Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0005643

Physical Location & Seq

Genomic Coordinates Forward (+)

40792096 .. 40795842

Gene Structure 3747 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ38613

Sequence Viewer

CDS Protein Promoter (2k)

Length: 807 bp

ATGGGTGACGCTTTGTTTGAGCTGGAGAACAATCTCAGGTCCAAACAGGCGAAGTTGACGCCTGAAGAAGTAAGGGTTCTTTCAGATTGCAAGTCTAAGGCGATGAGGGAGTTCACATTCGGAGGTCTTGCAGCTGGTGTTGTAGCCTGGACAGCATCATCAAAGCTCAGTAAGATGATCCGACTTAACCTTTCGGGAGGAGCTGCTGCGATGTTTGGACTGTGGAGATTTTCTAGAGCCTTAGATTCATGTGTGGAACATATTCTTGCACTGGATGGGAGTCCGATGCAGGCAGAGTTGGCAACTATAATGGTGACAAAACATCAGAACGATCGTCAGAGGATGCAGCTTATCTCTAAGCAGTTCTATTGTGAGGAGGTTTTTGATGATTCAACCTCGGAACGCCCAAAAATAAGGTGGCGTTATCGGAATTACTTTAGTGATAATATTGCTCATGGTCAAAGAACACATGACAGCAACTCTCAATCTGATTCAGACACTGTCTCCCATGGTGACTATCACAATTCCTTTGATGGTGATTCCCAAGACACCCAAAGTGACACCCAGAATGACTTTAACAAAAGACGGATCAATTTTGACCCTAGACGAGTTCCTATGAACTCCAGTGTTGGTGCAACGGCAGACCCTTTTGAATATATCTTCGGTTATCCAGCACCAAAGGAGGAGCTTCATCTTCCAGACACCTCGAGTCTTTCCCCGAAAGCACAGGCTCGTAACCGTAGACGATCTCACCGCAAGCGTCGTACGCATCATCAGGAAGACGTATCAGACCTCCAACATGTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

268

Amino Acids

30.59

Weight (kDa)

7.81

Isoelectric Point (pI)

61.61

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005643)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G05430
fragaria_vesca	FvH4_4g16290 FvH4_4g16290 FvH4_4g16290
malus_domestica	MD07G1251800.v1.1 MD13G1194600.v1.1 MD13G1194700.v1.1 MD13G1194800.v1.1 MD16G1195500.v1.1
prunus_persica	Prupe.1G015500_v2.0.a1 Prupe.1G015500_v2.0.a1 Prupe.1G015500_v2.0.a1 Prupe.1G015500_v2.0.a1 Prupe.1G015500_v2.0.a1 Prupe.1G015500_v2.0.a1
pyrus_communis	pycom13g16700 pycom16g16470
rosa_chinensis	RchiOBHm_Chr4g0415951
rosa_laevigata	RLG00000008026
rosa_multiflora	Rmu_sc0005415.1_g000004 Rmu_sc0005922.1_g000001
rosa_roxburghii	Rroxscaffold_5G00359830
rosa_rugosa	Rorug04G0137200
rosa_samantha	Rh4AG199600 Rh4BG197100 Rh4CG210600 Rh4DG197400
rosa_wichuraiana	Rw4G016920

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	742
AciI	CCGC	1 cut(s)	754
AclWI	GGATC	2 cut(s)	172, 596
AcuI	CTGAAG	1 cut(s)	84
AcyI	GRCGYC	1 cut(s)	59
AfaI	GTAC	1 cut(s)	766
AflIII	ACRYGT	1 cut(s)	799
AgsI	TTSAA	2 cut(s)	393, 653
AjnI	CCWGG	1 cut(s)	146
AluBI	AGCT	6 cut(s)	22, 134, 166, 203, 349, 688
AluI	AGCT	6 cut(s)	22, 134, 166, 203, 349, 688
Alw26I	GTCTC	1 cut(s)	508
AlwI	GGATC	2 cut(s)	172, 596
AlwNI	CAGNNNCTG	1 cut(s)	500
Ama87I	CYCGRG	1 cut(s)	706
ApeKI	GCWGC	4 cut(s)	131, 203, 206, 346
ArsI	GACNNNNNNTTYG	1 cut(s)	31
Asp700I	GAANNNNTTC	1 cut(s)	261
AspS9I	GGNCC	1 cut(s)	39
AsuHPI	GGTGA	5 cut(s)	17, 325, 524, 548, 743
AvaI	CYCGRG	1 cut(s)	706
AvaII	GGWCC	1 cut(s)	39
BbsI	GAAGAC	1 cut(s)	786
BbvI	GCAGC	4 cut(s)	143, 190, 193, 358
BccI	CCATC	2 cut(s)	269, 527
BceAI	ACGGC	1 cut(s)	654
BciT130I	CCWGG	1 cut(s)	148
BcoDI	GTCTC	1 cut(s)	508
BfaI	CTAG	2 cut(s)	234, 603
BisI	GCNGC	4 cut(s)	132, 204, 207, 347
BlsI	GCNGC	4 cut(s)	133, 205, 208, 348
Bme1390I	CCNGG	1 cut(s)	148
Bme18I	GGWCC	1 cut(s)	39
BmeT110I	CYCGRG	1 cut(s)	706
BmgT120I	GGNCC	1 cut(s)	39
BmrFI	CCNGG	1 cut(s)	148
BmsI	GCATC	4 cut(s)	164, 276, 333, 778
BpiI	GAAGAC	1 cut(s)	786
BpmI	CTGGAG	2 cut(s)	44, 607
BsaHI	GRCGYC	1 cut(s)	59
BsaJI	CCNNGG	2 cut(s)	396, 508
BsaXI	ACNNNNNCTCC	2 cut(s)	488, 518
Bse1I	ACTGG	2 cut(s)	276, 624
BseBI	CCWGG	1 cut(s)	148
BseDI	CCNNGG	2 cut(s)	396, 508
BseGI	GGATG	2 cut(s)	280, 348
BseMII	CTCAG	2 cut(s)	49, 181
BseNI	ACTGG	2 cut(s)	276, 624
BseRI	GAGGAG	3 cut(s)	213, 389, 698
BseXI	GCAGC	4 cut(s)	143, 190, 193, 358
Bsh1285I	CGRYCG	1 cut(s)	334
BsiEI	CGRYCG	1 cut(s)	334
BsiHKCI	CYCGRG	1 cut(s)	706
BsiWI	CGTACG	1 cut(s)	764
BsmAI	GTCTC	1 cut(s)	508
BsoBI	CYCGRG	1 cut(s)	706
Bsp143I	GATC	4 cut(s)	177, 331, 588, 746
Bsp19I	CCATGG	1 cut(s)	508
BspACI	CCGC	1 cut(s)	754
BspCNI	CTCAG	2 cut(s)	48, 180
BspPI	GGATC	2 cut(s)	172, 596
BsrI	ACTGG	2 cut(s)	276, 624
BssECI	CCNNGG	2 cut(s)	396, 508
BssMI	GATC	4 cut(s)	177, 331, 588, 746
BssNI	GRCGYC	1 cut(s)	59
BssT1I	CCWWGG	1 cut(s)	508
Bst2UI	CCWGG	1 cut(s)	148
Bst4CI	ACNGT	3 cut(s)	222, 502, 740
BstACI	GRCGYC	1 cut(s)	59
BstC8I	GCNNGC	2 cut(s)	291, 758
BstDEI	CTNAG	5 cut(s)	35, 96, 167, 241, 357
BstDSI	CCRYGG	1 cut(s)	508
BstF5I	GGATG	2 cut(s)	280, 348
BstKTI	GATC	4 cut(s)	180, 334, 591, 749
BstMAI	GTCTC	1 cut(s)	508
BstMBI	GATC	4 cut(s)	177, 331, 588, 746
BstMCI	CGRYCG	1 cut(s)	334
BstMWI	GCNNNNNNNGC	3 cut(s)	152, 299, 766
BstNI	CCWGG	1 cut(s)	148
BstNSI	RCATGY	1 cut(s)	803
BstSCI	CCNGG	1 cut(s)	146
BstV1I	GCAGC	4 cut(s)	143, 190, 193, 358
BstV2I	GAAGAC	1 cut(s)	786
BtgI	CCRYGG	1 cut(s)	508
BtgZI	GCGATG	2 cut(s)	116, 224
BtsCI	GGATG	2 cut(s)	280, 348
BtsIMutI	CAGTG	3 cut(s)	269, 498, 631
Cac8I	GCNNGC	2 cut(s)	291, 758
CaiI	CAGNNNCTG	1 cut(s)	500
Cfr13I	GGNCC	1 cut(s)	39
CseI	GACGC	3 cut(s)	17, 67, 749
Csp6I	GTAC	1 cut(s)	765
CviAII	CATG	5 cut(s)	249, 455, 470, 509, 800
CviJI	RGCY	9 cut(s)	22, 134, 146, 166, 203, 239, 349, 688, 731
CviKI_1	RGCY	9 cut(s)	22, 134, 146, 166, 203, 239, 349, 688, 731
CviQI	GTAC	1 cut(s)	765
DdeI	CTNAG	5 cut(s)	35, 96, 167, 241, 357
DpnI	GATC	4 cut(s)	179, 333, 590, 748
DpnII	GATC	4 cut(s)	177, 331, 588, 746
Eco130I	CCWWGG	1 cut(s)	508
Eco47I	GGWCC	1 cut(s)	39
Eco57I	CTGAAG	1 cut(s)	84
Eco88I	CYCGRG	1 cut(s)	706
EcoRII	CCWGG	1 cut(s)	146
EcoT14I	CCWWGG	1 cut(s)	508
ErhI	CCWWGG	1 cut(s)	508
FaeI	CATG	5 cut(s)	252, 458, 473, 512, 803
FaiI	YATR	9 cut(s)	250, 261, 308, 456, 471, 510, 617, 657, 801
FatI	CATG	5 cut(s)	248, 454, 469, 508, 799
FblI	GTMKAC	1 cut(s)	742
Fnu4HI	GCNGC	4 cut(s)	132, 204, 207, 347
FokI	GGATG	2 cut(s)	287, 355
Fsp4HI	GCNGC	4 cut(s)	132, 204, 207, 347
FspBI	CTAG	2 cut(s)	234, 603
GluI	GCNGC	4 cut(s)	132, 204, 207, 347
GsuI	CTGGAG	2 cut(s)	44, 607
HgaI	GACGC	3 cut(s)	17, 67, 749
Hin1I	GRCGYC	1 cut(s)	59
Hin1II	CATG	5 cut(s)	252, 458, 473, 512, 803
HincII	GTYRAC	1 cut(s)	57
HindII	GTYRAC	1 cut(s)	57
HinfI	GANTC	6 cut(s)	245, 280, 389, 491, 539, 709
HphI	GGTGA	5 cut(s)	17, 325, 524, 548, 743
Hpy166II	GTNNAC	3 cut(s)	57, 114, 743
Hpy188III	TCNNGA	4 cut(s)	195, 234, 698, 776
Hpy8I	GTNNAC	3 cut(s)	57, 114, 743
Hpy99I	CGWCG	1 cut(s)	765
HpyCH4III	ACNGT	3 cut(s)	222, 502, 740
HpyCH4IV	ACGT	1 cut(s)	783
HpyCH4V	TGCA	6 cut(s)	90, 131, 269, 289, 346, 635
HpyF10VI	GCNNNNNNNGC	3 cut(s)	152, 299, 766
HpyF3I	CTNAG	5 cut(s)	35, 96, 167, 241, 357
HpySE526I	ACGT	1 cut(s)	783
Hsp92I	GRCGYC	1 cut(s)	59
Hsp92II	CATG	5 cut(s)	252, 458, 473, 512, 803
Kzo9I	GATC	4 cut(s)	177, 331, 588, 746
LmnI	GCTCC	2 cut(s)	200, 685
Lsp1109I	GCAGC	4 cut(s)	143, 190, 193, 358
LweI	GCATC	4 cut(s)	164, 276, 333, 778
MaeI	CTAG	2 cut(s)	234, 603
MaeII	ACGT	1 cut(s)	783
MaeIII	GTNAC	5 cut(s)	5, 313, 512, 557, 734
MalI	GATC	4 cut(s)	179, 333, 590, 748
MboI	GATC	4 cut(s)	177, 331, 588, 746
MboII	GAAGA	4 cut(s)	77, 652, 686, 791
MluCI	AATT	3 cut(s)	430, 523, 592
MlyI	GAGTC	2 cut(s)	289, 718
MmeI	TCCRAC	1 cut(s)	205
MroXI	GAANNNNTTC	1 cut(s)	261
MseI	TTAA	2 cut(s)	186, 576
MspA1I	CMGCKG	1 cut(s)	134
MspR9I	CCNGG	1 cut(s)	148
MvaI	CCWGG	1 cut(s)	148
MwoI	GCNNNNNNNGC	3 cut(s)	152, 299, 766
NcoI	CCATGG	1 cut(s)	508
NdeII	GATC	4 cut(s)	177, 331, 588, 746
NlaIII	CATG	5 cut(s)	252, 458, 473, 512, 803
NmuCI	GTSAC	4 cut(s)	5, 313, 512, 557
NspI	RCATGY	1 cut(s)	803
PaeR7I	CTCGAG	1 cut(s)	706
PciI	ACATGT	1 cut(s)	799
PdmI	GAANNNNTTC	1 cut(s)	261
PfeI	GAWTC	4 cut(s)	245, 389, 491, 539
Pfl23II	CGTACG	1 cut(s)	764
PflFI	GACNNNGTC	1 cut(s)	500
PkrI	GCNGC	4 cut(s)	133, 205, 208, 348
Ple19I	CGATCG	1 cut(s)	334
PleI	GAGTC	2 cut(s)	288, 717
PpsI	GAGTC	2 cut(s)	288, 717
PscI	ACATGT	1 cut(s)	799
Psp6I	CCWGG	1 cut(s)	146
PspGI	CCWGG	1 cut(s)	146
PspLI	CGTACG	1 cut(s)	764
PspPI	GGNCC	1 cut(s)	39
PspXI	VCTCGAGB	1 cut(s)	706
PstNI	CAGNNNCTG	1 cut(s)	500
PsyI	GACNNNGTC	1 cut(s)	500
PvuI	CGATCG	1 cut(s)	334
PvuII	CAGCTG	1 cut(s)	134
RsaI	GTAC	1 cut(s)	766
RsaNI	GTAC	1 cut(s)	765
SaqAI	TTAA	2 cut(s)	186, 576
SatI	GCNGC	4 cut(s)	132, 204, 207, 347
Sau3AI	GATC	4 cut(s)	177, 331, 588, 746
Sau96I	GGNCC	1 cut(s)	39
SchI	GAGTC	2 cut(s)	289, 718
ScrFI	CCNGG	1 cut(s)	148
SfaNI	GCATC	4 cut(s)	164, 276, 333, 778
Sfr274I	CTCGAG	1 cut(s)	706
SinI	GGWCC	1 cut(s)	39
SlaI	CTCGAG	1 cut(s)	706
SmlI	CTYRAG	1 cut(s)	706
SmoI	CTYRAG	1 cut(s)	706
Sse9I	AATT	3 cut(s)	430, 523, 592
SsiI	CCGC	1 cut(s)	754
SspI	AATATT	1 cut(s)	448
SspMI	CTAG	2 cut(s)	234, 603
StyD4I	CCNGG	1 cut(s)	146
StyI	CCWWGG	1 cut(s)	508
TaaI	ACNGT	3 cut(s)	222, 502, 740
TaiI	ACGT	1 cut(s)	786
TaqI	TCGA	1 cut(s)	707
TasI	AATT	3 cut(s)	430, 523, 592
TfiI	GAWTC	4 cut(s)	245, 389, 491, 539
Tru1I	TTAA	2 cut(s)	186, 576
Tru9I	TTAA	2 cut(s)	186, 576
TscAI	CASTG	3 cut(s)	276, 505, 631
TseFI	GTSAC	4 cut(s)	5, 313, 512, 557
TseI	GCWGC	4 cut(s)	131, 203, 206, 346
Tsp45I	GTSAC	4 cut(s)	5, 313, 512, 557
TspDTI	ATGAA	3 cut(s)	237, 632, 680
TspGWI	ACGGA	1 cut(s)	601
TspRI	CASTG	3 cut(s)	276, 505, 631
Tth111I	GACNNNGTC	1 cut(s)	500
VpaK11BI	GGWCC	1 cut(s)	39
XbaI	TCTAGA	1 cut(s)	233
XceI	RCATGY	1 cut(s)	803
XcmI	CCANNNNNNNNNTGG	1 cut(s)	414
XhoI	CTCGAG	1 cut(s)	706
XmiI	GTMKAC	1 cut(s)	742
XmnI	GAANNNNTTC	1 cut(s)	261
XspI	CTAG	2 cut(s)	234, 603

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.