Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0005643

Physical Location & Seq

Genomic Coordinates Reverse (-)

1594053 .. 1595923

Gene Structure 1871 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G05430.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 810 bp

ATGGCTATGGCCGCTTTAAATCAGCTTTTTGTTGTCCTAGCCTCAAAACCCGAGCAGGAGAAGATCACGCCTGAAGAGTCTAGAGCTATTGTCTCTTGCCATTTCAAAGCTTTGTGGACAGCTGGTTTTGCGTCTGGTGTAGGGGGAGGTTTAACTTGGCAAGTGACAAAGAAGTTGAAAAAGCCGAAAGGACTTGAGAGGGTTGCTCTTGCAGCTGGAGTTGCTGCTTCGACTTTTGTTGTTGCTTGGAATTGGTCAAGTTCCAAATATGCAGTTTCATCCCTTGATCATATCCTTAGTCAAGATGCTACACGAATGCAGAAAGAGCTTGTGAATGTCTTAGTCAGGTCCAACAGAGGTGAAGCTTGGAGATGGCAACTTATGTCCAAGCATTTCTACCCTGAATCTGTTTACGGTGATGAAGGAGACAAACCTCAAATGCGTTGGCGTAGACGAACCACTTTCACTGAAATTGCCTCTTCTTATGATGATGTCAATGCAACCAAATCTCAGAGAAACCCCAATGGCTTACCAAACCCTTCTCATCGAAGAATTTCCGGTGGATCTGATGCTTCAAAGACTAAACAGACGCTCCAAAATAGCTCTGGAAACTCGGATGGCGAAATGGCGGAAGAAGATGTTCTTGACATTGTATTTGGTTGTTCAGAAGCAACAGAGAGCATTCCTGCGCCAGTTATTTCAAAACTTGCTAGCAAAACGCAAACTCGCAAACAGAAAAGAGCTCAACGGAGACAGAGGCTTAAAAACCGTGAAGCTTCCACAAATACTCCTCAGTATGAACTTGCATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

269

Amino Acids

29.86

Weight (kDa)

9.76

Isoelectric Point (pI)

54.9

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0005643)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G05430
fragaria_vesca	FvH4_4g16290 FvH4_4g16290 FvH4_4g16290
malus_domestica	MD07G1251800.v1.1 MD13G1194600.v1.1 MD13G1194700.v1.1 MD13G1194800.v1.1 MD16G1195500.v1.1
prunus_persica	Prupe.1G015500_v2.0.a1 Prupe.1G015500_v2.0.a1 Prupe.1G015500_v2.0.a1 Prupe.1G015500_v2.0.a1 Prupe.1G015500_v2.0.a1 Prupe.1G015500_v2.0.a1
pyrus_communis	pycom13g16700 pycom16g16470
rosa_chinensis	RchiOBHm_Chr4g0415951
rosa_laevigata	RLG00000008026
rosa_multiflora	Rmu_sc0005415.1_g000004 Rmu_sc0005922.1_g000001
rosa_roxburghii	Rroxscaffold_5G00359830
rosa_rugosa	Rorug04G0137200
rosa_samantha	Rh4AG199600 Rh4BG197100 Rh4CG210600 Rh4DG197400
rosa_wichuraiana	Rw4G016920

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	451
AciI	CCGC	2 cut(s)	12, 629
AclWI	GGATC	1 cut(s)	571
AcoI	YGGCCR	1 cut(s)	9
AcsI	RAATTY	1 cut(s)	552
AcuI	CTGAAG	1 cut(s)	93
AgsI	TTSAA	4 cut(s)	106, 178, 576, 702
Alw21I	GWGCWC	1 cut(s)	745
Alw26I	GTCTC	3 cut(s)	97, 420, 745
AlwI	GGATC	1 cut(s)	571
Ama87I	CYCGRG	1 cut(s)	50
AoxI	GGCC	1 cut(s)	9
ApeKI	GCWGC	2 cut(s)	212, 224
ApoI	RAATTY	1 cut(s)	552
ArsI	GACNNNNNNTTYG	2 cut(s)	638, 670
Asp700I	GAANNNNTTC	2 cut(s)	553, 639
AspLEI	GCGC	1 cut(s)	691
AspS9I	GGNCC	1 cut(s)	348
AsuHPI	GGTGA	2 cut(s)	371, 428
AsuNHI	GCTAGC	1 cut(s)	710
AvaI	CYCGRG	1 cut(s)	50
AvaII	GGWCC	1 cut(s)	348
BanII	GRGCYC	1 cut(s)	745
Bbv12I	GWGCWC	1 cut(s)	745
BbvI	GCAGC	2 cut(s)	211, 224
BccI	CCATC	2 cut(s)	366, 611
BclI	TGATCA	1 cut(s)	286
BcoDI	GTCTC	3 cut(s)	97, 420, 745
BfaI	CTAG	3 cut(s)	38, 81, 711
BisI	GCNGC	3 cut(s)	12, 213, 225
BlsI	GCNGC	3 cut(s)	13, 214, 226
Bme18I	GGWCC	1 cut(s)	348
BmeT110I	CYCGRG	1 cut(s)	50
BmgT120I	GGNCC	1 cut(s)	348
BmsI	GCATC	2 cut(s)	295, 559
BmtI	GCTAGC	1 cut(s)	714
BplI	GAGNNNNNCTC	2 cut(s)	190, 222
BpmI	CTGGAG	1 cut(s)	237
BpuEI	CTTGAG	1 cut(s)	215
BsaWI	WCCGGW	1 cut(s)	557
BsaXI	ACNNNNNCTCC	4 cut(s)	576, 606, 772, 802
Bse1I	ACTGG	1 cut(s)	692
BseGI	GGATG	2 cut(s)	278, 622
BseMII	CTCAG	2 cut(s)	524, 806
BseNI	ACTGG	1 cut(s)	692
BseRI	GAGGAG	1 cut(s)	780
BseXI	GCAGC	2 cut(s)	211, 224
BshFI	GGCC	1 cut(s)	11
BsiHKAI	GWGCWC	1 cut(s)	745
BsiHKCI	CYCGRG	1 cut(s)	50
BsiSI	CCGG	1 cut(s)	558
BsmAI	GTCTC	3 cut(s)	97, 420, 745
BsmI	GAATGC	2 cut(s)	321, 681
BsnI	GGCC	1 cut(s)	11
BsoBI	CYCGRG	1 cut(s)	50
Bsp1286I	GDGCHC	1 cut(s)	745
Bsp143I	GATC	3 cut(s)	63, 286, 563
BspACI	CCGC	2 cut(s)	12, 629
BspANI	GGCC	1 cut(s)	11
BspCNI	CTCAG	2 cut(s)	523, 805
BspOI	GCTAGC	1 cut(s)	714
BspPI	GGATC	1 cut(s)	571
BsrI	ACTGG	1 cut(s)	692
BssMI	GATC	3 cut(s)	63, 286, 563
Bst4CI	ACNGT	2 cut(s)	416, 770
Bst6I	CTCTTC	2 cut(s)	69, 484
BstC8I	GCNNGC	1 cut(s)	712
BstDEI	CTNAG	4 cut(s)	296, 340, 510, 792
BstF5I	GGATG	2 cut(s)	278, 622
BstHHI	GCGC	1 cut(s)	691
BstKTI	GATC	3 cut(s)	66, 289, 566
BstMAI	GTCTC	3 cut(s)	97, 420, 745
BstMBI	GATC	3 cut(s)	63, 286, 563
BstMWI	GCNNNNNNNGC	5 cut(s)	11, 128, 212, 221, 325
BstV1I	GCAGC	2 cut(s)	211, 224
BstX2I	RGATCY	1 cut(s)	563
BstYI	RGATCY	1 cut(s)	563
BsuRI	GGCC	1 cut(s)	11
BtsCI	GGATG	2 cut(s)	278, 622
BtsIMutI	CAGTG	1 cut(s)	465
Cac8I	GCNNGC	1 cut(s)	712
CfoI	GCGC	1 cut(s)	691
Cfr13I	GGNCC	1 cut(s)	348
CseI	GACGC	2 cut(s)	120, 598
DdeI	CTNAG	4 cut(s)	296, 340, 510, 792
DpnI	GATC	3 cut(s)	65, 288, 565
DpnII	GATC	3 cut(s)	63, 286, 563
DraI	TTTAAA	1 cut(s)	18
EaeI	YGGCCR	1 cut(s)	9
Eam1104I	CTCTTC	2 cut(s)	69, 484
EarI	CTCTTC	2 cut(s)	69, 484
EciI	GGCGGA	1 cut(s)	644
Ecl136II	GAGCTC	1 cut(s)	743
Eco24I	GRGCYC	1 cut(s)	745
Eco47I	GGWCC	1 cut(s)	348
Eco53kI	GAGCTC	1 cut(s)	743
Eco57I	CTGAAG	1 cut(s)	93
Eco88I	CYCGRG	1 cut(s)	50
EcoICRI	GAGCTC	1 cut(s)	743
EcoT38I	GRGCYC	1 cut(s)	745
FaiI	YATR	7 cut(s)	8, 270, 291, 383, 486, 798, 808
FalI	AAGNNNNNCTT	2 cut(s)	627, 659
FbaI	TGATCA	1 cut(s)	286
FblI	GTMKAC	1 cut(s)	451
Fnu4HI	GCNGC	3 cut(s)	12, 213, 225
FokI	GGATG	2 cut(s)	265, 629
FriOI	GRGCYC	1 cut(s)	745
Fsp4HI	GCNGC	3 cut(s)	12, 213, 225
FspBI	CTAG	3 cut(s)	38, 81, 711
GlaI	GCGC	1 cut(s)	690
GluI	GCNGC	3 cut(s)	12, 213, 225
GsuI	CTGGAG	1 cut(s)	237
HaeIII	GGCC	1 cut(s)	11
HapII	CCGG	1 cut(s)	558
HgaI	GACGC	2 cut(s)	120, 598
HhaI	GCGC	1 cut(s)	691
Hin6I	GCGC	1 cut(s)	689
HinP1I	GCGC	1 cut(s)	689
HindIII	AAGCTT	3 cut(s)	108, 363, 774
HinfI	GANTC	2 cut(s)	77, 404
HpaII	CCGG	1 cut(s)	558
HphI	GGTGA	2 cut(s)	371, 428
Hpy166II	GTNNAC	3 cut(s)	117, 412, 452
Hpy188I	TCNGA	4 cut(s)	513, 568, 616, 667
Hpy188III	TCNNGA	4 cut(s)	81, 302, 606, 644
Hpy8I	GTNNAC	3 cut(s)	117, 412, 452
HpyAV	CCTTC	2 cut(s)	416, 549
HpyCH4III	ACNGT	2 cut(s)	416, 770
HpyCH4V	TGCA	5 cut(s)	212, 272, 319, 500, 806
HpyF10VI	GCNNNNNNNGC	5 cut(s)	11, 128, 212, 221, 325
HpyF3I	CTNAG	4 cut(s)	296, 340, 510, 792
HspAI	GCGC	1 cut(s)	689
Ksp22I	TGATCA	1 cut(s)	286
Kzo9I	GATC	3 cut(s)	63, 286, 563
LmnI	GCTCC	1 cut(s)	597
Lsp1109I	GCAGC	2 cut(s)	211, 224
LweI	GCATC	2 cut(s)	295, 559
MaeI	CTAG	3 cut(s)	38, 81, 711
MaeIII	GTNAC	1 cut(s)	163
MalI	GATC	3 cut(s)	65, 288, 565
MboI	GATC	3 cut(s)	63, 286, 563
MboII	GAAGA	6 cut(s)	73, 86, 471, 561, 644, 647
MflI	RGATCY	1 cut(s)	563
MhlI	GDGCHC	1 cut(s)	745
MluCI	AATT	3 cut(s)	250, 471, 552
MlyI	GAGTC	1 cut(s)	86
MmeI	TCCRAC	1 cut(s)	375
MnlI	CCTC	8 cut(s)	52, 140, 192, 350, 444, 487, 750, 801
MroXI	GAANNNNTTC	2 cut(s)	553, 639
MseI	TTAA	3 cut(s)	17, 152, 762
MspA1I	CMGCKG	2 cut(s)	122, 215
MspI	CCGG	1 cut(s)	558
Mva1269I	GAATGC	2 cut(s)	321, 681
MwoI	GCNNNNNNNGC	5 cut(s)	11, 128, 212, 221, 325
NdeII	GATC	3 cut(s)	63, 286, 563
NheI	GCTAGC	1 cut(s)	710
NmuCI	GTSAC	1 cut(s)	163
PctI	GAATGC	2 cut(s)	321, 681
PdmI	GAANNNNTTC	2 cut(s)	553, 639
PfeI	GAWTC	1 cut(s)	404
PkrI	GCNGC	3 cut(s)	13, 214, 226
PleI	GAGTC	1 cut(s)	85
PpsI	GAGTC	1 cut(s)	85
Psp124BI	GAGCTC	1 cut(s)	745
PspPI	GGNCC	1 cut(s)	348
PsuI	RGATCY	1 cut(s)	563
PvuII	CAGCTG	2 cut(s)	122, 215
SacI	GAGCTC	1 cut(s)	745
SaqAI	TTAA	3 cut(s)	17, 152, 762
SatI	GCNGC	3 cut(s)	12, 213, 225
Sau3AI	GATC	3 cut(s)	63, 286, 563
Sau96I	GGNCC	1 cut(s)	348
SchI	GAGTC	1 cut(s)	86
SduI	GDGCHC	1 cut(s)	745
SfaNI	GCATC	2 cut(s)	295, 559
SinI	GGWCC	1 cut(s)	348
SmlI	CTYRAG	1 cut(s)	194
SmoI	CTYRAG	1 cut(s)	194
Sse9I	AATT	3 cut(s)	250, 471, 552
SsiI	CCGC	2 cut(s)	12, 629
SspMI	CTAG	3 cut(s)	38, 81, 711
SstI	GAGCTC	1 cut(s)	745
TaaI	ACNGT	2 cut(s)	416, 770
TaqI	TCGA	2 cut(s)	230, 547
TasI	AATT	3 cut(s)	250, 471, 552
TauI	GCSGC	1 cut(s)	14
TfiI	GAWTC	1 cut(s)	404
Tru1I	TTAA	3 cut(s)	17, 152, 762
Tru9I	TTAA	3 cut(s)	17, 152, 762
TscAI	CASTG	1 cut(s)	472
TseFI	GTSAC	1 cut(s)	163
TseI	GCWGC	2 cut(s)	212, 224
Tsp45I	GTSAC	1 cut(s)	163
TspDTI	ATGAA	2 cut(s)	267, 435
TspGWI	ACGGA	1 cut(s)	763
TspRI	CASTG	1 cut(s)	472
VpaK11BI	GGWCC	1 cut(s)	348
XapI	RAATTY	1 cut(s)	552
XbaI	TCTAGA	1 cut(s)	80
XcmI	CCANNNNNNNNNTGG	1 cut(s)	602
XmiI	GTMKAC	1 cut(s)	451
XmnI	GAANNNNTTC	2 cut(s)	553, 639
XspI	CTAG	3 cut(s)	38, 81, 711

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.