Rh4AG199600

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4A
OG0005643
Physical Location & Seq
Forward (+)
48433042 .. 48437201
4160 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4AG199600.1

Sequence Viewer

Length: 696 bp
ATGTATCCTTTCCTTTATCTCAATCTCAATTCTTTTGTGGCAGCATCATCAAAGCTCAGTAAGATGATCCGACTAAACCTTTCGGGAGGAGCTGCTGCGATGTTTGGACTGTGGAGATTTTCTAGAGCCTTAGATTCATGTGTGGAACATATTCTTGCACTGGATGGGAGTCGGATGCAGGCAGAGTTGGCAACTATAATGGTGACAAAACATCAGAACGATCGTCAGAGGATGCAGCTTATCTCTAAGCAGTTCTATTGTGAGGAGGTTTTTGATGATTCAACCTCGGAACGCCCAAAAATAAGGTGGCGTTATCGGAATTACTTTAGTGATAATATTGCTCATGGTCAAAGAACACATGACAGCAACTCTCAATCTGATTCAGACAGTGTCTCCCATGGTGACTATCACAATTCCTTTGATGGTGATTCCCAAGACACCCAAAGTGACACCCAGAATGACTCTAACAAAAGACGGATCAATTTTGACCCTAGACGAGTTCCTATGAACTCCAGTGTTGGTGCAACGGCAGACCCTTTTGAATATATCTTCGGTTATCCAGCACCAAAGGAGGAGCTTCATCTTCCAGACACCTCGAGTCTTTCCCCAAAAGCACAGGCTCGTAACCGTAGACGATCTCACCGCAAGCGTCGTACGCATCATCAGGAAGATGTATCAAACCTCCAACATGTGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

231

Amino Acids

26.65

Weight (kDa)

8.87

Isoelectric Point (pI)

68.52

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 631
AciI CCGC 1 cut(s) 643
AclWI GGATC 2 cut(s) 61, 485
AfaI GTAC 1 cut(s) 655
AflIII ACRYGT 1 cut(s) 688
AgsI TTSAA 2 cut(s) 282, 542
AluBI AGCT 4 cut(s) 55, 92, 238, 577
AluI AGCT 4 cut(s) 55, 92, 238, 577
Alw26I GTCTC 1 cut(s) 397
AlwI GGATC 2 cut(s) 61, 485
Ama87I CYCGRG 1 cut(s) 595
ApeKI GCWGC 4 cut(s) 41, 92, 95, 235
Asp700I GAANNNNTTC 1 cut(s) 150
AsuHPI GGTGA 4 cut(s) 214, 413, 437, 632
AvaI CYCGRG 1 cut(s) 595
BbvI GCAGC 4 cut(s) 53, 79, 82, 247
BccI CCATC 2 cut(s) 158, 416
BceAI ACGGC 1 cut(s) 543
BciVI GTATCC 1 cut(s) 15
BcoDI GTCTC 1 cut(s) 397
BfaI CTAG 2 cut(s) 123, 492
BfuI GTATCC 1 cut(s) 15
BisI GCNGC 4 cut(s) 42, 93, 96, 236
BlsI GCNGC 4 cut(s) 43, 94, 97, 237
BmeT110I CYCGRG 1 cut(s) 595
BmsI GCATC 4 cut(s) 53, 165, 222, 667
BpmI CTGGAG 1 cut(s) 496
BsaJI CCNNGG 2 cut(s) 285, 397
BsaXI ACNNNNNCTCC 2 cut(s) 377, 407
Bse1I ACTGG 2 cut(s) 165, 513
BseDI CCNNGG 2 cut(s) 285, 397
BseGI GGATG 3 cut(s) 169, 180, 237
BseMII CTCAG 1 cut(s) 70
BseNI ACTGG 2 cut(s) 165, 513
BseRI GAGGAG 3 cut(s) 102, 278, 587
BseXI GCAGC 4 cut(s) 53, 79, 82, 247
Bsh1285I CGRYCG 1 cut(s) 223
BsiEI CGRYCG 1 cut(s) 223
BsiHKCI CYCGRG 1 cut(s) 595
BsiWI CGTACG 1 cut(s) 653
BsmAI GTCTC 1 cut(s) 397
BsoBI CYCGRG 1 cut(s) 595
Bsp143I GATC 4 cut(s) 66, 220, 477, 635
Bsp19I CCATGG 1 cut(s) 397
BspACI CCGC 1 cut(s) 643
BspCNI CTCAG 1 cut(s) 69
BspPI GGATC 2 cut(s) 61, 485
BsrI ACTGG 2 cut(s) 165, 513
BssECI CCNNGG 2 cut(s) 285, 397
BssMI GATC 4 cut(s) 66, 220, 477, 635
BssT1I CCWWGG 1 cut(s) 397
Bst4CI ACNGT 3 cut(s) 111, 389, 629
BstC8I GCNNGC 2 cut(s) 180, 647
BstDEI CTNAG 3 cut(s) 56, 130, 246
BstDSI CCRYGG 1 cut(s) 397
BstF5I GGATG 3 cut(s) 169, 180, 237
BstKTI GATC 4 cut(s) 69, 223, 480, 638
BstMAI GTCTC 1 cut(s) 397
BstMBI GATC 4 cut(s) 66, 220, 477, 635
BstMCI CGRYCG 1 cut(s) 223
BstMWI GCNNNNNNNGC 2 cut(s) 188, 655
BstNSI RCATGY 1 cut(s) 692
BstV1I GCAGC 4 cut(s) 53, 79, 82, 247
BsuI GTATCC 1 cut(s) 15
BtgI CCRYGG 1 cut(s) 397
BtgZI GCGATG 1 cut(s) 113
BtsCI GGATG 3 cut(s) 169, 180, 237
BtsIMutI CAGTG 3 cut(s) 158, 394, 520
Cac8I GCNNGC 2 cut(s) 180, 647
CseI GACGC 1 cut(s) 638
Csp6I GTAC 1 cut(s) 654
CviAII CATG 5 cut(s) 138, 344, 359, 398, 689
CviJI RGCY 6 cut(s) 55, 92, 128, 238, 577, 620
CviKI_1 RGCY 6 cut(s) 55, 92, 128, 238, 577, 620
CviQI GTAC 1 cut(s) 654
DdeI CTNAG 3 cut(s) 56, 130, 246
DpnI GATC 4 cut(s) 68, 222, 479, 637
DpnII GATC 4 cut(s) 66, 220, 477, 635
Eco130I CCWWGG 1 cut(s) 397
Eco88I CYCGRG 1 cut(s) 595
EcoT14I CCWWGG 1 cut(s) 397
ErhI CCWWGG 1 cut(s) 397
FaeI CATG 5 cut(s) 141, 347, 362, 401, 692
FaiI YATR 9 cut(s) 139, 150, 197, 345, 360, 399, 506, 546, 690
FatI CATG 5 cut(s) 137, 343, 358, 397, 688
FblI GTMKAC 1 cut(s) 631
Fnu4HI GCNGC 4 cut(s) 42, 93, 96, 236
FokI GGATG 3 cut(s) 176, 187, 244
Fsp4HI GCNGC 4 cut(s) 42, 93, 96, 236
FspBI CTAG 2 cut(s) 123, 492
GluI GCNGC 4 cut(s) 42, 93, 96, 236
GsuI CTGGAG 1 cut(s) 496
HgaI GACGC 1 cut(s) 638
Hin1II CATG 5 cut(s) 141, 347, 362, 401, 692
HinfI GANTC 7 cut(s) 134, 169, 278, 380, 428, 461, 598
HphI GGTGA 4 cut(s) 214, 413, 437, 632
Hpy166II GTNNAC 1 cut(s) 632
Hpy188I TCNGA 8 cut(s) 71, 174, 216, 228, 289, 318, 379, 385
Hpy188III TCNNGA 4 cut(s) 84, 123, 587, 665
Hpy8I GTNNAC 1 cut(s) 632
Hpy99I CGWCG 1 cut(s) 654
HpyCH4III ACNGT 3 cut(s) 111, 389, 629
HpyCH4V TGCA 4 cut(s) 158, 178, 235, 524
HpyF10VI GCNNNNNNNGC 2 cut(s) 188, 655
HpyF3I CTNAG 3 cut(s) 56, 130, 246
Hsp92II CATG 5 cut(s) 141, 347, 362, 401, 692
Kzo9I GATC 4 cut(s) 66, 220, 477, 635
LmnI GCTCC 2 cut(s) 89, 574
LpnPI CCDG 8 cut(s) 146, 164, 467, 526, 573, 600, 602, 650
Lsp1109I GCAGC 4 cut(s) 53, 79, 82, 247
LweI GCATC 4 cut(s) 53, 165, 222, 667
MaeI CTAG 2 cut(s) 123, 492
MaeIII GTNAC 4 cut(s) 202, 401, 446, 623
MalI GATC 4 cut(s) 68, 222, 479, 637
MboI GATC 4 cut(s) 66, 220, 477, 635
MboII GAAGA 3 cut(s) 541, 575, 680
MluCI AATT 4 cut(s) 28, 319, 412, 481
MlyI GAGTC 3 cut(s) 178, 455, 607
MmeI TCCRAC 2 cut(s) 94, 152
MnlI CCTC 8 cut(s) 80, 222, 256, 259, 295, 565, 604, 692
MroXI GAANNNNTTC 1 cut(s) 150
MwoI GCNNNNNNNGC 2 cut(s) 188, 655
NcoI CCATGG 1 cut(s) 397
NdeII GATC 4 cut(s) 66, 220, 477, 635
NlaIII CATG 5 cut(s) 141, 347, 362, 401, 692
NmuCI GTSAC 3 cut(s) 202, 401, 446
NspI RCATGY 1 cut(s) 692
PaeR7I CTCGAG 1 cut(s) 595
PciI ACATGT 1 cut(s) 688
PdmI GAANNNNTTC 1 cut(s) 150
PfeI GAWTC 4 cut(s) 134, 278, 380, 428
Pfl23II CGTACG 1 cut(s) 653
PflFI GACNNNGTC 1 cut(s) 389
PkrI GCNGC 4 cut(s) 43, 94, 97, 237
Ple19I CGATCG 1 cut(s) 223
PleI GAGTC 3 cut(s) 177, 455, 606
PpsI GAGTC 3 cut(s) 177, 455, 606
PscI ACATGT 1 cut(s) 688
PspLI CGTACG 1 cut(s) 653
PspXI VCTCGAGB 1 cut(s) 595
PsyI GACNNNGTC 1 cut(s) 389
PvuI CGATCG 1 cut(s) 223
RsaI GTAC 1 cut(s) 655
RsaNI GTAC 1 cut(s) 654
SatI GCNGC 4 cut(s) 42, 93, 96, 236
Sau3AI GATC 4 cut(s) 66, 220, 477, 635
SchI GAGTC 3 cut(s) 178, 455, 607
SfaNI GCATC 4 cut(s) 53, 165, 222, 667
Sfr274I CTCGAG 1 cut(s) 595
SlaI CTCGAG 1 cut(s) 595
SmlI CTYRAG 1 cut(s) 595
SmoI CTYRAG 1 cut(s) 595
Sse9I AATT 4 cut(s) 28, 319, 412, 481
SsiI CCGC 1 cut(s) 643
SspI AATATT 1 cut(s) 337
SspMI CTAG 2 cut(s) 123, 492
StyI CCWWGG 1 cut(s) 397
TaaI ACNGT 3 cut(s) 111, 389, 629
TaqI TCGA 1 cut(s) 596
TasI AATT 4 cut(s) 28, 319, 412, 481
TfiI GAWTC 4 cut(s) 134, 278, 380, 428
TscAI CASTG 3 cut(s) 165, 394, 520
TseFI GTSAC 3 cut(s) 202, 401, 446
TseI GCWGC 4 cut(s) 41, 92, 95, 235
Tsp45I GTSAC 3 cut(s) 202, 401, 446
TspDTI ATGAA 3 cut(s) 126, 521, 569
TspGWI ACGGA 1 cut(s) 490
TspRI CASTG 3 cut(s) 165, 394, 520
Tth111I GACNNNGTC 1 cut(s) 389
XbaI TCTAGA 1 cut(s) 122
XceI RCATGY 1 cut(s) 692
XcmI CCANNNNNNNNNTGG 1 cut(s) 303
XhoI CTCGAG 1 cut(s) 595
XmiI GTMKAC 1 cut(s) 631
XmnI GAANNNNTTC 1 cut(s) 150
XspI CTAG 2 cut(s) 123, 492
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.