FvH4_5g32720

Box C D snoRNA protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb5
OG0006202
Physical Location & Seq
Forward (+)
23625816 .. 23628555
2740 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_5g32720.t1

Sequence Viewer

Length: 1221 bp
ATGGCGGAGGATGGCGAAGAACCAAAGGCAAAGGCGAAGGAAGTGTTATGCGAAGAGTGCAAAGCCAAACCCTCCAAGTACAAATGCCCCGGTTGCTCCATCCGCTCCTGCAGCCTCCCCTGCGTCAAAGCTCACAAGTCTCGCACCTCTTGTTCCGGCAAGAGGAGCCAAACCCACTTCGTCCCCATCTCCCAGATGGACGATAATCTCCTCCTCTCCGACTACAGTCTGCTTGAGGAAGTGAAGAGGGTTGCTGATTCTGCTCAGAGGTTGAGAAACAAGCTGTGCAAATATAATCACTTCAGGCTGCCCTTTTTTCTTAAGTGCCTCCGCAATGCTGCTTACAGCCGCAGAACAAAGCTCTTGTTTCTGCCTCCTGGGATGTCTAAAAGGGACACTAATCAGACCCGATACGATACGAGGAAAAAATGCATCACTTGGACGATTGAGTGGCAGTTTCATTCGACTGACGTTGTTCTAATTGACCATGGAGTAAATGAATACATGAACCTCTCTTCTGTTCTTGAAGACCATTTACAGCCTGGGCCGTGGAATCATCAGCTGAGGCCATTCTGTACAGAGCAGCTGGATGGTCTCAAACTTTTCATCCGTACACGGCCAAAGGGTACCAGGTCACCTTACCGTAAGTTAGATTTGAGAATTCCAATCAGGCAGCAATTAGCCAACCTGGATATTTTGGAATACCCTGTCATATATGTTTTTCTTCCTTCACACAGTATTGATTTTGAAGTAGTTAAAGATGTCACTCGTAATGTTCACAAACAAGAGATTCAGAATTATGGAAGCATTGACCCAAGTGCAGGAGGTGTGCCTTTTAAGGAGGAGGAAATAGAAGAGGACAACAGCTGCCCTAAGGTGTTAGATCTAATGGGACATGAGACTTCAGTTTCGCTGCCTCATCCCAACAACAGCAGGTGTGAAAAAGAAATAATTAATTCATCAGATAAAGCTTTGCCTGCAACAATAGCAGCAGAAATTGGTTCACGTTCCAGCTCCAAGGATAAGGAAAAAGGACTTTTTGAAGACATGGAGTTTGATTTTGATCAAGGCTTAATAGACTCTTATTCAGATCTTATTGCTGAAATTAATCCTGATGATTTTCTTGATTTGGATGGTGAAGGGATAGATAGAAATCTTTCAGGTATCAGGGATTTCTTATTATCAGATGATGACATAGAGGAAGGGCAAATATTAGAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
TIC20 zf-HIT

Protein Analysis

407

Amino Acids

46.36

Weight (kDa)

5.59

Isoelectric Point (pI)

57.01

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-HIT PF04438 15 - 43 2.4e-08 HIT zinc finger
BCD1 PF25790 108 - 251 2.2e-50 BCD1 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 924
Acc36I ACCTGC 1 cut(s) 924
Acc65I GGTACC 1 cut(s) 626
AccB1I GGYRCC 1 cut(s) 626
AccBSI CCGCTC 1 cut(s) 105
AciI CCGC 4 cut(s) 5, 103, 331, 349
AcoI YGGCCR 1 cut(s) 617
AcsI RAATTY 1 cut(s) 660
AcuI CTGAAG 2 cut(s) 286, 888
AfaI GTAC 4 cut(s) 80, 577, 613, 628
AfiI CCNNNNNNNGG 2 cut(s) 162, 821
AflII CTTAAG 1 cut(s) 320
AgsI TTSAA 3 cut(s) 527, 749, 1043
AjnI CCWGG 4 cut(s) 376, 541, 629, 687
AluBI AGCT 8 cut(s) 131, 283, 361, 562, 586, 867, 971, 1014
AluI AGCT 8 cut(s) 131, 283, 361, 562, 586, 867, 971, 1014
Alw26I GTCTC 3 cut(s) 144, 599, 893
AoxI GGCC 3 cut(s) 545, 566, 617
ApeKI GCWGC 8 cut(s) 111, 307, 338, 583, 673, 867, 913, 989
ApoI RAATTY 1 cut(s) 660
ArsI GACNNNNNNTTYG 4 cut(s) 892, 924, 1037, 1069
AseI ATTAAT 2 cut(s) 954, 1107
Asp700I GAANNNNTTC 1 cut(s) 1156
Asp718I GGTACC 1 cut(s) 626
AspS9I GGNCC 1 cut(s) 545
AsuC2I CCSGG 1 cut(s) 90
AsuHPI GGTGA 2 cut(s) 627, 1148
AxyI CCTNAGG 1 cut(s) 873
BanI GGYRCC 1 cut(s) 626
BarI GAAGNNNNNNTAC 2 cut(s) 519, 551
BbsI GAAGAC 2 cut(s) 534, 1050
BbvCI CCTCAGC 1 cut(s) 563
BbvI GCAGC 8 cut(s) 123, 294, 325, 595, 685, 854, 900, 1001
BccI CCATC 6 cut(s) 5, 107, 190, 194, 584, 1127
BceAI ACGGC 2 cut(s) 532, 632
BciT130I CCWGG 4 cut(s) 378, 543, 631, 689
BclI TGATCA 1 cut(s) 1063
BcnI CCSGG 1 cut(s) 90
BcoDI GTCTC 3 cut(s) 144, 599, 893
BfmI CTRYAG 2 cut(s) 109, 223
BfrI CTTAAG 1 cut(s) 320
BfuAI ACCTGC 1 cut(s) 924
BglII AGATCT 2 cut(s) 883, 1090
BisI GCNGC 9 cut(s) 112, 308, 339, 349, 584, 674, 868, 914, 990
BlsI GCNGC 9 cut(s) 113, 309, 340, 350, 585, 675, 869, 915, 991
Bme1390I CCNGG 5 cut(s) 90, 378, 543, 631, 689
BmgT120I GGNCC 1 cut(s) 545
BmiI GGNNCC 2 cut(s) 167, 628
BmrFI CCNGG 5 cut(s) 90, 378, 543, 631, 689
BmsI GCATC 1 cut(s) 441
BoxI GACNNNNGTC 1 cut(s) 225
BpiI GAAGAC 2 cut(s) 534, 1050
Bpu10I CCTNAGC 1 cut(s) 563
BpuEI CTTGAG 1 cut(s) 254
BpuMI CCSGG 1 cut(s) 90
BsaBI GATNNNNATC 2 cut(s) 1062, 1152
BsaI GGTCTC 1 cut(s) 599
BsaJI CCNNGG 6 cut(s) 88, 377, 487, 542, 548, 1017
Bsc4I CCNNNNNNNGG 2 cut(s) 162, 821
Bse21I CCTNAGG 1 cut(s) 873
Bse3DI GCAATG 1 cut(s) 340
Bse8I GATNNNNATC 2 cut(s) 1062, 1152
BseBI CCWGG 4 cut(s) 378, 543, 631, 689
BseDI CCNNGG 6 cut(s) 88, 377, 487, 542, 548, 1017
BseGI GGATG 7 cut(s) 16, 99, 387, 595, 606, 919, 1138
BseJI GATNNNNATC 2 cut(s) 1062, 1152
BseLI CCNNNNNNNGG 2 cut(s) 162, 821
BseMI GCAATG 1 cut(s) 340
BseMII CTCAG 2 cut(s) 278, 554
BseRI GAGGAG 4 cut(s) 178, 200, 203, 857
BseXI GCAGC 8 cut(s) 123, 294, 325, 595, 685, 854, 900, 1001
BsgI GTGCAG 1 cut(s) 840
BshFI GGCC 3 cut(s) 547, 568, 619
BshNI GGYRCC 1 cut(s) 626
BsiSI CCGG 2 cut(s) 90, 156
BslFI GGGAC 3 cut(s) 167, 407, 906
BslI CCNNNNNNNGG 2 cut(s) 162, 821
BsmAI GTCTC 3 cut(s) 144, 599, 893
BsmFI GGGAC 3 cut(s) 167, 407, 906
BsnI GGCC 3 cut(s) 547, 568, 619
Bso31I GGTCTC 1 cut(s) 599
Bsp1407I TGTACA 1 cut(s) 575
Bsp143I GATC 3 cut(s) 883, 1063, 1090
Bsp19I CCATGG 1 cut(s) 487
BspACI CCGC 4 cut(s) 5, 103, 331, 349
BspANI GGCC 3 cut(s) 547, 568, 619
BspCNI CTCAG 2 cut(s) 277, 555
BspLI GGNNCC 2 cut(s) 167, 628
BspMAI CTGCAG 1 cut(s) 113
BspMI ACCTGC 1 cut(s) 924
BspT107I GGYRCC 1 cut(s) 626
BspTI CTTAAG 1 cut(s) 320
BspTNI GGTCTC 1 cut(s) 599
BsrBI CCGCTC 1 cut(s) 105
BsrDI GCAATG 1 cut(s) 340
BsrGI TGTACA 1 cut(s) 575
BssECI CCNNGG 6 cut(s) 88, 377, 487, 542, 548, 1017
BssMI GATC 3 cut(s) 883, 1063, 1090
BssT1I CCWWGG 2 cut(s) 487, 1017
Bst2UI CCWGG 4 cut(s) 378, 543, 631, 689
Bst4CI ACNGT 3 cut(s) 227, 644, 737
Bst6I CTCTTC 4 cut(s) 48, 239, 520, 849
BstAFI CTTAAG 1 cut(s) 320
BstAUI TGTACA 1 cut(s) 575
BstC8I GCNNGC 1 cut(s) 978
BstDEI CTNAG 3 cut(s) 264, 563, 873
BstDSI CCRYGG 2 cut(s) 487, 548
BstEII GGTNACC 1 cut(s) 633
BstF5I GGATG 7 cut(s) 16, 99, 387, 595, 606, 919, 1138
BstKTI GATC 3 cut(s) 886, 1066, 1093
BstMAI GTCTC 3 cut(s) 144, 599, 893
BstMBI GATC 3 cut(s) 883, 1063, 1090
BstMWI GCNNNNNNNGC 9 cut(s) 57, 93, 102, 111, 120, 165, 260, 977, 986
BstNI CCWGG 4 cut(s) 378, 543, 631, 689
BstPAI GACNNNNGTC 1 cut(s) 225
BstPI GGTNACC 1 cut(s) 633
BstSCI CCNGG 5 cut(s) 88, 376, 541, 629, 687
BstSFI CTRYAG 2 cut(s) 109, 223
BstV1I GCAGC 8 cut(s) 123, 294, 325, 595, 685, 854, 900, 1001
BstV2I GAAGAC 2 cut(s) 534, 1050
BstX2I RGATCY 2 cut(s) 883, 1090
BstYI RGATCY 2 cut(s) 883, 1090
Bsu36I CCTNAGG 1 cut(s) 873
BsuRI GGCC 3 cut(s) 547, 568, 619
BtgI CCRYGG 2 cut(s) 487, 548
BtsCI GGATG 7 cut(s) 16, 99, 387, 595, 606, 919, 1138
BveI ACCTGC 1 cut(s) 924
Cac8I GCNNGC 1 cut(s) 978
Cfr13I GGNCC 1 cut(s) 545
CseI GACGC 1 cut(s) 112
CsiI ACCWGGT 1 cut(s) 629
Csp6I GTAC 4 cut(s) 79, 576, 612, 627
CviAII CATG 4 cut(s) 488, 505, 896, 1048
CviQI GTAC 4 cut(s) 79, 576, 612, 627
DdeI CTNAG 3 cut(s) 264, 563, 873
DpnI GATC 3 cut(s) 885, 1065, 1092
DpnII GATC 3 cut(s) 883, 1063, 1090
EaeI YGGCCR 1 cut(s) 617
Eam1104I CTCTTC 4 cut(s) 48, 239, 520, 849
EarI CTCTTC 4 cut(s) 48, 239, 520, 849
EciI GGCGGA 1 cut(s) 20
Eco130I CCWWGG 2 cut(s) 487, 1017
Eco31I GGTCTC 1 cut(s) 599
Eco57I CTGAAG 2 cut(s) 286, 888
Eco81I CCTNAGG 1 cut(s) 873
Eco91I GGTNACC 1 cut(s) 633
EcoO65I GGTNACC 1 cut(s) 633
EcoRI GAATTC 1 cut(s) 660
EcoRII CCWGG 4 cut(s) 376, 541, 629, 687
EcoT14I CCWWGG 2 cut(s) 487, 1017
EcoT22I ATGCAT 1 cut(s) 434
ErhI CCWWGG 2 cut(s) 487, 1017
FaeI CATG 4 cut(s) 491, 508, 899, 1051
FaqI GGGAC 3 cut(s) 167, 407, 906
FatI CATG 4 cut(s) 487, 504, 895, 1047
FbaI TGATCA 1 cut(s) 1063
Fnu4HI GCNGC 9 cut(s) 112, 308, 339, 349, 584, 674, 868, 914, 990
FokI GGATG 7 cut(s) 23, 86, 394, 593, 602, 906, 1145
Fsp4HI GCNGC 9 cut(s) 112, 308, 339, 349, 584, 674, 868, 914, 990
GluI GCNGC 9 cut(s) 112, 308, 339, 349, 584, 674, 868, 914, 990
HaeIII GGCC 3 cut(s) 547, 568, 619
HapII CCGG 2 cut(s) 90, 156
HgaI GACGC 1 cut(s) 112
Hin1II CATG 4 cut(s) 491, 508, 899, 1051
HindIII AAGCTT 1 cut(s) 969
HinfI GANTC 4 cut(s) 257, 553, 790, 1079
HpaII CCGG 2 cut(s) 90, 156
HphI GGTGA 2 cut(s) 627, 1148
Hpy166II GTNNAC 3 cut(s) 614, 778, 1004
Hpy188I TCNGA 7 cut(s) 220, 267, 405, 795, 964, 1090, 1186
Hpy188III TCNNGA 3 cut(s) 524, 1112, 1124
Hpy8I GTNNAC 3 cut(s) 614, 778, 1004
HpyAV CCTTC 4 cut(s) 31, 738, 1133, 1196
HpyCH4III ACNGT 3 cut(s) 227, 644, 737
HpyCH4IV ACGT 2 cut(s) 471, 1006
HpyCH4V TGCA 6 cut(s) 60, 111, 288, 432, 821, 980
HpyF10VI GCNNNNNNNGC 9 cut(s) 57, 93, 102, 111, 120, 165, 260, 977, 986
HpyF3I CTNAG 3 cut(s) 264, 563, 873
HpySE526I ACGT 2 cut(s) 471, 1006
Hsp92II CATG 4 cut(s) 491, 508, 899, 1051
KpnI GGTACC 1 cut(s) 630
Ksp22I TGATCA 1 cut(s) 1063
Kzo9I GATC 3 cut(s) 883, 1063, 1090
LmnI GCTCC 4 cut(s) 101, 110, 165, 1019
Lsp1109I GCAGC 8 cut(s) 123, 294, 325, 595, 685, 854, 900, 1001
LweI GCATC 1 cut(s) 441
MabI ACCWGGT 1 cut(s) 629
MaeII ACGT 2 cut(s) 471, 1006
MaeIII GTNAC 2 cut(s) 633, 763
MalI GATC 3 cut(s) 885, 1065, 1092
MbiI CCGCTC 1 cut(s) 105
MboI GATC 3 cut(s) 883, 1063, 1090
MboII GAAGA 8 cut(s) 29, 65, 256, 507, 539, 716, 866, 1055
MflI RGATCY 2 cut(s) 883, 1090
MluCI AATT 8 cut(s) 480, 660, 677, 796, 951, 955, 996, 1104
MlyI GAGTC 1 cut(s) 1073
MmeI TCCRAC 1 cut(s) 243
Mph1103I ATGCAT 1 cut(s) 434
MroXI GAANNNNTTC 1 cut(s) 1156
MseI TTAA 6 cut(s) 321, 756, 837, 954, 1073, 1107
MspA1I CMGCKG 3 cut(s) 562, 586, 867
MspCI CTTAAG 1 cut(s) 320
MspI CCGG 2 cut(s) 90, 156
MspR9I CCNGG 5 cut(s) 90, 378, 543, 631, 689
MvaI CCWGG 4 cut(s) 378, 543, 631, 689
MwoI GCNNNNNNNGC 9 cut(s) 57, 93, 102, 111, 120, 165, 260, 977, 986
NciI CCSGG 1 cut(s) 90
NcoI CCATGG 1 cut(s) 487
NdeII GATC 3 cut(s) 883, 1063, 1090
NlaIII CATG 4 cut(s) 491, 508, 899, 1051
NlaIV GGNNCC 2 cut(s) 167, 628
NmuCI GTSAC 2 cut(s) 633, 763
NsiI ATGCAT 1 cut(s) 434
PaqCI CACCTGC 1 cut(s) 924
PdmI GAANNNNTTC 1 cut(s) 1156
PfeI GAWTC 3 cut(s) 257, 553, 790
PkrI GCNGC 9 cut(s) 113, 309, 340, 350, 585, 675, 869, 915, 991
PleI GAGTC 1 cut(s) 1073
PpsI GAGTC 1 cut(s) 1073
PshAI GACNNNNGTC 1 cut(s) 225
PshBI ATTAAT 2 cut(s) 954, 1107
Psp6I CCWGG 4 cut(s) 376, 541, 629, 687
PspEI GGTNACC 1 cut(s) 633
PspGI CCWGG 4 cut(s) 376, 541, 629, 687
PspN4I GGNNCC 2 cut(s) 167, 628
PspPI GGNCC 1 cut(s) 545
PstI CTGCAG 1 cut(s) 113
PsuI RGATCY 2 cut(s) 883, 1090
PvuII CAGCTG 3 cut(s) 562, 586, 867
RsaI GTAC 4 cut(s) 80, 577, 613, 628
RsaNI GTAC 4 cut(s) 79, 576, 612, 627
SaqAI TTAA 6 cut(s) 321, 756, 837, 954, 1073, 1107
SatI GCNGC 9 cut(s) 112, 308, 339, 349, 584, 674, 868, 914, 990
Sau3AI GATC 3 cut(s) 883, 1063, 1090
Sau96I GGNCC 1 cut(s) 545
SchI GAGTC 1 cut(s) 1073
ScrFI CCNGG 5 cut(s) 90, 378, 543, 631, 689
SexAI ACCWGGT 1 cut(s) 629
SfaNI GCATC 1 cut(s) 441
SfcI CTRYAG 2 cut(s) 109, 223
SmlI CTYRAG 2 cut(s) 233, 320
SmoI CTYRAG 2 cut(s) 233, 320
Sse9I AATT 8 cut(s) 480, 660, 677, 796, 951, 955, 996, 1104
SsiI CCGC 4 cut(s) 5, 103, 331, 349
SspI AATATT 1 cut(s) 1212
StyD4I CCNGG 5 cut(s) 88, 376, 541, 629, 687
StyI CCWWGG 2 cut(s) 487, 1017
TaaI ACNGT 3 cut(s) 227, 644, 737
TaiI ACGT 2 cut(s) 474, 1009
TaqI TCGA 1 cut(s) 464
TasI AATT 8 cut(s) 480, 660, 677, 796, 951, 955, 996, 1104
TatI WGTACW 2 cut(s) 78, 575
TauI GCSGC 1 cut(s) 351
TfiI GAWTC 3 cut(s) 257, 553, 790
Tru1I TTAA 6 cut(s) 321, 756, 837, 954, 1073, 1107
Tru9I TTAA 6 cut(s) 321, 756, 837, 954, 1073, 1107
TseFI GTSAC 2 cut(s) 633, 763
TseI GCWGC 8 cut(s) 111, 307, 338, 583, 673, 867, 913, 989
Tsp45I GTSAC 2 cut(s) 633, 763
TspDTI ATGAA 5 cut(s) 449, 513, 521, 595, 948
TspGWI ACGGA 1 cut(s) 599
Vha464I CTTAAG 1 cut(s) 320
VspI ATTAAT 2 cut(s) 954, 1107
XapI RAATTY 1 cut(s) 660
XcmI CCANNNNNNNNNTGG 2 cut(s) 193, 539
XmnI GAANNNNTTC 1 cut(s) 1156
Zsp2I ATGCAT 1 cut(s) 434
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.