Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr7

Orthogroup ID

OG0006202

Physical Location & Seq

Genomic Coordinates Forward (+)

323328 .. 326105

Gene Structure 2778 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom07g00330.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1386 bp

ATGCGGGTGGGGTATAGTAAGTCAAAGTCAATATCAAACGAAACGACGTCGTTGCAACGTTGTGAGGATCTACTTCATAAACCCTACTTTGCCGGTCCTTCCCCAAACCCCTTTGCGTCTGTCAGTGCGTGTGAAAGAAGACCCATGGAGGAAGGCGGAGGACAAGCAGGTACAGCAAAACCAAACCCCAAAGTATGCGAAGAGTGCAGAGAGAAAGCATCCAAGTACAAATGTCCAGGCTGCTCCGTACGCTCCTGCAGCCTTCCGTGCGTCAAAGTTCACAAGCTTCGCACTGGCTGTACGGGCAAGAGGCCCCAAACCAGCTTCGTCCCCCTCTCTCAGATCGACGACAATCAGCTCCTTTCAGATTACAATTTGCTTGAGGAAGTGAAGAGGGTTGCTGAGTCTGCTCAGAGATTGAGAAATAAGTTGTGCAGATATAATAATTTTAGGCTACCCTTTTACCTTAAAAGCCTTCGGAGTGCTGCTGCCAGTCGCAGGACAAAACTCTTATTTCTACCAAGTGGAATGTCAAAAAGGGAGAAAAATCAAACTCGATATGATCAAAGGAAGAAATGCATCTCCTGGACAATTGAATGGCGATTTCATTCAACGGATGTTGTTTTAATTGACCATGAAGTAAATGAAAACATGAACCTATGCTCTGTTATGGAGAACCATCTAAAACCTGGGCCATGGAATCATCACCTAAAGCTATTCTGTGAGGAACAGCTTGACTCTCTCAAGCTTTTTGTTCGTAAATATCCGAAGGGGGCTAGGTCACCTTTCTGTGAGTTGGATATAAGAGTTCCGATAAGGCAGCAGTTAGCAAACTTAGTTATTTTGGAATACCCTGTCATTTATGTTTTTCTCCCTTCGCACAGTCTTGATTTTGAAGTAGTTAAAAATTCCCCTCCTACTTTCGGCAAACCAGAGCTTAAGATTTATGGAAGAAATGATTTGAGCGCAGGAGGTGTTCCCTTTAAGGAGGAGGAAATAGAAGAAGACAATAGCTATCCTAAGGTCTTTGATCTCATGAAACATGTGACTTCAAGTTCCCCACCTAATATCTCTAATAAAAGGAGGTGCGAGAAACCACTCGATGATTCATTTGCTAGGCCCTTGTCTGTAACTGTGGAAACTGGCAACGATTCACATTCCAGCTCCGATGCTAAGAAGCAAGTGTTTTTGGAAGACATGGACTTTGATTTTGATCAAGGCTTAATAGATGAGTACTCAGATCTTATGGCAGAAATTAATCCTGATGATTTTCTTGATTTGGAAGGCGAATTTACCAAGGAAGGAGTAGCAGAAAGAAATCTTTCGAGTGTCAGGAAGTTCCTATTAGCAGATGACGACATAGAGGAGGGAGAAATTTTAGAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TIC20 zf-HIT

Protein Analysis

462

Amino Acids

52.6

Weight (kDa)

6.42

Isoelectric Point (pI)

54.96

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006202)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G04945 AT1G04945 AT1G04945 AT1G04945
fragaria_vesca	FvH4_5g32720
malus_domestica	MD02G1318000.v1.1 MD07G1003300.v1.1
prunus_persica	Prupe.2G005000_v2.0.a1 Prupe.2G005000_v2.0.a1 Prupe.2G005000_v2.0.a1 Prupe.2G005000_v2.0.a1 Prupe.2G005000_v2.0.a1 Prupe.2G005000_v2.0.a1
pyrus_communis	pycom02g26620 pycom07g00330
rosa_chinensis	RchiOBHm_Chr7g0230361
rosa_laevigata	RLG00000001498
rosa_multiflora	Rmu_sc0002541.1_g000034 Rmu_sc0007103.1_g000018
rosa_roxburghii	Rroxscaffold_3G00230200
rosa_rugosa	Rorug07G0260200
rosa_samantha	Rh7AG409600 Rh7AG411300 Rh7BG389400 Rh7CG429000 Rh7DG407600
rosa_wichuraiana	Rw7G034210

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	50
Acc36I	ACCTGC	1 cut(s)	158
AciI	CCGC	2 cut(s)	4, 156
AclI	AACGTT	1 cut(s)	58
AclWI	GGATC	1 cut(s)	75
AcsI	RAATTY	3 cut(s)	907, 1289, 1374
AcyI	GRCGYC	1 cut(s)	47
AfaI	GTAC	5 cut(s)	172, 227, 249, 301, 1235
AfiI	CCNNNNNNNGG	2 cut(s)	498, 923
AflII	CTTAAG	1 cut(s)	938
AflIII	ACRYGT	1 cut(s)	1042
AgsI	TTSAA	4 cut(s)	596, 612, 896, 1053
AjnI	CCWGG	3 cut(s)	235, 584, 688
AluBI	AGCT	9 cut(s)	286, 324, 358, 715, 733, 748, 937, 1014, 1164
AluI	AGCT	9 cut(s)	286, 324, 358, 715, 733, 748, 937, 1014, 1164
AlwI	GGATC	1 cut(s)	75
AoxI	GGCC	3 cut(s)	311, 692, 1118
ApeKI	GCWGC	5 cut(s)	240, 258, 485, 488, 820
ApoI	RAATTY	3 cut(s)	907, 1289, 1374
ArsI	GACNNNNNNTTYG	4 cut(s)	1187, 1193, 1219, 1225
AseI	ATTAAT	1 cut(s)	1257
Asp700I	GAANNNNTTC	1 cut(s)	1321
AspLEI	GCGC	1 cut(s)	968
AspS9I	GGNCC	4 cut(s)	95, 312, 692, 1119
AsuHPI	GGTGA	2 cut(s)	698, 774
AvaII	GGWCC	1 cut(s)	95
AxyI	CCTNAGG	1 cut(s)	1020
BbsI	GAAGAC	3 cut(s)	145, 1011, 1200
BbvI	GCAGC	5 cut(s)	227, 270, 472, 475, 832
BccI	CCATC	1 cut(s)	687
BcgI	CGANNNNNNTGC	2 cut(s)	34, 68
BciT130I	CCWGG	3 cut(s)	237, 586, 690
BclI	TGATCA	2 cut(s)	562, 1213
BfaI	CTAG	2 cut(s)	777, 1116
BfmI	CTRYAG	1 cut(s)	256
BfrI	CTTAAG	1 cut(s)	938
BfuAI	ACCTGC	1 cut(s)	158
BglII	AGATCT	1 cut(s)	1240
BisI	GCNGC	5 cut(s)	241, 259, 486, 489, 821
BlsI	GCNGC	5 cut(s)	242, 260, 487, 490, 822
BmcAI	AGTACT	1 cut(s)	1235
Bme1390I	CCNGG	3 cut(s)	237, 586, 690
Bme18I	GGWCC	1 cut(s)	95
BmgT120I	GGNCC	4 cut(s)	95, 312, 692, 1119
BmiI	GGNNCC	1 cut(s)	314
BmrFI	CCNGG	3 cut(s)	237, 586, 690
BmsI	GCATC	3 cut(s)	227, 588, 1159
BpiI	GAAGAC	3 cut(s)	145, 1011, 1200
BpuEI	CTTGAG	2 cut(s)	401, 728
BsaBI	GATNNNNATC	1 cut(s)	1212
BsaHI	GRCGYC	1 cut(s)	47
BsaJI	CCNNGG	4 cut(s)	144, 689, 695, 1296
Bsc4I	CCNNNNNNNGG	2 cut(s)	498, 923
Bse118I	RCCGGY	1 cut(s)	92
Bse1I	ACTGG	3 cut(s)	298, 492, 1147
Bse21I	CCTNAGG	1 cut(s)	1020
Bse8I	GATNNNNATC	1 cut(s)	1212
BseBI	CCWGG	3 cut(s)	237, 586, 690
BseDI	CCNNGG	4 cut(s)	144, 689, 695, 1296
BseGI	GGATG	2 cut(s)	218, 622
BseJI	GATNNNNATC	1 cut(s)	1212
BseLI	CCNNNNNNNGG	2 cut(s)	498, 923
BseMII	CTCAG	4 cut(s)	353, 393, 425, 1251
BseNI	ACTGG	3 cut(s)	298, 492, 1147
BseRI	GAGGAG	2 cut(s)	1004, 1379
BseXI	GCAGC	5 cut(s)	227, 270, 472, 475, 832
BsgI	GTGCAG	2 cut(s)	226, 454
BshFI	GGCC	3 cut(s)	313, 694, 1120
BsiSI	CCGG	1 cut(s)	93
BsiWI	CGTACG	1 cut(s)	247
BslFI	GGGAC	1 cut(s)	314
BslI	CCNNNNNNNGG	2 cut(s)	498, 923
BsmFI	GGGAC	1 cut(s)	314
BsnI	GGCC	3 cut(s)	313, 694, 1120
Bsp143I	GATC	6 cut(s)	67, 342, 562, 1030, 1213, 1240
Bsp19I	CCATGG	2 cut(s)	144, 695
BspACI	CCGC	2 cut(s)	4, 156
BspANI	GGCC	3 cut(s)	313, 694, 1120
BspCNI	CTCAG	4 cut(s)	352, 394, 424, 1250
BspHI	TCATGA	1 cut(s)	1035
BspLI	GGNNCC	1 cut(s)	314
BspMAI	CTGCAG	1 cut(s)	260
BspMI	ACCTGC	1 cut(s)	158
BspPI	GGATC	1 cut(s)	75
BspTI	CTTAAG	1 cut(s)	938
BsrFI	RCCGGY	1 cut(s)	92
BsrI	ACTGG	3 cut(s)	298, 492, 1147
BssAI	RCCGGY	1 cut(s)	92
BssECI	CCNNGG	4 cut(s)	144, 689, 695, 1296
BssMI	GATC	6 cut(s)	67, 342, 562, 1030, 1213, 1240
BssNI	GRCGYC	1 cut(s)	47
BssT1I	CCWWGG	3 cut(s)	144, 695, 1296
Bst2UI	CCWGG	3 cut(s)	237, 586, 690
Bst4CI	ACNGT	2 cut(s)	884, 1135
Bst6I	CTCTTC	2 cut(s)	195, 386
BstACI	GRCGYC	1 cut(s)	47
BstAFI	CTTAAG	1 cut(s)	938
BstDEI	CTNAG	7 cut(s)	339, 402, 411, 835, 1020, 1173, 1237
BstDSI	CCRYGG	2 cut(s)	144, 695
BstEII	GGTNACC	1 cut(s)	780
BstF5I	GGATG	2 cut(s)	218, 622
BstHHI	GCGC	1 cut(s)	968
BstKTI	GATC	6 cut(s)	70, 345, 565, 1033, 1216, 1243
BstMBI	GATC	6 cut(s)	67, 342, 562, 1030, 1213, 1240
BstMWI	GCNNNNNNNGC	7 cut(s)	173, 204, 249, 258, 267, 303, 407
BstNI	CCWGG	3 cut(s)	237, 586, 690
BstNSI	RCATGY	1 cut(s)	1046
BstPI	GGTNACC	1 cut(s)	780
BstSCI	CCNGG	3 cut(s)	235, 584, 688
BstSFI	CTRYAG	1 cut(s)	256
BstV1I	GCAGC	5 cut(s)	227, 270, 472, 475, 832
BstV2I	GAAGAC	3 cut(s)	145, 1011, 1200
BstX2I	RGATCY	2 cut(s)	67, 1240
BstYI	RGATCY	2 cut(s)	67, 1240
Bsu36I	CCTNAGG	1 cut(s)	1020
BsuRI	GGCC	3 cut(s)	313, 694, 1120
BtgI	CCRYGG	2 cut(s)	144, 695
BtsCI	GGATG	2 cut(s)	218, 622
BtsIMutI	CAGTG	2 cut(s)	130, 291
BveI	ACCTGC	1 cut(s)	158
CciI	TCATGA	1 cut(s)	1035
CfoI	GCGC	1 cut(s)	968
Cfr10I	RCCGGY	1 cut(s)	92
Cfr13I	GGNCC	4 cut(s)	95, 312, 692, 1119
CseI	GACGC	2 cut(s)	105, 259
Csp6I	GTAC	5 cut(s)	171, 226, 248, 300, 1234
CviAII	CATG	7 cut(s)	145, 635, 652, 696, 1036, 1043, 1198
CviQI	GTAC	5 cut(s)	171, 226, 248, 300, 1234
DdeI	CTNAG	7 cut(s)	339, 402, 411, 835, 1020, 1173, 1237
DpnI	GATC	6 cut(s)	69, 344, 564, 1032, 1215, 1242
DpnII	GATC	6 cut(s)	67, 342, 562, 1030, 1213, 1240
Eam1104I	CTCTTC	2 cut(s)	195, 386
EarI	CTCTTC	2 cut(s)	195, 386
EciI	GGCGGA	1 cut(s)	171
Eco130I	CCWWGG	3 cut(s)	144, 695, 1296
Eco47I	GGWCC	1 cut(s)	95
Eco81I	CCTNAGG	1 cut(s)	1020
Eco91I	GGTNACC	1 cut(s)	780
EcoO109I	RGGNCCY	2 cut(s)	312, 1119
EcoO65I	GGTNACC	1 cut(s)	780
EcoRII	CCWGG	3 cut(s)	235, 584, 688
EcoT14I	CCWWGG	3 cut(s)	144, 695, 1296
EcoT22I	ATGCAT	1 cut(s)	581
ErhI	CCWWGG	3 cut(s)	144, 695, 1296
FaeI	CATG	7 cut(s)	148, 638, 655, 699, 1039, 1046, 1201
FaqI	GGGAC	1 cut(s)	314
FatI	CATG	7 cut(s)	144, 634, 651, 695, 1035, 1042, 1197
FbaI	TGATCA	2 cut(s)	562, 1213
Fnu4HI	GCNGC	5 cut(s)	241, 259, 486, 489, 821
FokI	GGATG	2 cut(s)	205, 629
Fsp4HI	GCNGC	5 cut(s)	241, 259, 486, 489, 821
FspBI	CTAG	2 cut(s)	777, 1116
GlaI	GCGC	1 cut(s)	967
GluI	GCNGC	5 cut(s)	241, 259, 486, 489, 821
HaeIII	GGCC	3 cut(s)	313, 694, 1120
HapII	CCGG	1 cut(s)	93
HgaI	GACGC	2 cut(s)	105, 259
HhaI	GCGC	1 cut(s)	968
Hin1I	GRCGYC	1 cut(s)	47
Hin1II	CATG	7 cut(s)	148, 638, 655, 699, 1039, 1046, 1201
Hin6I	GCGC	1 cut(s)	966
HinP1I	GCGC	1 cut(s)	966
HindIII	AAGCTT	2 cut(s)	284, 746
HinfI	GANTC	5 cut(s)	404, 700, 737, 1106, 1151
HpaII	CCGG	1 cut(s)	93
HphI	GGTGA	2 cut(s)	698, 774
Hpy166II	GTNNAC	1 cut(s)	280
Hpy188I	TCNGA	8 cut(s)	342, 367, 414, 480, 768, 813, 1168, 1240
Hpy188III	TCNNGA	5 cut(s)	887, 1036, 1262, 1274, 1333
Hpy8I	GTNNAC	1 cut(s)	280
Hpy99I	CGWCG	3 cut(s)	49, 52, 350
HpyAV	CCTTC	8 cut(s)	108, 146, 272, 485, 763, 885, 1277, 1295
HpyCH4III	ACNGT	2 cut(s)	884, 1135
HpyCH4IV	ACGT	2 cut(s)	47, 58
HpyCH4V	TGCA	5 cut(s)	55, 207, 258, 435, 579
HpyF10VI	GCNNNNNNNGC	7 cut(s)	173, 204, 249, 258, 267, 303, 407
HpyF3I	CTNAG	7 cut(s)	339, 402, 411, 835, 1020, 1173, 1237
HpySE526I	ACGT	2 cut(s)	47, 58
Hsp92I	GRCGYC	1 cut(s)	47
Hsp92II	CATG	7 cut(s)	148, 638, 655, 699, 1039, 1046, 1201
HspAI	GCGC	1 cut(s)	966
Ksp22I	TGATCA	2 cut(s)	562, 1213
Kzo9I	GATC	6 cut(s)	67, 342, 562, 1030, 1213, 1240
LmnI	GCTCC	4 cut(s)	248, 257, 363, 1169
Lsp1109I	GCAGC	5 cut(s)	227, 270, 472, 475, 832
LweI	GCATC	3 cut(s)	227, 588, 1159
MaeI	CTAG	2 cut(s)	777, 1116
MaeII	ACGT	2 cut(s)	47, 58
MaeIII	GTNAC	3 cut(s)	780, 1045, 1129
MalI	GATC	6 cut(s)	69, 344, 564, 1032, 1215, 1242
MboI	GATC	6 cut(s)	67, 342, 562, 1030, 1213, 1240
MboII	GAAGA	8 cut(s)	150, 212, 403, 583, 963, 1013, 1016, 1205
MfeI	CAATTG	1 cut(s)	591
MflI	RGATCY	2 cut(s)	67, 1240
MluCI	AATT	8 cut(s)	373, 445, 591, 627, 907, 1254, 1289, 1374
MlyI	GAGTC	2 cut(s)	413, 731
MmeI	TCCRAC	1 cut(s)	777
Mph1103I	ATGCAT	1 cut(s)	581
MroXI	GAANNNNTTC	1 cut(s)	1321
MseI	TTAA	7 cut(s)	468, 626, 903, 939, 984, 1223, 1257
MspCI	CTTAAG	1 cut(s)	938
MspI	CCGG	1 cut(s)	93
MspR9I	CCNGG	3 cut(s)	237, 586, 690
MunI	CAATTG	1 cut(s)	591
MvaI	CCWGG	3 cut(s)	237, 586, 690
MwoI	GCNNNNNNNGC	7 cut(s)	173, 204, 249, 258, 267, 303, 407
NcoI	CCATGG	2 cut(s)	144, 695
NdeII	GATC	6 cut(s)	67, 342, 562, 1030, 1213, 1240
NlaIII	CATG	7 cut(s)	148, 638, 655, 699, 1039, 1046, 1201
NlaIV	GGNNCC	1 cut(s)	314
NmuCI	GTSAC	2 cut(s)	780, 1045
NsiI	ATGCAT	1 cut(s)	581
NspI	RCATGY	1 cut(s)	1046
PagI	TCATGA	1 cut(s)	1035
PciI	ACATGT	1 cut(s)	1042
PdmI	GAANNNNTTC	1 cut(s)	1321
PfeI	GAWTC	3 cut(s)	700, 1106, 1151
Pfl23II	CGTACG	1 cut(s)	247
PfoI	TCCNGGA	1 cut(s)	584
PkrI	GCNGC	5 cut(s)	242, 260, 487, 490, 822
PleI	GAGTC	2 cut(s)	412, 731
PpsI	GAGTC	2 cut(s)	412, 731
PscI	ACATGT	1 cut(s)	1042
PshBI	ATTAAT	1 cut(s)	1257
Psp1406I	AACGTT	1 cut(s)	58
Psp6I	CCWGG	3 cut(s)	235, 584, 688
PspEI	GGTNACC	1 cut(s)	780
PspGI	CCWGG	3 cut(s)	235, 584, 688
PspLI	CGTACG	1 cut(s)	247
PspN4I	GGNNCC	1 cut(s)	314
PspPI	GGNCC	4 cut(s)	95, 312, 692, 1119
PstI	CTGCAG	1 cut(s)	260
PsuI	RGATCY	2 cut(s)	67, 1240
RsaI	GTAC	5 cut(s)	172, 227, 249, 301, 1235
RsaNI	GTAC	5 cut(s)	171, 226, 248, 300, 1234
SaqAI	TTAA	7 cut(s)	468, 626, 903, 939, 984, 1223, 1257
SatI	GCNGC	5 cut(s)	241, 259, 486, 489, 821
Sau3AI	GATC	6 cut(s)	67, 342, 562, 1030, 1213, 1240
Sau96I	GGNCC	4 cut(s)	95, 312, 692, 1119
ScaI	AGTACT	1 cut(s)	1235
SchI	GAGTC	2 cut(s)	413, 731
ScrFI	CCNGG	3 cut(s)	237, 586, 690
SfaNI	GCATC	3 cut(s)	227, 588, 1159
SfcI	CTRYAG	1 cut(s)	256
SinI	GGWCC	1 cut(s)	95
SmlI	CTYRAG	3 cut(s)	380, 743, 938
SmoI	CTYRAG	3 cut(s)	380, 743, 938
Sse9I	AATT	8 cut(s)	373, 445, 591, 627, 907, 1254, 1289, 1374
SsiI	CCGC	2 cut(s)	4, 156
SspMI	CTAG	2 cut(s)	777, 1116
StyD4I	CCNGG	3 cut(s)	235, 584, 688
StyI	CCWWGG	3 cut(s)	144, 695, 1296
TaaI	ACNGT	2 cut(s)	884, 1135
TaiI	ACGT	2 cut(s)	50, 61
TaqI	TCGA	4 cut(s)	345, 556, 1101, 1325
TasI	AATT	8 cut(s)	373, 445, 591, 627, 907, 1254, 1289, 1374
TatI	WGTACW	2 cut(s)	225, 1233
TfiI	GAWTC	3 cut(s)	700, 1106, 1151
Tru1I	TTAA	7 cut(s)	468, 626, 903, 939, 984, 1223, 1257
Tru9I	TTAA	7 cut(s)	468, 626, 903, 939, 984, 1223, 1257
TscAI	CASTG	2 cut(s)	130, 298
TseFI	GTSAC	2 cut(s)	780, 1045
TseI	GCWGC	5 cut(s)	240, 258, 485, 488, 820
Tsp45I	GTSAC	2 cut(s)	780, 1045
TspDTI	ATGAA	7 cut(s)	65, 596, 651, 660, 668, 1052, 1098
TspGWI	ACGGA	3 cut(s)	235, 255, 629
TspRI	CASTG	2 cut(s)	130, 298
Vha464I	CTTAAG	1 cut(s)	938
VpaK11BI	GGWCC	1 cut(s)	95
VspI	ATTAAT	1 cut(s)	1257
XapI	RAATTY	3 cut(s)	907, 1289, 1374
XceI	RCATGY	1 cut(s)	1046
XcmI	CCANNNNNNNNNTGG	1 cut(s)	686
XmnI	GAANNNNTTC	1 cut(s)	1321
XspI	CTAG	2 cut(s)	777, 1116
ZraI	GACGTC	1 cut(s)	48
ZrmI	AGTACT	1 cut(s)	1235
Zsp2I	ATGCAT	1 cut(s)	581

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.