestica | MD02G1318000.v1.1 MD07G1003300.v1.1 |
| prunus_persica | Prupe.2G005000_v2.0.a1 Prupe.2G005000_v2.0.a1 Prupe.2G005000_v2.0.a1 Prupe.2G005000_v2.0.a1 Prupe.2G005000_v2.0.a1 Prupe.2G005000_v2.0.a1 |
| pyrus_communis | pycom02g26620 pycom07g00330 |
| rosa_chinensis | RchiOBHm_Chr7g0230361 |
| rosa_laevigata | RLG00000001498 |
| rosa_multiflora | Rmu_sc0002541.1_g000034 Rmu_sc0007103.1_g000018 |
| rosa_roxburghii | Rroxscaffold_3G00230200 |
| rosa_rugosa | Rorug07G0260200 |
| rosa_samantha | Rh7AG409600 Rh7AG411300 Rh7BG389400 Rh7CG429000 Rh7DG407600 |
| rosa_wichuraiana | Rw7G034210 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 71 |
| AarI | CACCTGC | 1 cut(s) | 1326 |
| Acc36I | ACCTGC | 1 cut(s) | 1326 |
| AccB1I | GGYRCC | 1 cut(s) | 1025 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 849 |
| AccII | CGCG | 1 cut(s) | 732 |
| AciI | CCGC | 4 cut(s) | 653, 730, 732, 853 |
| AclWI | GGATC | 3 cut(s) | 21, 87, 296 |
| AcsI | RAATTY | 2 cut(s) | 20, 190 |
| AcuI | CTGAAG | 2 cut(s) | 727, 1287 |
| AcyI | GRCGYC | 1 cut(s) | 316 |
| AfaI | GTAC | 8 cut(s) | 101, 133, 332, 479, 544, 553, 582, 1230 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 616, 849 |
| AflII | CTTAAG | 1 cut(s) | 719 |
| AflIII | ACRYGT | 1 cut(s) | 1166 |
| AgsI | TTSAA | 7 cut(s) | 20, 296, 340, 926, 1148, 1193, 1439 |
| AjnI | CCWGG | 5 cut(s) | 304, 940, 1028, 1086, 1213 |
| AluBI | AGCT | 6 cut(s) | 8, 961, 985, 1048, 1189, 1266 |
| AluI | AGCT | 6 cut(s) | 8, 961, 985, 1048, 1189, 1266 |
| Alw26I | GTCTC | 1 cut(s) | 1292 |
| AlwI | GGATC | 3 cut(s) | 21, 87, 296 |
| AoxI | GGCC | 2 cut(s) | 943, 1429 |
| ApeKI | GCWGC | 8 cut(s) | 364, 510, 706, 737, 982, 1072, 1266, 1391 |
| ApoI | RAATTY | 2 cut(s) | 20, 190 |
| ArsI | GACNNNNNNTTYG | 4 cut(s) | 990, 1022, 1433, 1465 |
| AseI | ATTAAT | 1 cut(s) | 1503 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 1552 |
| AspLEI | GCGC | 1 cut(s) | 1220 |
| AspS9I | GGNCC | 3 cut(s) | 840, 944, 1032 |
| AsuC2I | CCSGG | 1 cut(s) | 489 |
| AsuHPI | GGTGA | 2 cut(s) | 74, 1544 |
| AsuII | TTCGAA | 1 cut(s) | 358 |
| AvaII | GGWCC | 2 cut(s) | 840, 1032 |
| AxyI | CCTNAGG | 1 cut(s) | 1272 |
| BaeGI | GKGCMC | 1 cut(s) | 1028 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 682, 715 |
| BanI | GGYRCC | 1 cut(s) | 1025 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 918, 950 |
| BauI | CACGAG | 1 cut(s) | 381 |
| BbsI | GAAGAC | 2 cut(s) | 933, 1446 |
| BbvCI | CCTCAGC | 2 cut(s) | 9, 962 |
| BbvI | GCAGC | 8 cut(s) | 351, 522, 693, 724, 994, 1084, 1253, 1403 |
| BccI | CCATC | 6 cut(s) | 145, 232, 589, 593, 939, 1523 |
| BceAI | ACGGC | 1 cut(s) | 329 |
| BciT130I | CCWGG | 5 cut(s) | 306, 942, 1030, 1088, 1215 |
| BclI | TGATCA | 3 cut(s) | 42, 385, 1459 |
| BcnI | CCSGG | 1 cut(s) | 489 |
| BcoDI | GTCTC | 1 cut(s) | 1292 |
| BfaI | CTAG | 3 cut(s) | 236, 1049, 1388 |
| BfmI | CTRYAG | 3 cut(s) | 508, 864, 935 |
| BfrI | CTTAAG | 1 cut(s) | 719 |
| BfuAI | ACCTGC | 1 cut(s) | 1326 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 1023 |
| BglII | AGATCT | 3 cut(s) | 1282, 1370, 1486 |
| BisI | GCNGC | 8 cut(s) | 365, 511, 707, 738, 983, 1073, 1267, 1392 |
| BlsI | GCNGC | 8 cut(s) | 366, 512, 708, 739, 984, 1074, 1268, 1393 |
| Bme1390I | CCNGG | 6 cut(s) | 306, 489, 942, 1030, 1088, 1215 |
| Bme18I | GGWCC | 2 cut(s) | 840, 1032 |
| BmgT120I | GGNCC | 3 cut(s) | 840, 944, 1032 |
| BmiI | GGNNCC | 2 cut(s) | 1027, 1034 |
| BmrFI | CCNGG | 6 cut(s) | 306, 489, 942, 1030, 1088, 1215 |
| BmsI | GCATC | 2 cut(s) | 840, 1370 |
| BpiI | GAAGAC | 2 cut(s) | 933, 1446 |
| Bpu10I | CCTNAGC | 2 cut(s) | 9, 962 |
| Bpu14I | TTCGAA | 1 cut(s) | 358 |
| BpuEI | CTTGAG | 2 cut(s) | 77, 653 |
| BpuMI | CCSGG | 1 cut(s) | 489 |
| BsaAI | YACGTR | 1 cut(s) | 1169 |
| BsaBI | GATNNNNATC | 2 cut(s) | 603, 1458 |
| BsaHI | GRCGYC | 1 cut(s) | 316 |
| BsaJI | CCNNGG | 5 cut(s) | 730, 886, 947, 1213, 1413 |
| BsaWI | WCCGGW | 1 cut(s) | 84 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 616, 849 |
| Bse1I | ACTGG | 1 cut(s) | 781 |
| Bse21I | CCTNAGG | 1 cut(s) | 1272 |
| Bse3DI | GCAATG | 1 cut(s) | 447 |
| Bse8I | GATNNNNATC | 2 cut(s) | 603, 1458 |
| BseBI | CCWGG | 5 cut(s) | 306, 942, 1030, 1088, 1215 |
| BseDI | CCNNGG | 5 cut(s) | 730, 886, 947, 1213, 1413 |
| BseGI | GGATG | 2 cut(s) | 604, 1534 |
| BseJI | GATNNNNATC | 2 cut(s) | 603, 1458 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 616, 849 |
| BseMI | GCAATG | 1 cut(s) | 447 |
| BseMII | CTCAG | 5 cut(s) | 177, 605, 677, 953, 1009 |
| BseNI | ACTGG | 1 cut(s) | 781 |
| BseRI | GAGGAG | 5 cut(s) | 413, 423, 599, 904, 1256 |
| BseSI | GKGCMC | 1 cut(s) | 1028 |
| BseXI | GCAGC | 8 cut(s) | 351, 522, 693, 724, 994, 1084, 1253, 1403 |
| BsgI | GTGCAG | 1 cut(s) | 706 |
| Bsh1236I | CGCG | 1 cut(s) | 732 |
| BshFI | GGCC | 2 cut(s) | 945, 1431 |
| BshNI | GGYRCC | 1 cut(s) | 1025 |
| BsiSI | CCGG | 2 cut(s) | 85, 489 |
| BslFI | GGGAC | 5 cut(s) | 191, 471, 806, 1018, 1305 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 616, 849 |
| BsmAI | GTCTC | 1 cut(s) | 1292 |
| BsmFI | GGGAC | 5 cut(s) | 191, 471, 806, 1018, 1305 |
| BsnI | GGCC | 2 cut(s) | 945, 1431 |
| Bsp119I | TTCGAA | 1 cut(s) | 358 |
| Bsp1286I | GDGCHC | 1 cut(s) | 1028 |
| Bsp19I | CCATGG | 2 cut(s) | 886, 947 |
| BspACI | CCGC | 4 cut(s) | 653, 730, 732, 853 |
| BspANI | GGCC | 2 cut(s) | 945, 1431 |
| BspCNI | CTCAG | 5 cut(s) | 178, 604, 676, 954, 1008 |
| BspFNI | CGCG | 1 cut(s) | 732 |
| BspLI | GGNNCC | 2 cut(s) | 1027, 1034 |
| BspMAI | CTGCAG | 1 cut(s) | 512 |
| BspMI | ACCTGC | 1 cut(s) | 1326 |
| BspPI | GGATC | 3 cut(s) | 21, 87, 296 |
| BspT104I | TTCGAA | 1 cut(s) | 358 |
| BspT107I | GGYRCC | 1 cut(s) | 1025 |
| BspTI | CTTAAG | 1 cut(s) | 719 |
| BsrDI | GCAATG | 1 cut(s) | 447 |
| BsrI | ACTGG | 1 cut(s) | 781 |
| BssECI | CCNNGG | 5 cut(s) | 730, 886, 947, 1213, 1413 |
| BssNI | GRCGYC | 1 cut(s) | 316 |
| BssSI | CACGAG | 1 cut(s) | 381 |
| BssT1I | CCWWGG | 3 cut(s) | 886, 947, 1413 |
| Bst2BI | CACGAG | 1 cut(s) | 381 |
| Bst2UI | CCWGG | 5 cut(s) | 306, 942, 1030, 1088, 1215 |
| Bst4CI | ACNGT | 1 cut(s) | 1136 |
| Bst6I | CTCTTC | 4 cut(s) | 234, 447, 638, 1248 |
| BstACI | GRCGYC | 1 cut(s) | 316 |
| BstAFI | CTTAAG | 1 cut(s) | 719 |
| BstBAI | YACGTR | 1 cut(s) | 1169 |
| BstBI | TTCGAA | 1 cut(s) | 358 |
| BstDEI | CTNAG | 7 cut(s) | 9, 186, 591, 663, 962, 995, 1272 |
| BstDSI | CCRYGG | 3 cut(s) | 730, 886, 947 |
| BstF5I | GGATG | 2 cut(s) | 604, 1534 |
| BstFNI | CGCG | 1 cut(s) | 732 |
| BstHHI | GCGC | 1 cut(s) | 1220 |
| BstMAI | GTCTC | 1 cut(s) | 1292 |
| BstMWI | GCNNNNNNNGC | 8 cut(s) | 456, 501, 510, 519, 564, 659, 1023, 1388 |
| BstNI | CCWGG | 5 cut(s) | 306, 942, 1030, 1088, 1215 |
| BstSCI | CCNGG | 6 cut(s) | 304, 487, 940, 1028, 1086, 1213 |
| BstSFI | CTRYAG | 3 cut(s) | 508, 864, 935 |
| BstSLI | GKGCMC | 1 cut(s) | 1028 |
| BstUI | CGCG | 1 cut(s) | 732 |
| BstV1I | GCAGC | 8 cut(s) | 351, 522, 693, 724, 994, 1084, 1253, 1403 |
| BstV2I | GAAGAC | 2 cut(s) | 933, 1446 |
| BstX2I | RGATCY | 4 cut(s) | 13, 1282, 1370, 1486 |
| BstYI | RGATCY | 4 cut(s) | 13, 1282, 1370, 1486 |
| Bsu36I | CCTNAGG | 1 cut(s) | 1272 |
| BsuRI | GGCC | 2 cut(s) | 945, 1431 |
| BtgI | CCRYGG | 3 cut(s) | 730, 886, 947 |
| BtsCI | GGATG | 2 cut(s) | 604, 1534 |
| BveI | ACCTGC | 1 cut(s) | 1326 |
| CfoI | GCGC | 1 cut(s) | 1220 |
| Cfr13I | GGNCC | 3 cut(s) | 840, 944, 1032 |
| Cfr42I | CCGCGG | 1 cut(s) | 733 |
| CseI | GACGC | 1 cut(s) | 305 |
| CsiI | ACCWGGT | 1 cut(s) | 1028 |
| Csp6I | GTAC | 8 cut(s) | 100, 132, 331, 478, 543, 552, 581, 1229 |
| CviAII | CATG | 8 cut(s) | 46, 117, 837, 887, 904, 948, 1295, 1444 |
| CviQI | GTAC | 8 cut(s) | 100, 132, 331, 478, 543, 552, 581, 1229 |
| DdeI | CTNAG | 7 cut(s) | 9, 186, 591, 663, 962, 995, 1272 |
| DraI | TTTAAA | 1 cut(s) | 213 |
| Eam1104I | CTCTTC | 4 cut(s) | 234, 447, 638, 1248 |
| EarI | CTCTTC | 4 cut(s) | 234, 447, 638, 1248 |
| Eco130I | CCWWGG | 3 cut(s) | 886, 947, 1413 |
| Eco147I | AGGCCT | 1 cut(s) | 1431 |
| Eco47I | GGWCC | 2 cut(s) | 840, 1032 |
| Eco57I | CTGAAG | 2 cut(s) | 727, 1287 |
| Eco81I | CCTNAGG | 1 cut(s) | 1272 |
| EcoO109I | RGGNCCY | 1 cut(s) | 1032 |
| EcoRI | GAATTC | 2 cut(s) | 20, 190 |
| EcoRII | CCWGG | 5 cut(s) | 304, 940, 1028, 1086, 1213 |
| EcoT14I | CCWWGG | 3 cut(s) | 886, 947, 1413 |
| EcoT22I | ATGCAT | 2 cut(s) | 833, 1363 |
| ErhI | CCWWGG | 3 cut(s) | 886, 947, 1413 |
| FaeI | CATG | 8 cut(s) | 49, 120, 840, 890, 907, 951, 1298, 1447 |
| FaqI | GGGAC | 5 cut(s) | 191, 471, 806, 1018, 1305 |
| FatI | CATG | 8 cut(s) | 45, 116, 836, 886, 903, 947, 1294, 1443 |
| FbaI | TGATCA | 3 cut(s) | 42, 385, 1459 |
| Fnu4HI | GCNGC | 8 cut(s) | 365, 511, 707, 738, 983, 1073, 1267, 1392 |
| FokI | GGATG | 2 cut(s) | 611, 1541 |
| Fsp4HI | GCNGC | 8 cut(s) | 365, 511, 707, 738, 983, 1073, 1267, 1392 |
| FspBI | CTAG | 3 cut(s) | 236, 1049, 1388 |
| GlaI | GCGC | 1 cut(s) | 1219 |
| GluI | GCNGC | 8 cut(s) | 365, 511, 707, 738, 983, 1073, 1267, 1392 |
| HaeIII | GGCC | 2 cut(s) | 945, 1431 |
| HapII | CCGG | 2 cut(s) | 85, 489 |
| HgaI | GACGC | 1 cut(s) | 305 |
| HhaI | GCGC | 1 cut(s) | 1220 |
| Hin1I | GRCGYC | 1 cut(s) | 316 |
| Hin1II | CATG | 8 cut(s) | 49, 120, 840, 890, 907, 951, 1298, 1447 |
| Hin6I | GCGC | 1 cut(s) | 1218 |
| HinP1I | GCGC | 1 cut(s) | 1218 |
| HinfI | GANTC | 6 cut(s) | 28, 470, 538, 656, 952, 989 |
| HpaII | CCGG | 2 cut(s) | 85, 489 |
| HphI | GGTGA | 2 cut(s) | 74, 1544 |
| Hpy166II | GTNNAC | 4 cut(s) | 123, 1013, 1229, 1406 |
| Hpy188III | TCNNGA | 9 cut(s) | 17, 25, 32, 94, 293, 383, 923, 1508, 1520 |
| Hpy8I | GTNNAC | 4 cut(s) | 123, 1013, 1229, 1406 |
| HpyAV | CCTTC | 7 cut(s) | 354, 524, 751, 1137, 1217, 1529, 1592 |
| HpyCH4III | ACNGT | 1 cut(s) | 1136 |
| HpyCH4IV | ACGT | 2 cut(s) | 298, 1168 |
| HpyCH4V | TGCA | 6 cut(s) | 459, 510, 687, 831, 1361, 1382 |
| HpyF10VI | GCNNNNNNNGC | 8 cut(s) | 456, 501, 510, 519, 564, 659, 1023, 1388 |
| HpyF3I | CTNAG | 7 cut(s) | 9, 186, 591, 663, 962, 995, 1272 |
| HpySE526I | ACGT | 2 cut(s) | 298, 1168 |
| Hsp92I | GRCGYC | 1 cut(s) | 316 |
| Hsp92II | CATG | 8 cut(s) | 49, 120, 840, 890, 907, 951, 1298, 1447 |
| HspAI | GCGC | 1 cut(s) | 1218 |
| Ksp22I | TGATCA | 3 cut(s) | 42, 385, 1459 |
| KspI | CCGCGG | 1 cut(s) | 733 |
| LmnI | GCTCC | 3 cut(s) | 500, 509, 1415 |
| Lsp1109I | GCAGC | 8 cut(s) | 351, 522, 693, 724, 994, 1084, 1253, 1403 |
| LweI | GCATC | 2 cut(s) | 840, 1370 |
| MabI | ACCWGGT | 1 cut(s) | 1028 |
| MaeI | CTAG | 3 cut(s) | 236, 1049, 1388 |
| MaeII | ACGT | 2 cut(s) | 298, 1168 |
| MaeIII | GTNAC | 4 cut(s) | 53, 181, 347, 1162 |
| MboII | GAAGA | 9 cut(s) | 251, 281, 464, 655, 835, 938, 1115, 1265, 1451 |
| MflI | RGATCY | 4 cut(s) | 13, 1282, 1370, 1486 |
| MhlI | GDGCHC | 1 cut(s) | 1028 |
| MluCI | AATT | 6 cut(s) | 20, 190, 258, 968, 1195, 1500 |
| MmeI | TCCRAC | 1 cut(s) | 1350 |
| Mph1103I | ATGCAT | 2 cut(s) | 833, 1363 |
| MroXI | GAANNNNTTC | 1 cut(s) | 1552 |
| MseI | TTAA | 9 cut(s) | 198, 212, 525, 720, 1055, 1155, 1236, 1469, 1503 |
| MspA1I | CMGCKG | 4 cut(s) | 732, 961, 985, 1266 |
| MspCI | CTTAAG | 1 cut(s) | 719 |
| MspI | CCGG | 2 cut(s) | 85, 489 |
| MspR9I | CCNGG | 6 cut(s) | 306, 489, 942, 1030, 1088, 1215 |
| MvaI | CCWGG | 5 cut(s) | 306, 942, 1030, 1088, 1215 |
| MvnI | CGCG | 1 cut(s) | 732 |
| MwoI | GCNNNNNNNGC | 8 cut(s) | 456, 501, 510, 519, 564, 659, 1023, 1388 |
| NciI | CCSGG | 1 cut(s) | 489 |
| NcoI | CCATGG | 2 cut(s) | 886, 947 |
| NlaIII | CATG | 8 cut(s) | 49, 120, 840, 890, 907, 951, 1298, 1447 |
| NlaIV | GGNNCC | 2 cut(s) | 1027, 1034 |
| NmuCI | GTSAC | 4 cut(s) | 53, 181, 347, 1162 |
| NsiI | ATGCAT | 2 cut(s) | 833, 1363 |
| NspV | TTCGAA | 1 cut(s) | 358 |
| PaqCI | CACCTGC | 1 cut(s) | 1326 |
| PceI | AGGCCT | 1 cut(s) | 1431 |
| PdmI | GAANNNNTTC | 1 cut(s) | 1552 |
| PfeI | GAWTC | 6 cut(s) | 28, 470, 538, 656, 952, 989 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 849 |
| PfoI | TCCNGGA | 1 cut(s) | 304 |
| PkrI | GCNGC | 8 cut(s) | 366, 512, 708, 739, 984, 1074, 1268, 1393 |
| Ppu21I | YACGTR | 1 cut(s) | 1169 |
| PpuMI | RGGWCCY | 1 cut(s) | 1032 |
| PshBI | ATTAAT | 1 cut(s) | 1503 |
| PsiI | TTATAA | 1 cut(s) | 71 |
| Psp5II | RGGWCCY | 1 cut(s) | 1032 |
| Psp6I | CCWGG | 5 cut(s) | 304, 940, 1028, 1086, 1213 |
| PspGI | CCWGG | 5 cut(s) | 304, 940, 1028, 1086, 1213 |
| PspN4I | GGNNCC | 2 cut(s) | 1027, 1034 |
| PspPI | GGNCC | 3 cut(s) | 840, 944, 1032 |
| PspPPI | RGGWCCY | 1 cut(s) | 1032 |
| PstI | CTGCAG | 1 cut(s) | 512 |
| PsuI | RGATCY | 4 cut(s) | 13, 1282, 1370, 1486 |
| PvuII | CAGCTG | 3 cut(s) | 961, 985, 1266 |
| RsaI | GTAC | 8 cut(s) | 101, 133, 332, 479, 544, 553, 582, 1230 |
| RsaNI | GTAC | 8 cut(s) | 100, 132, 331, 478, 543, 552, 581, 1229 |
| SacII | CCGCGG | 1 cut(s) | 733 |
| SaqAI | TTAA | 9 cut(s) | 198, 212, 525, 720, 1055, 1155, 1236, 1469, 1503 |
| SatI | GCNGC | 8 cut(s) | 365, 511, 707, 738, 983, 1073, 1267, 1392 |
| Sau96I | GGNCC | 3 cut(s) | 840, 944, 1032 |
| ScrFI | CCNGG | 6 cut(s) | 306, 489, 942, 1030, 1088, 1215 |
| SduI | GDGCHC | 1 cut(s) | 1028 |
| SexAI | ACCWGGT | 1 cut(s) | 1028 |
| SfaNI | GCATC | 2 cut(s) | 840, 1370 |
| SfcI | CTRYAG | 3 cut(s) | 508, 864, 935 |
| Sfr303I | CCGCGG | 1 cut(s) | 733 |
| SfuI | TTCGAA | 1 cut(s) | 358 |
| SgrBI | CCGCGG | 1 cut(s) | 733 |
| SinI | GGWCC | 2 cut(s) | 840, 1032 |
| SmlI | CTYRAG | 3 cut(s) | 92, 632, 719 |
| SmoI | CTYRAG | 3 cut(s) | 92, 632, 719 |
| Sse9I | AATT | 6 cut(s) | 20, 190, 258, 968, 1195, 1500 |
| SseBI | AGGCCT | 1 cut(s) | 1431 |
| SsiI | CCGC | 4 cut(s) | 653, 730, 732, 853 |
| SspI | AATATT | 2 cut(s) | 355, 1608 |
| SspMI | CTAG | 3 cut(s) | 236, 1049, 1388 |
| StuI | AGGCCT | 1 cut(s) | 1431 |
| StyD4I | CCNGG | 6 cut(s) | 304, 487, 940, 1028, 1086, 1213 |
| StyI | CCWWGG | 3 cut(s) | 886, 947, 1413 |
| TaaI | ACNGT | 1 cut(s) | 1136 |
| TaiI | ACGT | 2 cut(s) | 301, 1171 |
| TaqI | TCGA | 2 cut(s) | 153, 358 |
| TaqII | GACCGA | 1 cut(s) | 41 |
| TasI | AATT | 6 cut(s) | 20, 190, 258, 968, 1195, 1500 |
| TatI | WGTACW | 1 cut(s) | 477 |
| TfiI | GAWTC | 6 cut(s) | 28, 470, 538, 656, 952, 989 |
| Tru1I | TTAA | 9 cut(s) | 198, 212, 525, 720, 1055, 1155, 1236, 1469, 1503 |
| Tru9I | TTAA | 9 cut(s) | 198, 212, 525, 720, 1055, 1155, 1236, 1469, 1503 |
| TseFI | GTSAC | 4 cut(s) | 53, 181, 347, 1162 |
| TseI | GCWGC | 8 cut(s) | 364, 510, 706, 737, 982, 1072, 1266, 1391 |
| Tsp45I | GTSAC | 4 cut(s) | 53, 181, 347, 1162 |
| TspDTI | ATGAA | 4 cut(s) | 267, 848, 912, 920 |
| TspGWI | ACGGA | 3 cut(s) | 92, 420, 1031 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 849 |
| Vha464I | CTTAAG | 1 cut(s) | 719 |
| VpaK11BI | GGWCC | 2 cut(s) | 840, 1032 |
| VspI | ATTAAT | 1 cut(s) | 1503 |
| XapI | RAATTY | 2 cut(s) | 20, 190 |
| XcmI | CCANNNNNNNNNTGG | 2 cut(s) | 592, 938 |
| XmnI | GAANNNNTTC | 1 cut(s) | 1552 |
| XspI | CTAG | 3 cut(s) | 236, 1049, 1388 |
| Zsp2I | ATGCAT | 2 cut(s) | 833, 1363 |