Rw4G016920

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr4
OG0005643
Physical Location & Seq
Forward (+)
38335189 .. 38338861
3673 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw4G016920.1

Sequence Viewer

Length: 597 bp
ATGTTTGGACTGTGGAGATTTTCTAGAGCCTTAGATTCATGTGTGGAACATATTCTTGCACTGGATGGGAGTCGGATGCAGGCAGAGTTGGCAACTATAATGGTGACAAAACATCAGAACGATCGTCAGAGGATGCAGCTTATCTCTAAGCAGTTCTATTGTGAGGAGGTTTTTGATGATTCAACCGCGGAACGCCCAAAAATAAGGTGGCGTTATCGGAATTACTTTAGTGATAATATTGCTCATGGTCAAAGAACACATGACAGCAACTCTCAATCTGATTCAGACAGTGTCTCCCATGGTGACTATCCCAATTCCTTTGATGGTGATTCCCAAGACACCCAAAGTGACACCCAGAATGACTCTAACAAAAGACGGATCAATTTTGACCCTAGACGAGTTCCTATGAACTCCAGTGTTGGTGCAACGGCAGACCCTTTTGAATATATCTTCGGTTATCCAGCACCAAAGGAGGAGCTTCATCTTCCAGACACCTCGAGTCTTTCCCCAAAAGCACAGGCTCGTAACCGTAGACGATCTCACCGCAAGCGTCGTACGCATCATCAGGAAGACGTATCAAACCTCCAACATGTGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

198

Amino Acids

23.06

Weight (kDa)

7.17

Isoelectric Point (pI)

70.93

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 532
AccII CGCG 1 cut(s) 188
AciI CCGC 3 cut(s) 186, 188, 544
AclWI GGATC 1 cut(s) 386
AfaI GTAC 1 cut(s) 556
AflIII ACRYGT 1 cut(s) 589
AgsI TTSAA 2 cut(s) 183, 443
AluBI AGCT 2 cut(s) 139, 478
AluI AGCT 2 cut(s) 139, 478
Alw26I GTCTC 1 cut(s) 298
AlwI GGATC 1 cut(s) 386
Ama87I CYCGRG 1 cut(s) 496
ApeKI GCWGC 1 cut(s) 136
Asp700I GAANNNNTTC 1 cut(s) 51
AsuHPI GGTGA 4 cut(s) 115, 314, 338, 533
AvaI CYCGRG 1 cut(s) 496
BbsI GAAGAC 1 cut(s) 576
BbvI GCAGC 1 cut(s) 148
BccI CCATC 2 cut(s) 59, 317
BceAI ACGGC 1 cut(s) 444
BcoDI GTCTC 1 cut(s) 298
BfaI CTAG 2 cut(s) 24, 393
BisI GCNGC 1 cut(s) 137
BlsI GCNGC 1 cut(s) 138
BmeT110I CYCGRG 1 cut(s) 496
BmsI GCATC 3 cut(s) 66, 123, 568
BpiI GAAGAC 1 cut(s) 576
BpmI CTGGAG 1 cut(s) 397
BsaJI CCNNGG 2 cut(s) 186, 298
BsaXI ACNNNNNCTCC 2 cut(s) 278, 308
Bse1I ACTGG 2 cut(s) 66, 414
BseDI CCNNGG 2 cut(s) 186, 298
BseGI GGATG 3 cut(s) 70, 81, 138
BseNI ACTGG 2 cut(s) 66, 414
BseRI GAGGAG 2 cut(s) 179, 488
BseXI GCAGC 1 cut(s) 148
Bsh1236I CGCG 1 cut(s) 188
Bsh1285I CGRYCG 1 cut(s) 124
BsiEI CGRYCG 1 cut(s) 124
BsiHKCI CYCGRG 1 cut(s) 496
BsiWI CGTACG 1 cut(s) 554
BsmAI GTCTC 1 cut(s) 298
BsoBI CYCGRG 1 cut(s) 496
Bsp143I GATC 3 cut(s) 121, 378, 536
Bsp19I CCATGG 1 cut(s) 298
BspACI CCGC 3 cut(s) 186, 188, 544
BspFNI CGCG 1 cut(s) 188
BspPI GGATC 1 cut(s) 386
BsrI ACTGG 2 cut(s) 66, 414
BssECI CCNNGG 2 cut(s) 186, 298
BssMI GATC 3 cut(s) 121, 378, 536
BssT1I CCWWGG 1 cut(s) 298
Bst4CI ACNGT 3 cut(s) 12, 290, 530
BstC8I GCNNGC 2 cut(s) 81, 548
BstDEI CTNAG 2 cut(s) 31, 147
BstDSI CCRYGG 2 cut(s) 186, 298
BstF5I GGATG 3 cut(s) 70, 81, 138
BstFNI CGCG 1 cut(s) 188
BstKTI GATC 3 cut(s) 124, 381, 539
BstMAI GTCTC 1 cut(s) 298
BstMBI GATC 3 cut(s) 121, 378, 536
BstMCI CGRYCG 1 cut(s) 124
BstMWI GCNNNNNNNGC 2 cut(s) 89, 556
BstNSI RCATGY 1 cut(s) 593
BstUI CGCG 1 cut(s) 188
BstV1I GCAGC 1 cut(s) 148
BstV2I GAAGAC 1 cut(s) 576
BtgI CCRYGG 2 cut(s) 186, 298
BtsCI GGATG 3 cut(s) 70, 81, 138
BtsIMutI CAGTG 3 cut(s) 59, 295, 421
Cac8I GCNNGC 2 cut(s) 81, 548
Cfr42I CCGCGG 1 cut(s) 189
CseI GACGC 1 cut(s) 539
Csp6I GTAC 1 cut(s) 555
CviAII CATG 5 cut(s) 39, 245, 260, 299, 590
CviJI RGCY 4 cut(s) 29, 139, 478, 521
CviKI_1 RGCY 4 cut(s) 29, 139, 478, 521
CviQI GTAC 1 cut(s) 555
DdeI CTNAG 2 cut(s) 31, 147
DpnI GATC 3 cut(s) 123, 380, 538
DpnII GATC 3 cut(s) 121, 378, 536
Eco130I CCWWGG 1 cut(s) 298
Eco88I CYCGRG 1 cut(s) 496
EcoT14I CCWWGG 1 cut(s) 298
ErhI CCWWGG 1 cut(s) 298
FaeI CATG 5 cut(s) 42, 248, 263, 302, 593
FaiI YATR 9 cut(s) 40, 51, 98, 246, 261, 300, 407, 447, 591
FatI CATG 5 cut(s) 38, 244, 259, 298, 589
FblI GTMKAC 1 cut(s) 532
Fnu4HI GCNGC 1 cut(s) 137
FokI GGATG 3 cut(s) 77, 88, 145
Fsp4HI GCNGC 1 cut(s) 137
FspBI CTAG 2 cut(s) 24, 393
GluI GCNGC 1 cut(s) 137
GsuI CTGGAG 1 cut(s) 397
HgaI GACGC 1 cut(s) 539
Hin1II CATG 5 cut(s) 42, 248, 263, 302, 593
HinfI GANTC 7 cut(s) 35, 70, 179, 281, 329, 362, 499
HphI GGTGA 4 cut(s) 115, 314, 338, 533
Hpy166II GTNNAC 1 cut(s) 533
Hpy188I TCNGA 6 cut(s) 75, 117, 129, 219, 280, 286
Hpy188III TCNNGA 3 cut(s) 24, 488, 566
Hpy8I GTNNAC 1 cut(s) 533
Hpy99I CGWCG 1 cut(s) 555
HpyCH4III ACNGT 3 cut(s) 12, 290, 530
HpyCH4IV ACGT 1 cut(s) 573
HpyCH4V TGCA 4 cut(s) 59, 79, 136, 425
HpyF10VI GCNNNNNNNGC 2 cut(s) 89, 556
HpyF3I CTNAG 2 cut(s) 31, 147
HpySE526I ACGT 1 cut(s) 573
Hsp92II CATG 5 cut(s) 42, 248, 263, 302, 593
KspI CCGCGG 1 cut(s) 189
Kzo9I GATC 3 cut(s) 121, 378, 536
LmnI GCTCC 1 cut(s) 475
LpnPI CCDG 8 cut(s) 47, 65, 368, 427, 474, 501, 503, 551
Lsp1109I GCAGC 1 cut(s) 148
LweI GCATC 3 cut(s) 66, 123, 568
MaeI CTAG 2 cut(s) 24, 393
MaeII ACGT 1 cut(s) 573
MaeIII GTNAC 4 cut(s) 103, 302, 347, 524
MalI GATC 3 cut(s) 123, 380, 538
MboI GATC 3 cut(s) 121, 378, 536
MboII GAAGA 3 cut(s) 442, 476, 581
MluCI AATT 3 cut(s) 220, 313, 382
MlyI GAGTC 3 cut(s) 79, 356, 508
MmeI TCCRAC 1 cut(s) 53
MnlI CCTC 6 cut(s) 123, 157, 160, 466, 505, 593
MroXI GAANNNNTTC 1 cut(s) 51
MspA1I CMGCKG 1 cut(s) 188
MvnI CGCG 1 cut(s) 188
MwoI GCNNNNNNNGC 2 cut(s) 89, 556
NcoI CCATGG 1 cut(s) 298
NdeII GATC 3 cut(s) 121, 378, 536
NlaIII CATG 5 cut(s) 42, 248, 263, 302, 593
NmuCI GTSAC 3 cut(s) 103, 302, 347
NspI RCATGY 1 cut(s) 593
PaeR7I CTCGAG 1 cut(s) 496
PciI ACATGT 1 cut(s) 589
PdmI GAANNNNTTC 1 cut(s) 51
PfeI GAWTC 4 cut(s) 35, 179, 281, 329
Pfl23II CGTACG 1 cut(s) 554
PflFI GACNNNGTC 1 cut(s) 290
PkrI GCNGC 1 cut(s) 138
Ple19I CGATCG 1 cut(s) 124
PleI GAGTC 3 cut(s) 78, 356, 507
PpsI GAGTC 3 cut(s) 78, 356, 507
PscI ACATGT 1 cut(s) 589
PspLI CGTACG 1 cut(s) 554
PspXI VCTCGAGB 1 cut(s) 496
PsyI GACNNNGTC 1 cut(s) 290
PvuI CGATCG 1 cut(s) 124
RsaI GTAC 1 cut(s) 556
RsaNI GTAC 1 cut(s) 555
SacII CCGCGG 1 cut(s) 189
SatI GCNGC 1 cut(s) 137
Sau3AI GATC 3 cut(s) 121, 378, 536
SchI GAGTC 3 cut(s) 79, 356, 508
SetI ASST 7 cut(s) 141, 171, 209, 480, 497, 576, 585
SfaNI GCATC 3 cut(s) 66, 123, 568
Sfr274I CTCGAG 1 cut(s) 496
Sfr303I CCGCGG 1 cut(s) 189
SgrBI CCGCGG 1 cut(s) 189
SlaI CTCGAG 1 cut(s) 496
SmlI CTYRAG 1 cut(s) 496
SmoI CTYRAG 1 cut(s) 496
Sse9I AATT 3 cut(s) 220, 313, 382
SsiI CCGC 3 cut(s) 186, 188, 544
SspI AATATT 1 cut(s) 238
SspMI CTAG 2 cut(s) 24, 393
StyI CCWWGG 1 cut(s) 298
TaaI ACNGT 3 cut(s) 12, 290, 530
TaiI ACGT 1 cut(s) 576
TaqI TCGA 1 cut(s) 497
TasI AATT 3 cut(s) 220, 313, 382
TfiI GAWTC 4 cut(s) 35, 179, 281, 329
TscAI CASTG 3 cut(s) 66, 295, 421
TseFI GTSAC 3 cut(s) 103, 302, 347
TseI GCWGC 1 cut(s) 136
Tsp45I GTSAC 3 cut(s) 103, 302, 347
TspDTI ATGAA 3 cut(s) 27, 422, 470
TspGWI ACGGA 1 cut(s) 391
TspRI CASTG 3 cut(s) 66, 295, 421
Tth111I GACNNNGTC 1 cut(s) 290
XbaI TCTAGA 1 cut(s) 23
XceI RCATGY 1 cut(s) 593
XcmI CCANNNNNNNNNTGG 1 cut(s) 204
XhoI CTCGAG 1 cut(s) 496
XmiI GTMKAC 1 cut(s) 532
XmnI GAANNNNTTC 1 cut(s) 51
XspI CTAG 2 cut(s) 24, 393
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.