Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr1

Orthogroup ID

OG0006202

Physical Location & Seq

Genomic Coordinates Reverse (-)

16403550 .. 16405631

Gene Structure 2082 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000001498

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1224 bp

ATGGAGGAGGACGGAGGAGAAGCAAAGGCAAAGGCGAAGGCCATGTTATGCGAAGAGTGCAAAGCCAAAGAATCCAAGTACAAATGTCCCGGTTGCTCCATACGCTACTGCAGCCTCCCCTGCGTTAAAGCCCACAAGATTCGTACCTCTTGTACGGGCAAGAGAAGCCAAACCCACTTCGTACCCATCTCTCAGATGGACGATAATCTCCTCCTTTCTGACTACAATCTGCTTGAGGAAGTGAAGAGGGTTGCTGATTCTGCTCAGAGATTGAGGAATAAGCTGTGCAGATACAATAGTTTCAGGCTGCCCTTTTATCTTAAGAGCCTCCGCGGTGCTGCTTTTAGCCGCAGAACTAAACTCTTGTTTTTGCCTACTGGTATGTCAAAGAGGGACAAAAATCAGACCCGATACGACACAAGGAAGAAATGCATCACATGGACCATTGAGTGGCGGTTTCATTCAACAGATGTTGTTCTAATTGACCATGGAGTAAATGAAAACAGGAACCTCTCCTCTGTTCTTGAAGACCATCTACAGCCTGGCCCATGGAATCATAAGCTGAGGCAATTCTGTATAGAGCAGCTGGATTGTCTCAAACTTTTTATTCGTAAACGCCCAAAGGGTACCAGGTCACCTTTTTGTGAGTTAGATTTAAGAGTTCCAATCAGGCAGCAATTAGCCAACCTGGATATTTTGGAATACCCTGTCATATATGTTTTTCTTCCATCACACTGTATTGATTTTGAAGTCGTTAAAGATGTCACTCGTAATGTTCACAAACAAGAGCTTCAGAATTATGGAAGTAATGACCCAGGTGCAGGAGGTGTACCCTTTAAGGAGGAGGAAATAGAAGAGGACAACAGCTGCCCTAAGGTGTTAGATCTAAAAGGACATGAGACTTCAGTTTCCCTGCCTCATATTTCCAACAACAGCAGGTGTGAGAAAGGGATAAATAATGCATCAGATAGATCTTTGTCTGCAACAACAGCAGCAGAAAGTGGTTCACATTCCAGCTCCAAGGATAAGGAACAAGGACTTTTTGAAGACATGGAGTTTGATTTTGATCAAGGCTTAATAGACTCGTATTCCGATCTTATTGCTGAAATTAATCCCGATGATTTTCTTGATTTGGATGGTGAAGGGATAGAAAGAAATCTTTCAGGTATCAGGGGTTTCTTATTGTCAGATGATGATATAGAGGAAGGGGAAATATTAGAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TIC20 zf-HIT

Protein Analysis

408

Amino Acids

46.38

Weight (kDa)

5.77

Isoelectric Point (pI)

55.65

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-HIT	PF04438	15 - 43	4.6e-09	HIT zinc finger
BCD1	PF25790	108 - 251	5.4e-50	BCD1 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006202)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G04945 AT1G04945 AT1G04945 AT1G04945
fragaria_vesca	FvH4_5g32720
malus_domestica	MD02G1318000.v1.1 MD07G1003300.v1.1
prunus_persica	Prupe.2G005000_v2.0.a1 Prupe.2G005000_v2.0.a1 Prupe.2G005000_v2.0.a1 Prupe.2G005000_v2.0.a1 Prupe.2G005000_v2.0.a1 Prupe.2G005000_v2.0.a1
pyrus_communis	pycom02g26620 pycom07g00330
rosa_chinensis	RchiOBHm_Chr7g0230361
rosa_laevigata	RLG00000001498
rosa_multiflora	Rmu_sc0002541.1_g000034 Rmu_sc0007103.1_g000018
rosa_roxburghii	Rroxscaffold_3G00230200
rosa_rugosa	Rorug07G0260200
rosa_samantha	Rh7AG409600 Rh7AG411300 Rh7BG389400 Rh7CG429000 Rh7DG407600
rosa_wichuraiana	Rw7G034210

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	927
Acc36I	ACCTGC	1 cut(s)	927
Acc65I	GGTACC	1 cut(s)	626
AccB1I	GGYRCC	1 cut(s)	626
AccB7I	CCANNNNNTGG	1 cut(s)	450
AccII	CGCG	1 cut(s)	333
AciI	CCGC	4 cut(s)	331, 333, 349, 454
AcuI	CTGAAG	2 cut(s)	776, 888
AfaI	GTAC	6 cut(s)	80, 145, 154, 183, 628, 831
AfiI	CCNNNNNNNGG	2 cut(s)	450, 821
AflII	CTTAAG	1 cut(s)	320
AgsI	TTSAA	4 cut(s)	465, 527, 749, 1046
AjnI	CCWGG	4 cut(s)	541, 629, 687, 814
AluBI	AGCT	6 cut(s)	283, 562, 586, 790, 867, 1017
AluI	AGCT	6 cut(s)	283, 562, 586, 790, 867, 1017
Alw26I	GTCTC	2 cut(s)	599, 893
AoxI	GGCC	2 cut(s)	39, 544
ApeKI	GCWGC	7 cut(s)	111, 307, 338, 583, 673, 867, 992
ArsI	GACNNNNNNTTYG	2 cut(s)	1040, 1072
AseI	ATTAAT	1 cut(s)	1110
Asp700I	GAANNNNTTC	1 cut(s)	1159
Asp718I	GGTACC	1 cut(s)	626
AspS9I	GGNCC	2 cut(s)	441, 545
AsuC2I	CCSGG	1 cut(s)	90
AsuHPI	GGTGA	2 cut(s)	627, 1151
AvaII	GGWCC	1 cut(s)	441
AxyI	CCTNAGG	1 cut(s)	873
BaeI	ACNNNNGTAYC	2 cut(s)	283, 316
BanI	GGYRCC	1 cut(s)	626
BarI	GAAGNNNNNNTAC	2 cut(s)	519, 551
BbsI	GAAGAC	2 cut(s)	534, 1053
BbvCI	CCTCAGC	1 cut(s)	563
BbvI	GCAGC	7 cut(s)	123, 294, 325, 595, 685, 854, 1004
BccI	CCATC	5 cut(s)	190, 194, 540, 736, 1130
BcgI	CGANNNNNNTGC	2 cut(s)	1082, 1116
BciT130I	CCWGG	4 cut(s)	543, 631, 689, 816
BclI	TGATCA	1 cut(s)	1066
BcnI	CCSGG	1 cut(s)	90
BcoDI	GTCTC	2 cut(s)	599, 893
BfmI	CTRYAG	2 cut(s)	109, 536
BfrI	CTTAAG	1 cut(s)	320
BfuAI	ACCTGC	1 cut(s)	927
BglII	AGATCT	2 cut(s)	883, 971
BisI	GCNGC	8 cut(s)	112, 308, 339, 349, 584, 674, 868, 993
BlsI	GCNGC	8 cut(s)	113, 309, 340, 350, 585, 675, 869, 994
Bme1390I	CCNGG	5 cut(s)	90, 543, 631, 689, 816
Bme18I	GGWCC	1 cut(s)	441
BmgT120I	GGNCC	2 cut(s)	441, 545
BmiI	GGNNCC	2 cut(s)	509, 628
BmrFI	CCNGG	5 cut(s)	90, 543, 631, 689, 816
BmsI	GCATC	2 cut(s)	441, 971
BpiI	GAAGAC	2 cut(s)	534, 1053
Bpu10I	CCTNAGC	1 cut(s)	563
BpuEI	CTTGAG	1 cut(s)	254
BpuMI	CCSGG	1 cut(s)	90
BsaBI	GATNNNNATC	1 cut(s)	1065
BsaJI	CCNNGG	5 cut(s)	331, 487, 548, 814, 1020
Bsc4I	CCNNNNNNNGG	2 cut(s)	450, 821
Bse1I	ACTGG	1 cut(s)	382
Bse21I	CCTNAGG	1 cut(s)	873
Bse8I	GATNNNNATC	1 cut(s)	1065
BseBI	CCWGG	4 cut(s)	543, 631, 689, 816
BseDI	CCNNGG	5 cut(s)	331, 487, 548, 814, 1020
BseGI	GGATG	1 cut(s)	1141
BseJI	GATNNNNATC	1 cut(s)	1065
BseLI	CCNNNNNNNGG	2 cut(s)	450, 821
BseMII	CTCAG	3 cut(s)	206, 278, 554
BseNI	ACTGG	1 cut(s)	382
BseRI	GAGGAG	5 cut(s)	20, 30, 200, 505, 857
BseXI	GCAGC	7 cut(s)	123, 294, 325, 595, 685, 854, 1004
BsgI	GTGCAG	2 cut(s)	307, 840
Bsh1236I	CGCG	1 cut(s)	333
BshFI	GGCC	2 cut(s)	41, 546
BshNI	GGYRCC	1 cut(s)	626
BsiSI	CCGG	1 cut(s)	90
BslFI	GGGAC	2 cut(s)	72, 407
BslI	CCNNNNNNNGG	2 cut(s)	450, 821
BsmAI	GTCTC	2 cut(s)	599, 893
BsmFI	GGGAC	2 cut(s)	72, 407
BsnI	GGCC	2 cut(s)	41, 546
Bsp143I	GATC	4 cut(s)	883, 971, 1066, 1093
Bsp19I	CCATGG	2 cut(s)	487, 548
BspACI	CCGC	4 cut(s)	331, 333, 349, 454
BspANI	GGCC	2 cut(s)	41, 546
BspCNI	CTCAG	3 cut(s)	205, 277, 555
BspFNI	CGCG	1 cut(s)	333
BspLI	GGNNCC	2 cut(s)	509, 628
BspMAI	CTGCAG	1 cut(s)	113
BspMI	ACCTGC	1 cut(s)	927
BspT107I	GGYRCC	1 cut(s)	626
BspTI	CTTAAG	1 cut(s)	320
BsrI	ACTGG	1 cut(s)	382
BssECI	CCNNGG	5 cut(s)	331, 487, 548, 814, 1020
BssMI	GATC	4 cut(s)	883, 971, 1066, 1093
BssT1I	CCWWGG	3 cut(s)	487, 548, 1020
Bst2UI	CCWGG	4 cut(s)	543, 631, 689, 816
Bst4CI	ACNGT	1 cut(s)	737
Bst6I	CTCTTC	3 cut(s)	48, 239, 849
BstAFI	CTTAAG	1 cut(s)	320
BstDEI	CTNAG	4 cut(s)	192, 264, 563, 873
BstDSI	CCRYGG	3 cut(s)	331, 487, 548
BstEII	GGTNACC	1 cut(s)	633
BstF5I	GGATG	1 cut(s)	1141
BstFNI	CGCG	1 cut(s)	333
BstKTI	GATC	4 cut(s)	886, 974, 1069, 1096
BstMAI	GTCTC	2 cut(s)	599, 893
BstMBI	GATC	4 cut(s)	883, 971, 1066, 1093
BstMWI	GCNNNNNNNGC	7 cut(s)	57, 102, 111, 120, 165, 260, 989
BstNI	CCWGG	4 cut(s)	543, 631, 689, 816
BstPI	GGTNACC	1 cut(s)	633
BstSCI	CCNGG	5 cut(s)	88, 541, 629, 687, 814
BstSFI	CTRYAG	2 cut(s)	109, 536
BstUI	CGCG	1 cut(s)	333
BstV1I	GCAGC	7 cut(s)	123, 294, 325, 595, 685, 854, 1004
BstV2I	GAAGAC	2 cut(s)	534, 1053
BstX2I	RGATCY	2 cut(s)	883, 971
BstYI	RGATCY	2 cut(s)	883, 971
Bsu36I	CCTNAGG	1 cut(s)	873
BsuRI	GGCC	2 cut(s)	41, 546
BtgI	CCRYGG	3 cut(s)	331, 487, 548
BtsCI	GGATG	1 cut(s)	1141
BtsIMutI	CAGTG	1 cut(s)	733
BveI	ACCTGC	1 cut(s)	927
Cfr13I	GGNCC	2 cut(s)	441, 545
Cfr42I	CCGCGG	1 cut(s)	334
CsiI	ACCWGGT	1 cut(s)	629
Csp6I	GTAC	6 cut(s)	79, 144, 153, 182, 627, 830
CviAII	CATG	6 cut(s)	43, 438, 488, 549, 896, 1051
CviQI	GTAC	6 cut(s)	79, 144, 153, 182, 627, 830
DdeI	CTNAG	4 cut(s)	192, 264, 563, 873
DpnI	GATC	4 cut(s)	885, 973, 1068, 1095
DpnII	GATC	4 cut(s)	883, 971, 1066, 1093
Eam1104I	CTCTTC	3 cut(s)	48, 239, 849
EarI	CTCTTC	3 cut(s)	48, 239, 849
Eco130I	CCWWGG	3 cut(s)	487, 548, 1020
Eco47I	GGWCC	1 cut(s)	441
Eco57I	CTGAAG	2 cut(s)	776, 888
Eco81I	CCTNAGG	1 cut(s)	873
Eco91I	GGTNACC	1 cut(s)	633
EcoO65I	GGTNACC	1 cut(s)	633
EcoRII	CCWGG	4 cut(s)	541, 629, 687, 814
EcoT14I	CCWWGG	3 cut(s)	487, 548, 1020
EcoT22I	ATGCAT	2 cut(s)	434, 964
ErhI	CCWWGG	3 cut(s)	487, 548, 1020
FaeI	CATG	6 cut(s)	46, 441, 491, 552, 899, 1054
FaqI	GGGAC	2 cut(s)	72, 407
FatI	CATG	6 cut(s)	42, 437, 487, 548, 895, 1050
FbaI	TGATCA	1 cut(s)	1066
Fnu4HI	GCNGC	8 cut(s)	112, 308, 339, 349, 584, 674, 868, 993
FokI	GGATG	1 cut(s)	1148
Fsp4HI	GCNGC	8 cut(s)	112, 308, 339, 349, 584, 674, 868, 993
GluI	GCNGC	8 cut(s)	112, 308, 339, 349, 584, 674, 868, 993
HaeIII	GGCC	2 cut(s)	41, 546
HapII	CCGG	1 cut(s)	90
Hin1II	CATG	6 cut(s)	46, 441, 491, 552, 899, 1054
HinfI	GANTC	5 cut(s)	71, 139, 257, 553, 1082
HpaII	CCGG	1 cut(s)	90
HphI	GGTGA	2 cut(s)	627, 1151
Hpy166II	GTNNAC	4 cut(s)	614, 778, 830, 1007
Hpy188I	TCNGA	8 cut(s)	195, 220, 267, 405, 795, 967, 1093, 1189
Hpy188III	TCNNGA	3 cut(s)	524, 1115, 1127
Hpy8I	GTNNAC	4 cut(s)	614, 778, 830, 1007
HpyAV	CCTTC	3 cut(s)	31, 1136, 1199
HpyCH4III	ACNGT	1 cut(s)	737
HpyCH4V	TGCA	7 cut(s)	60, 111, 288, 432, 821, 962, 983
HpyF10VI	GCNNNNNNNGC	7 cut(s)	57, 102, 111, 120, 165, 260, 989
HpyF3I	CTNAG	4 cut(s)	192, 264, 563, 873
Hsp92II	CATG	6 cut(s)	46, 441, 491, 552, 899, 1054
KpnI	GGTACC	1 cut(s)	630
Ksp22I	TGATCA	1 cut(s)	1066
KspI	CCGCGG	1 cut(s)	334
Kzo9I	GATC	4 cut(s)	883, 971, 1066, 1093
LmnI	GCTCC	2 cut(s)	101, 1022
Lsp1109I	GCAGC	7 cut(s)	123, 294, 325, 595, 685, 854, 1004
LweI	GCATC	2 cut(s)	441, 971
MabI	ACCWGGT	1 cut(s)	629
MaeIII	GTNAC	2 cut(s)	633, 763
MalI	GATC	4 cut(s)	885, 973, 1068, 1095
MboI	GATC	4 cut(s)	883, 971, 1066, 1093
MboII	GAAGA	7 cut(s)	65, 256, 436, 539, 716, 866, 1058
MflI	RGATCY	2 cut(s)	883, 971
MluCI	AATT	5 cut(s)	480, 569, 677, 796, 1107
MlyI	GAGTC	1 cut(s)	1076
MmeI	TCCRAC	1 cut(s)	951
Mph1103I	ATGCAT	2 cut(s)	434, 964
MroXI	GAANNNNTTC	1 cut(s)	1159
MseI	TTAA	7 cut(s)	126, 321, 656, 756, 837, 1076, 1110
MspA1I	CMGCKG	3 cut(s)	333, 586, 867
MspCI	CTTAAG	1 cut(s)	320
MspI	CCGG	1 cut(s)	90
MspR9I	CCNGG	5 cut(s)	90, 543, 631, 689, 816
MvaI	CCWGG	4 cut(s)	543, 631, 689, 816
MvnI	CGCG	1 cut(s)	333
MwoI	GCNNNNNNNGC	7 cut(s)	57, 102, 111, 120, 165, 260, 989
NciI	CCSGG	1 cut(s)	90
NcoI	CCATGG	2 cut(s)	487, 548
NdeII	GATC	4 cut(s)	883, 971, 1066, 1093
NlaIII	CATG	6 cut(s)	46, 441, 491, 552, 899, 1054
NlaIV	GGNNCC	2 cut(s)	509, 628
NmuCI	GTSAC	2 cut(s)	633, 763
NsiI	ATGCAT	2 cut(s)	434, 964
PaqCI	CACCTGC	1 cut(s)	927
PdmI	GAANNNNTTC	1 cut(s)	1159
PfeI	GAWTC	4 cut(s)	71, 139, 257, 553
PflMI	CCANNNNNTGG	1 cut(s)	450
PkrI	GCNGC	8 cut(s)	113, 309, 340, 350, 585, 675, 869, 994
PleI	GAGTC	1 cut(s)	1076
PpsI	GAGTC	1 cut(s)	1076
PshBI	ATTAAT	1 cut(s)	1110
Psp6I	CCWGG	4 cut(s)	541, 629, 687, 814
PspEI	GGTNACC	1 cut(s)	633
PspGI	CCWGG	4 cut(s)	541, 629, 687, 814
PspN4I	GGNNCC	2 cut(s)	509, 628
PspPI	GGNCC	2 cut(s)	441, 545
PstI	CTGCAG	1 cut(s)	113
PsuI	RGATCY	2 cut(s)	883, 971
PvuII	CAGCTG	2 cut(s)	586, 867
RsaI	GTAC	6 cut(s)	80, 145, 154, 183, 628, 831
RsaNI	GTAC	6 cut(s)	79, 144, 153, 182, 627, 830
SacII	CCGCGG	1 cut(s)	334
SaqAI	TTAA	7 cut(s)	126, 321, 656, 756, 837, 1076, 1110
SatI	GCNGC	8 cut(s)	112, 308, 339, 349, 584, 674, 868, 993
Sau3AI	GATC	4 cut(s)	883, 971, 1066, 1093
Sau96I	GGNCC	2 cut(s)	441, 545
SchI	GAGTC	1 cut(s)	1076
ScrFI	CCNGG	5 cut(s)	90, 543, 631, 689, 816
SexAI	ACCWGGT	1 cut(s)	629
SfaNI	GCATC	2 cut(s)	441, 971
SfcI	CTRYAG	2 cut(s)	109, 536
Sfr303I	CCGCGG	1 cut(s)	334
SgrBI	CCGCGG	1 cut(s)	334
SinI	GGWCC	1 cut(s)	441
SmlI	CTYRAG	2 cut(s)	233, 320
SmoI	CTYRAG	2 cut(s)	233, 320
Sse9I	AATT	5 cut(s)	480, 569, 677, 796, 1107
SsiI	CCGC	4 cut(s)	331, 333, 349, 454
SspI	AATATT	1 cut(s)	1215
StyD4I	CCNGG	5 cut(s)	88, 541, 629, 687, 814
StyI	CCWWGG	3 cut(s)	487, 548, 1020
TaaI	ACNGT	1 cut(s)	737
TasI	AATT	5 cut(s)	480, 569, 677, 796, 1107
TatI	WGTACW	1 cut(s)	78
TauI	GCSGC	1 cut(s)	351
TfiI	GAWTC	4 cut(s)	71, 139, 257, 553
Tru1I	TTAA	7 cut(s)	126, 321, 656, 756, 837, 1076, 1110
Tru9I	TTAA	7 cut(s)	126, 321, 656, 756, 837, 1076, 1110
TscAI	CASTG	1 cut(s)	740
TseFI	GTSAC	2 cut(s)	633, 763
TseI	GCWGC	7 cut(s)	111, 307, 338, 583, 673, 867, 992
Tsp45I	GTSAC	2 cut(s)	633, 763
TspDTI	ATGAA	2 cut(s)	449, 513
TspGWI	ACGGA	1 cut(s)	27
TspRI	CASTG	1 cut(s)	740
Van91I	CCANNNNNTGG	1 cut(s)	450
Vha464I	CTTAAG	1 cut(s)	320
VpaK11BI	GGWCC	1 cut(s)	441
VspI	ATTAAT	1 cut(s)	1110
XcmI	CCANNNNNNNNNTGG	2 cut(s)	193, 539
XmnI	GAANNNNTTC	1 cut(s)	1159
Zsp2I	ATGCAT	2 cut(s)	434, 964

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.