Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000003

Orthogroup ID

OG0006202

Physical Location & Seq

Genomic Coordinates Reverse (-)

14851318 .. 14854038

Gene Structure 2721 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_3G00230200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1221 bp

ATGGAGGACGGAGGAGAAGCAAAGGCAAAGGCAAAGCCAATGTTATGTGAAGAGTGCAAAGCCAAAGAATCCAAGTACAAATGTCCCGGTTGCTCCATACGCTCCTGCAGCCTTCCCTGCGTTAAAGCCCACAAGATTCGTACCTCTTGTACGGGCAAGAGAAGCCACACCCACTTCGTACCCATCTCTCAGATGGACGATAATCTCCTCCTTTCTGACTACAATCTACTTGAGGAAGTGAAGAGGGTTGCTGATTCTGCTCAGAGATTGAGGAATAAGTTGTGCAGATACAATAGTTTTAGGCTGCCCTTTCATCTTAAGAGCCTCCGCGGTGCTGCTTTCAGCCGCAGAACTAAACTCTTGTTTTTGCCTACTGGTATGTCAAAGAGGGACAAAAATCAGACCCGATACGACACAAGGAAGAAATGCATCACATGGACCATTGAGTGGCGGTTTCATTCAACAGATGTTGTTCTAATTGACCATGGAGTAAATGAAAACATGAACCTCTCCTCTGTTCTTGAAGACCATCTACAGCCTGGCCCATGGAATCATAAGCTGAGGCAATTCTGTATAGAGCAGCTGGATTGTCTCAAACTTTTTATTCGTAAACGCCCAAAGGGCACCAGGTCCCCTTTCCGTGAGTTAGATTTAAGAGTTCCAATCAGGCAGCAGTTAGCCAACCTGGATATTTTGGAATACCCTGTCATATATGTTTTTCTTCCTTCACACAGTATTGATTTTGAAGTAGTTAAAGATGTCACACGTAATGTTCACAAACAAGAGCTTCAAAATTATGGAAGTAATGACCCAGGTGCAGGAGGTGTGCCCTTTAAGGAGGAGGAAATAGAAGAGGACAACAGCTGCCCTAAGGTGTTAGATCTAAAGGGACATGAGACTTCAGTTTCCCTGCCTCATATTTCCAACAACAGCAGGTGTGAGCAAGGGATAAATAATGCATCAGATAGATCTTTGTCTGCAACAATAGCAGCAGAAAATGGTTCACATTCCTGCTCCAAGGATAAGGAACAAGGACTTTTTGAAGACATGGAGTTTGATTTTGATCAAGGCTTAATAGATTCGTATTCCGATCTTATTGCTGAAATTAATCCCGATGATTTTCTGGATTTGGATGGTGAAGGGATAGAAAGAAATCTTTCAGGTATCAGGGGTTTCTTATTATCAGATGATGATATAGAGGAAGGGGAAATATTAGAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TIC20 zf-HIT

Protein Analysis

406

Amino Acids

46.25

Weight (kDa)

5.87

Isoelectric Point (pI)

54.59

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-HIT	PF04438	14 - 42	3.4e-08	HIT zinc finger
BCD1	PF25790	107 - 250	4.5e-50	BCD1 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006202)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G04945 AT1G04945 AT1G04945 AT1G04945
fragaria_vesca	FvH4_5g32720
malus_domestica	MD02G1318000.v1.1 MD07G1003300.v1.1
prunus_persica	Prupe.2G005000_v2.0.a1 Prupe.2G005000_v2.0.a1 Prupe.2G005000_v2.0.a1 Prupe.2G005000_v2.0.a1 Prupe.2G005000_v2.0.a1 Prupe.2G005000_v2.0.a1
pyrus_communis	pycom02g26620 pycom07g00330
rosa_chinensis	RchiOBHm_Chr7g0230361
rosa_laevigata	RLG00000001498
rosa_multiflora	Rmu_sc0002541.1_g000034 Rmu_sc0007103.1_g000018
rosa_roxburghii	Rroxscaffold_3G00230200
rosa_rugosa	Rorug07G0260200
rosa_samantha	Rh7AG409600 Rh7AG411300 Rh7BG389400 Rh7CG429000 Rh7DG407600
rosa_wichuraiana	Rw7G034210

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	924
Acc36I	ACCTGC	1 cut(s)	924
AccB1I	GGYRCC	1 cut(s)	623
AccB7I	CCANNNNNTGG	1 cut(s)	447
AccII	CGCG	1 cut(s)	330
AciI	CCGC	4 cut(s)	328, 330, 346, 451
AcuI	CTGAAG	1 cut(s)	885
AfaI	GTAC	4 cut(s)	77, 142, 151, 180
AfiI	CCNNNNNNNGG	2 cut(s)	447, 818
AflII	CTTAAG	1 cut(s)	317
AflIII	ACRYGT	1 cut(s)	764
AgsI	TTSAA	5 cut(s)	462, 524, 746, 791, 1043
AjnI	CCWGG	4 cut(s)	538, 626, 684, 811
AluBI	AGCT	4 cut(s)	559, 583, 787, 864
AluI	AGCT	4 cut(s)	559, 583, 787, 864
Alw26I	GTCTC	2 cut(s)	596, 890
AoxI	GGCC	1 cut(s)	541
ApeKI	GCWGC	7 cut(s)	108, 304, 335, 580, 670, 864, 989
ArsI	GACNNNNNNTTYG	2 cut(s)	1037, 1069
AseI	ATTAAT	1 cut(s)	1107
Asp700I	GAANNNNTTC	1 cut(s)	1156
AspS9I	GGNCC	3 cut(s)	438, 542, 630
AsuC2I	CCSGG	1 cut(s)	87
AsuHPI	GGTGA	1 cut(s)	1148
AvaII	GGWCC	2 cut(s)	438, 630
AxyI	CCTNAGG	1 cut(s)	870
BaeGI	GKGCMC	2 cut(s)	626, 831
BaeI	ACNNNNGTAYC	2 cut(s)	280, 313
BanI	GGYRCC	1 cut(s)	623
BarI	GAAGNNNNNNTAC	2 cut(s)	516, 548
BbsI	GAAGAC	2 cut(s)	531, 1050
BbvCI	CCTCAGC	1 cut(s)	560
BbvI	GCAGC	7 cut(s)	120, 291, 322, 592, 682, 851, 1001
BccI	CCATC	4 cut(s)	187, 191, 537, 1127
BcgI	CGANNNNNNTGC	2 cut(s)	1079, 1113
BciT130I	CCWGG	4 cut(s)	540, 628, 686, 813
BclI	TGATCA	1 cut(s)	1063
BcnI	CCSGG	1 cut(s)	87
BcoDI	GTCTC	2 cut(s)	596, 890
BfmI	CTRYAG	2 cut(s)	106, 533
BfrI	CTTAAG	1 cut(s)	317
BfuAI	ACCTGC	1 cut(s)	924
BglI	GCCNNNNNGGC	1 cut(s)	621
BglII	AGATCT	2 cut(s)	880, 968
BisI	GCNGC	8 cut(s)	109, 305, 336, 346, 581, 671, 865, 990
BlsI	GCNGC	8 cut(s)	110, 306, 337, 347, 582, 672, 866, 991
Bme1390I	CCNGG	5 cut(s)	87, 540, 628, 686, 813
Bme18I	GGWCC	2 cut(s)	438, 630
BmgT120I	GGNCC	3 cut(s)	438, 542, 630
BmiI	GGNNCC	2 cut(s)	625, 632
BmrFI	CCNGG	5 cut(s)	87, 540, 628, 686, 813
BmsI	GCATC	2 cut(s)	438, 968
BpiI	GAAGAC	2 cut(s)	531, 1050
Bpu10I	CCTNAGC	1 cut(s)	560
BpuEI	CTTGAG	1 cut(s)	251
BpuMI	CCSGG	1 cut(s)	87
BsaAI	YACGTR	1 cut(s)	767
BsaBI	GATNNNNATC	1 cut(s)	1062
BsaJI	CCNNGG	5 cut(s)	328, 484, 545, 811, 1017
Bsc4I	CCNNNNNNNGG	2 cut(s)	447, 818
Bse1I	ACTGG	1 cut(s)	379
Bse21I	CCTNAGG	1 cut(s)	870
Bse8I	GATNNNNATC	1 cut(s)	1062
BseBI	CCWGG	4 cut(s)	540, 628, 686, 813
BseDI	CCNNGG	5 cut(s)	328, 484, 545, 811, 1017
BseGI	GGATG	1 cut(s)	1138
BseJI	GATNNNNATC	1 cut(s)	1062
BseLI	CCNNNNNNNGG	2 cut(s)	447, 818
BseMII	CTCAG	3 cut(s)	203, 275, 551
BseNI	ACTGG	1 cut(s)	379
BseRI	GAGGAG	4 cut(s)	27, 197, 502, 854
BseSI	GKGCMC	2 cut(s)	626, 831
BseXI	GCAGC	7 cut(s)	120, 291, 322, 592, 682, 851, 1001
BsgI	GTGCAG	2 cut(s)	304, 837
Bsh1236I	CGCG	1 cut(s)	330
BshFI	GGCC	1 cut(s)	543
BshNI	GGYRCC	1 cut(s)	623
BsiSI	CCGG	1 cut(s)	87
BslFI	GGGAC	4 cut(s)	69, 404, 616, 903
BslI	CCNNNNNNNGG	2 cut(s)	447, 818
BsmAI	GTCTC	2 cut(s)	596, 890
BsmFI	GGGAC	4 cut(s)	69, 404, 616, 903
BsnI	GGCC	1 cut(s)	543
Bsp1286I	GDGCHC	2 cut(s)	626, 831
Bsp143I	GATC	4 cut(s)	880, 968, 1063, 1090
Bsp19I	CCATGG	2 cut(s)	484, 545
BspACI	CCGC	4 cut(s)	328, 330, 346, 451
BspANI	GGCC	1 cut(s)	543
BspCNI	CTCAG	3 cut(s)	202, 274, 552
BspFNI	CGCG	1 cut(s)	330
BspLI	GGNNCC	2 cut(s)	625, 632
BspMAI	CTGCAG	1 cut(s)	110
BspMI	ACCTGC	1 cut(s)	924
BspT107I	GGYRCC	1 cut(s)	623
BspTI	CTTAAG	1 cut(s)	317
BsrI	ACTGG	1 cut(s)	379
BssECI	CCNNGG	5 cut(s)	328, 484, 545, 811, 1017
BssMI	GATC	4 cut(s)	880, 968, 1063, 1090
BssT1I	CCWWGG	3 cut(s)	484, 545, 1017
Bst2UI	CCWGG	4 cut(s)	540, 628, 686, 813
Bst4CI	ACNGT	1 cut(s)	734
Bst6I	CTCTTC	3 cut(s)	45, 236, 846
BstAFI	CTTAAG	1 cut(s)	317
BstBAI	YACGTR	1 cut(s)	767
BstDEI	CTNAG	4 cut(s)	189, 261, 560, 870
BstDSI	CCRYGG	3 cut(s)	328, 484, 545
BstF5I	GGATG	1 cut(s)	1138
BstFNI	CGCG	1 cut(s)	330
BstKTI	GATC	4 cut(s)	883, 971, 1066, 1093
BstMAI	GTCTC	2 cut(s)	596, 890
BstMBI	GATC	4 cut(s)	880, 968, 1063, 1090
BstMWI	GCNNNNNNNGC	7 cut(s)	99, 108, 117, 162, 257, 621, 986
BstNI	CCWGG	4 cut(s)	540, 628, 686, 813
BstSCI	CCNGG	5 cut(s)	85, 538, 626, 684, 811
BstSFI	CTRYAG	2 cut(s)	106, 533
BstSLI	GKGCMC	2 cut(s)	626, 831
BstUI	CGCG	1 cut(s)	330
BstV1I	GCAGC	7 cut(s)	120, 291, 322, 592, 682, 851, 1001
BstV2I	GAAGAC	2 cut(s)	531, 1050
BstX2I	RGATCY	2 cut(s)	880, 968
BstYI	RGATCY	2 cut(s)	880, 968
Bsu36I	CCTNAGG	1 cut(s)	870
BsuRI	GGCC	1 cut(s)	543
BtgI	CCRYGG	3 cut(s)	328, 484, 545
BtsCI	GGATG	1 cut(s)	1138
BveI	ACCTGC	1 cut(s)	924
Cfr13I	GGNCC	3 cut(s)	438, 542, 630
Cfr42I	CCGCGG	1 cut(s)	331
CsiI	ACCWGGT	1 cut(s)	626
Csp6I	GTAC	4 cut(s)	76, 141, 150, 179
CviAII	CATG	6 cut(s)	435, 485, 502, 546, 893, 1048
CviQI	GTAC	4 cut(s)	76, 141, 150, 179
DdeI	CTNAG	4 cut(s)	189, 261, 560, 870
DpnI	GATC	4 cut(s)	882, 970, 1065, 1092
DpnII	GATC	4 cut(s)	880, 968, 1063, 1090
Eam1104I	CTCTTC	3 cut(s)	45, 236, 846
EarI	CTCTTC	3 cut(s)	45, 236, 846
Eco130I	CCWWGG	3 cut(s)	484, 545, 1017
Eco47I	GGWCC	2 cut(s)	438, 630
Eco57I	CTGAAG	1 cut(s)	885
Eco81I	CCTNAGG	1 cut(s)	870
EcoO109I	RGGNCCY	1 cut(s)	630
EcoRII	CCWGG	4 cut(s)	538, 626, 684, 811
EcoT14I	CCWWGG	3 cut(s)	484, 545, 1017
EcoT22I	ATGCAT	2 cut(s)	431, 961
ErhI	CCWWGG	3 cut(s)	484, 545, 1017
FaeI	CATG	6 cut(s)	438, 488, 505, 549, 896, 1051
FaqI	GGGAC	4 cut(s)	69, 404, 616, 903
FatI	CATG	6 cut(s)	434, 484, 501, 545, 892, 1047
FbaI	TGATCA	1 cut(s)	1063
Fnu4HI	GCNGC	8 cut(s)	109, 305, 336, 346, 581, 671, 865, 990
FokI	GGATG	1 cut(s)	1145
Fsp4HI	GCNGC	8 cut(s)	109, 305, 336, 346, 581, 671, 865, 990
GluI	GCNGC	8 cut(s)	109, 305, 336, 346, 581, 671, 865, 990
HaeIII	GGCC	1 cut(s)	543
HapII	CCGG	1 cut(s)	87
Hin1II	CATG	6 cut(s)	438, 488, 505, 549, 896, 1051
HinfI	GANTC	5 cut(s)	68, 136, 254, 550, 1079
HpaII	CCGG	1 cut(s)	87
HphI	GGTGA	1 cut(s)	1148
Hpy166II	GTNNAC	3 cut(s)	611, 775, 1004
Hpy188I	TCNGA	7 cut(s)	192, 217, 264, 402, 964, 1090, 1186
Hpy188III	TCNNGA	3 cut(s)	521, 1112, 1124
Hpy8I	GTNNAC	3 cut(s)	611, 775, 1004
HpyAV	CCTTC	4 cut(s)	122, 735, 1133, 1196
HpyCH4III	ACNGT	1 cut(s)	734
HpyCH4IV	ACGT	1 cut(s)	766
HpyCH4V	TGCA	7 cut(s)	57, 108, 285, 429, 818, 959, 980
HpyF10VI	GCNNNNNNNGC	7 cut(s)	99, 108, 117, 162, 257, 621, 986
HpyF3I	CTNAG	4 cut(s)	189, 261, 560, 870
HpySE526I	ACGT	1 cut(s)	766
Hsp92II	CATG	6 cut(s)	438, 488, 505, 549, 896, 1051
Ksp22I	TGATCA	1 cut(s)	1063
KspI	CCGCGG	1 cut(s)	331
Kzo9I	GATC	4 cut(s)	880, 968, 1063, 1090
LmnI	GCTCC	3 cut(s)	98, 107, 1019
Lsp1109I	GCAGC	7 cut(s)	120, 291, 322, 592, 682, 851, 1001
LweI	GCATC	2 cut(s)	438, 968
MabI	ACCWGGT	1 cut(s)	626
MaeII	ACGT	1 cut(s)	766
MaeIII	GTNAC	1 cut(s)	760
MalI	GATC	4 cut(s)	882, 970, 1065, 1092
MboI	GATC	4 cut(s)	880, 968, 1063, 1090
MboII	GAAGA	7 cut(s)	62, 253, 433, 536, 713, 863, 1055
MflI	RGATCY	2 cut(s)	880, 968
MhlI	GDGCHC	2 cut(s)	626, 831
MluCI	AATT	4 cut(s)	477, 566, 793, 1104
MmeI	TCCRAC	1 cut(s)	948
Mph1103I	ATGCAT	2 cut(s)	431, 961
MroXI	GAANNNNTTC	1 cut(s)	1156
MseI	TTAA	7 cut(s)	123, 318, 653, 753, 834, 1073, 1107
MspA1I	CMGCKG	3 cut(s)	330, 583, 864
MspCI	CTTAAG	1 cut(s)	317
MspI	CCGG	1 cut(s)	87
MspR9I	CCNGG	5 cut(s)	87, 540, 628, 686, 813
MvaI	CCWGG	4 cut(s)	540, 628, 686, 813
MvnI	CGCG	1 cut(s)	330
MwoI	GCNNNNNNNGC	7 cut(s)	99, 108, 117, 162, 257, 621, 986
NciI	CCSGG	1 cut(s)	87
NcoI	CCATGG	2 cut(s)	484, 545
NdeII	GATC	4 cut(s)	880, 968, 1063, 1090
NlaIII	CATG	6 cut(s)	438, 488, 505, 549, 896, 1051
NlaIV	GGNNCC	2 cut(s)	625, 632
NmuCI	GTSAC	1 cut(s)	760
NsiI	ATGCAT	2 cut(s)	431, 961
PaqCI	CACCTGC	1 cut(s)	924
PdmI	GAANNNNTTC	1 cut(s)	1156
PfeI	GAWTC	5 cut(s)	68, 136, 254, 550, 1079
PflMI	CCANNNNNTGG	1 cut(s)	447
PkrI	GCNGC	8 cut(s)	110, 306, 337, 347, 582, 672, 866, 991
Ppu21I	YACGTR	1 cut(s)	767
PpuMI	RGGWCCY	1 cut(s)	630
PshBI	ATTAAT	1 cut(s)	1107
Psp5II	RGGWCCY	1 cut(s)	630
Psp6I	CCWGG	4 cut(s)	538, 626, 684, 811
PspGI	CCWGG	4 cut(s)	538, 626, 684, 811
PspN4I	GGNNCC	2 cut(s)	625, 632
PspPI	GGNCC	3 cut(s)	438, 542, 630
PspPPI	RGGWCCY	1 cut(s)	630
PstI	CTGCAG	1 cut(s)	110
PsuI	RGATCY	2 cut(s)	880, 968
PvuII	CAGCTG	2 cut(s)	583, 864
RsaI	GTAC	4 cut(s)	77, 142, 151, 180
RsaNI	GTAC	4 cut(s)	76, 141, 150, 179
SacII	CCGCGG	1 cut(s)	331
SaqAI	TTAA	7 cut(s)	123, 318, 653, 753, 834, 1073, 1107
SatI	GCNGC	8 cut(s)	109, 305, 336, 346, 581, 671, 865, 990
Sau3AI	GATC	4 cut(s)	880, 968, 1063, 1090
Sau96I	GGNCC	3 cut(s)	438, 542, 630
ScrFI	CCNGG	5 cut(s)	87, 540, 628, 686, 813
SduI	GDGCHC	2 cut(s)	626, 831
SexAI	ACCWGGT	1 cut(s)	626
SfaNI	GCATC	2 cut(s)	438, 968
SfcI	CTRYAG	2 cut(s)	106, 533
Sfr303I	CCGCGG	1 cut(s)	331
SgrBI	CCGCGG	1 cut(s)	331
SinI	GGWCC	2 cut(s)	438, 630
SmlI	CTYRAG	2 cut(s)	230, 317
SmoI	CTYRAG	2 cut(s)	230, 317
Sse9I	AATT	4 cut(s)	477, 566, 793, 1104
SsiI	CCGC	4 cut(s)	328, 330, 346, 451
SspI	AATATT	1 cut(s)	1212
StyD4I	CCNGG	5 cut(s)	85, 538, 626, 684, 811
StyI	CCWWGG	3 cut(s)	484, 545, 1017
TaaI	ACNGT	1 cut(s)	734
TaiI	ACGT	1 cut(s)	769
TasI	AATT	4 cut(s)	477, 566, 793, 1104
TatI	WGTACW	1 cut(s)	75
TauI	GCSGC	1 cut(s)	348
TfiI	GAWTC	5 cut(s)	68, 136, 254, 550, 1079
Tru1I	TTAA	7 cut(s)	123, 318, 653, 753, 834, 1073, 1107
Tru9I	TTAA	7 cut(s)	123, 318, 653, 753, 834, 1073, 1107
TseFI	GTSAC	1 cut(s)	760
TseI	GCWGC	7 cut(s)	108, 304, 335, 580, 670, 864, 989
Tsp45I	GTSAC	1 cut(s)	760
TspDTI	ATGAA	4 cut(s)	302, 446, 510, 518
TspGWI	ACGGA	2 cut(s)	24, 629
Van91I	CCANNNNNTGG	1 cut(s)	447
Vha464I	CTTAAG	1 cut(s)	317
VpaK11BI	GGWCC	2 cut(s)	438, 630
VspI	ATTAAT	1 cut(s)	1107
XcmI	CCANNNNNNNNNTGG	2 cut(s)	190, 536
XmnI	GAANNNNTTC	1 cut(s)	1156
Zsp2I	ATGCAT	2 cut(s)	431, 961

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.