Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0005922.1

Orthogroup ID

OG0005643

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 1934

Gene Structure 1934 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0005922.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 569 bp

ccttagattcatgtgtggaacatattcttgcactggatgggagtcggatgcaggcagagttggcaactataatggtgacaaaacatcagaacgatcgtcagaggatgcagcttatctctaagcagttctattgtgaggaggtttttgatgattcaacctcggaacgcccaaaaataaggtggcgttatcggaattactttagtgataatattgctcatggtcaaagaacacatgacagcaactctcaatctgattcagacagtgtctcccatggtgactatcacaattcctttgatggtgattcccaagacacccaaagtgacacccagaatgactctaacaaaagacggatcaattttgaccctagacgagttcctatgaactccagtgttggtgcaacggcagacccttttgaatatatcttcggttatccagcaccaaaggaggagcttcatcttccagacacctcgagtctttccccaaaagcacaggctcgtaaccgtagacgatctcaccgcaagcgtcgtacgcatcatcaggaagacgtatcaaacctccaacatgtgtag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

188

Amino Acids

21.86

Weight (kDa)

6.63

Isoelectric Point (pI)

74.17

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005643)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G05430
fragaria_vesca	FvH4_4g16290 FvH4_4g16290 FvH4_4g16290
malus_domestica	MD07G1251800.v1.1 MD13G1194600.v1.1 MD13G1194700.v1.1 MD13G1194800.v1.1 MD16G1195500.v1.1
prunus_persica	Prupe.1G015500_v2.0.a1 Prupe.1G015500_v2.0.a1 Prupe.1G015500_v2.0.a1 Prupe.1G015500_v2.0.a1 Prupe.1G015500_v2.0.a1 Prupe.1G015500_v2.0.a1
pyrus_communis	pycom13g16700 pycom16g16470
rosa_chinensis	RchiOBHm_Chr4g0415951
rosa_laevigata	RLG00000008026
rosa_multiflora	Rmu_sc0005415.1_g000004 Rmu_sc0005922.1_g000001
rosa_roxburghii	Rroxscaffold_5G00359830
rosa_rugosa	Rorug04G0137200
rosa_samantha	Rh4AG199600 Rh4BG197100 Rh4CG210600 Rh4DG197400
rosa_wichuraiana	Rw4G016920

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	504
AciI	CCGC	1 cut(s)	516
AclWI	GGATC	1 cut(s)	358
AfaI	GTAC	1 cut(s)	528
AflIII	ACRYGT	1 cut(s)	561
AgsI	TTSAA	2 cut(s)	155, 415
AluBI	AGCT	2 cut(s)	111, 450
AluI	AGCT	2 cut(s)	111, 450
Alw26I	GTCTC	1 cut(s)	270
AlwI	GGATC	1 cut(s)	358
Ama87I	CYCGRG	1 cut(s)	468
ApeKI	GCWGC	1 cut(s)	108
Asp700I	GAANNNNTTC	1 cut(s)	23
AsuHPI	GGTGA	4 cut(s)	87, 286, 310, 505
AvaI	CYCGRG	1 cut(s)	468
BbsI	GAAGAC	1 cut(s)	548
BbvI	GCAGC	1 cut(s)	120
BccI	CCATC	2 cut(s)	31, 289
BceAI	ACGGC	1 cut(s)	416
BcoDI	GTCTC	1 cut(s)	270
BfaI	CTAG	1 cut(s)	365
BisI	GCNGC	1 cut(s)	109
BlsI	GCNGC	1 cut(s)	110
BmeT110I	CYCGRG	1 cut(s)	468
BmsI	GCATC	3 cut(s)	38, 95, 540
BpiI	GAAGAC	1 cut(s)	548
BpmI	CTGGAG	1 cut(s)	369
BsaJI	CCNNGG	2 cut(s)	158, 270
BsaXI	ACNNNNNCTCC	2 cut(s)	250, 280
Bse1I	ACTGG	2 cut(s)	38, 386
BseDI	CCNNGG	2 cut(s)	158, 270
BseGI	GGATG	3 cut(s)	42, 53, 110
BseNI	ACTGG	2 cut(s)	38, 386
BseRI	GAGGAG	2 cut(s)	151, 460
BseXI	GCAGC	1 cut(s)	120
Bsh1285I	CGRYCG	1 cut(s)	96
BsiEI	CGRYCG	1 cut(s)	96
BsiHKCI	CYCGRG	1 cut(s)	468
BsiWI	CGTACG	1 cut(s)	526
BsmAI	GTCTC	1 cut(s)	270
BsoBI	CYCGRG	1 cut(s)	468
Bsp143I	GATC	3 cut(s)	93, 350, 508
Bsp19I	CCATGG	1 cut(s)	270
BspACI	CCGC	1 cut(s)	516
BspPI	GGATC	1 cut(s)	358
BsrI	ACTGG	2 cut(s)	38, 386
BssECI	CCNNGG	2 cut(s)	158, 270
BssMI	GATC	3 cut(s)	93, 350, 508
BssT1I	CCWWGG	1 cut(s)	270
Bst4CI	ACNGT	2 cut(s)	262, 502
BstC8I	GCNNGC	2 cut(s)	53, 520
BstDEI	CTNAG	2 cut(s)	3, 119
BstDSI	CCRYGG	1 cut(s)	270
BstF5I	GGATG	3 cut(s)	42, 53, 110
BstKTI	GATC	3 cut(s)	96, 353, 511
BstMAI	GTCTC	1 cut(s)	270
BstMBI	GATC	3 cut(s)	93, 350, 508
BstMCI	CGRYCG	1 cut(s)	96
BstMWI	GCNNNNNNNGC	2 cut(s)	61, 528
BstNSI	RCATGY	1 cut(s)	565
BstV1I	GCAGC	1 cut(s)	120
BstV2I	GAAGAC	1 cut(s)	548
BtgI	CCRYGG	1 cut(s)	270
BtsCI	GGATG	3 cut(s)	42, 53, 110
BtsIMutI	CAGTG	3 cut(s)	31, 267, 393
Cac8I	GCNNGC	2 cut(s)	53, 520
CseI	GACGC	1 cut(s)	511
Csp6I	GTAC	1 cut(s)	527
CviAII	CATG	5 cut(s)	11, 217, 232, 271, 562
CviJI	RGCY	3 cut(s)	111, 450, 493
CviKI_1	RGCY	3 cut(s)	111, 450, 493
CviQI	GTAC	1 cut(s)	527
DdeI	CTNAG	2 cut(s)	3, 119
DpnI	GATC	3 cut(s)	95, 352, 510
DpnII	GATC	3 cut(s)	93, 350, 508
Eco130I	CCWWGG	1 cut(s)	270
Eco88I	CYCGRG	1 cut(s)	468
EcoT14I	CCWWGG	1 cut(s)	270
ErhI	CCWWGG	1 cut(s)	270
FaeI	CATG	5 cut(s)	14, 220, 235, 274, 565
FaiI	YATR	9 cut(s)	12, 23, 70, 218, 233, 272, 379, 419, 563
FatI	CATG	5 cut(s)	10, 216, 231, 270, 561
FblI	GTMKAC	1 cut(s)	504
Fnu4HI	GCNGC	1 cut(s)	109
FokI	GGATG	3 cut(s)	49, 60, 117
Fsp4HI	GCNGC	1 cut(s)	109
FspBI	CTAG	1 cut(s)	365
GluI	GCNGC	1 cut(s)	109
GsuI	CTGGAG	1 cut(s)	369
HgaI	GACGC	1 cut(s)	511
Hin1II	CATG	5 cut(s)	14, 220, 235, 274, 565
HinfI	GANTC	7 cut(s)	7, 42, 151, 253, 301, 334, 471
HphI	GGTGA	4 cut(s)	87, 286, 310, 505
Hpy166II	GTNNAC	1 cut(s)	505
Hpy188I	TCNGA	7 cut(s)	47, 89, 101, 162, 191, 252, 258
Hpy188III	TCNNGA	2 cut(s)	460, 538
Hpy8I	GTNNAC	1 cut(s)	505
Hpy99I	CGWCG	1 cut(s)	527
HpyCH4III	ACNGT	2 cut(s)	262, 502
HpyCH4IV	ACGT	1 cut(s)	545
HpyCH4V	TGCA	4 cut(s)	31, 51, 108, 397
HpyF10VI	GCNNNNNNNGC	2 cut(s)	61, 528
HpyF3I	CTNAG	2 cut(s)	3, 119
HpySE526I	ACGT	1 cut(s)	545
Hsp92II	CATG	5 cut(s)	14, 220, 235, 274, 565
Kzo9I	GATC	3 cut(s)	93, 350, 508
LmnI	GCTCC	1 cut(s)	447
LpnPI	CCDG	8 cut(s)	19, 37, 340, 399, 446, 473, 475, 523
Lsp1109I	GCAGC	1 cut(s)	120
LweI	GCATC	3 cut(s)	38, 95, 540
MaeI	CTAG	1 cut(s)	365
MaeII	ACGT	1 cut(s)	545
MaeIII	GTNAC	4 cut(s)	75, 274, 319, 496
MalI	GATC	3 cut(s)	95, 352, 510
MboI	GATC	3 cut(s)	93, 350, 508
MboII	GAAGA	3 cut(s)	414, 448, 553
MluCI	AATT	3 cut(s)	192, 285, 354
MlyI	GAGTC	3 cut(s)	51, 328, 480
MmeI	TCCRAC	1 cut(s)	25
MnlI	CCTC	7 cut(s)	95, 129, 132, 168, 438, 477, 565
MroXI	GAANNNNTTC	1 cut(s)	23
MwoI	GCNNNNNNNGC	2 cut(s)	61, 528
NcoI	CCATGG	1 cut(s)	270
NdeII	GATC	3 cut(s)	93, 350, 508
NlaIII	CATG	5 cut(s)	14, 220, 235, 274, 565
NmuCI	GTSAC	3 cut(s)	75, 274, 319
NspI	RCATGY	1 cut(s)	565
PaeR7I	CTCGAG	1 cut(s)	468
PciI	ACATGT	1 cut(s)	561
PdmI	GAANNNNTTC	1 cut(s)	23
PfeI	GAWTC	4 cut(s)	7, 151, 253, 301
Pfl23II	CGTACG	1 cut(s)	526
PflFI	GACNNNGTC	1 cut(s)	262
PkrI	GCNGC	1 cut(s)	110
Ple19I	CGATCG	1 cut(s)	96
PleI	GAGTC	3 cut(s)	50, 328, 479
PpsI	GAGTC	3 cut(s)	50, 328, 479
PscI	ACATGT	1 cut(s)	561
PspLI	CGTACG	1 cut(s)	526
PspXI	VCTCGAGB	1 cut(s)	468
PsyI	GACNNNGTC	1 cut(s)	262
PvuI	CGATCG	1 cut(s)	96
RsaI	GTAC	1 cut(s)	528
RsaNI	GTAC	1 cut(s)	527
SatI	GCNGC	1 cut(s)	109
Sau3AI	GATC	3 cut(s)	93, 350, 508
SchI	GAGTC	3 cut(s)	51, 328, 480
SetI	ASST	8 cut(s)	113, 143, 160, 181, 452, 469, 548, 557
SfaNI	GCATC	3 cut(s)	38, 95, 540
Sfr274I	CTCGAG	1 cut(s)	468
SlaI	CTCGAG	1 cut(s)	468
SmlI	CTYRAG	1 cut(s)	468
SmoI	CTYRAG	1 cut(s)	468
Sse9I	AATT	3 cut(s)	192, 285, 354
SsiI	CCGC	1 cut(s)	516
SspI	AATATT	1 cut(s)	210
SspMI	CTAG	1 cut(s)	365
StyI	CCWWGG	1 cut(s)	270
TaaI	ACNGT	2 cut(s)	262, 502
TaiI	ACGT	1 cut(s)	548
TaqI	TCGA	1 cut(s)	469
TasI	AATT	3 cut(s)	192, 285, 354
TfiI	GAWTC	4 cut(s)	7, 151, 253, 301
TscAI	CASTG	3 cut(s)	38, 267, 393
TseFI	GTSAC	3 cut(s)	75, 274, 319
TseI	GCWGC	1 cut(s)	108
Tsp45I	GTSAC	3 cut(s)	75, 274, 319
TspDTI	ATGAA	2 cut(s)	394, 442
TspGWI	ACGGA	1 cut(s)	363
TspRI	CASTG	3 cut(s)	38, 267, 393
Tth111I	GACNNNGTC	1 cut(s)	262
XceI	RCATGY	1 cut(s)	565
XcmI	CCANNNNNNNNNTGG	1 cut(s)	176
XhoI	CTCGAG	1 cut(s)	468
XmiI	GTMKAC	1 cut(s)	504
XmnI	GAANNNNTTC	1 cut(s)	23
XspI	CTAG	1 cut(s)	365

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.