Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr13

Orthogroup ID

OG0005643

Physical Location & Seq

Genomic Coordinates Reverse (-)

16835263 .. 16836760

Gene Structure 1498 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD13G1194600.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 480 bp

ATGGTGAATAAGTATCAGAATGATCCTTCTATGATGGGGCTTATCTCTAAACAGTTCTATTCTGAGAAAGTTTTTGATGATGCGAACTCAGATCAGTCAACGCTGAGGTGGCGTTATCGGAATTATTTTAGTGATAACATTAGCCATGGTCGAAGAACAGATTACAGCAATTCTCAAGGTGATCCGGACCAGGCTTCCCATGGTGACCATCAGAGTTCCTTTGACATTGACTCCCGGAACACCCAGAATGACTCCCACAAAATACGTTTTGCTCCCAAACAAGTTCCTGTGAACTCTGGTGTTGATGTAATGGTTGACCCTTTTGATTGCGTGTTTGGTAATACAAGCGAGGAGATTCTTCTTCCAAGTAGCTCTAGCACTGTCAATCCCCCAAAAGTACAGACTCGTAAACATAGAAGATCTCACCGTAGGCGTCATATGCACCATGAGGAAGACGTACCAAAAATGGAACATACGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

160

Amino Acids

18.47

Weight (kDa)

6.79

Isoelectric Point (pI)

78.09

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0005643)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G05430
fragaria_vesca	FvH4_4g16290 FvH4_4g16290 FvH4_4g16290
malus_domestica	MD07G1251800.v1.1 MD13G1194600.v1.1 MD13G1194700.v1.1 MD13G1194800.v1.1 MD16G1195500.v1.1
prunus_persica	Prupe.1G015500_v2.0.a1 Prupe.1G015500_v2.0.a1 Prupe.1G015500_v2.0.a1 Prupe.1G015500_v2.0.a1 Prupe.1G015500_v2.0.a1 Prupe.1G015500_v2.0.a1
pyrus_communis	pycom13g16700 pycom16g16470
rosa_chinensis	RchiOBHm_Chr4g0415951
rosa_laevigata	RLG00000008026
rosa_multiflora	Rmu_sc0005415.1_g000004 Rmu_sc0005922.1_g000001
rosa_roxburghii	Rroxscaffold_5G00359830
rosa_rugosa	Rorug04G0137200
rosa_samantha	Rh4AG199600 Rh4BG197100 Rh4CG210600 Rh4DG197400
rosa_wichuraiana	Rw4G016920

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccIII	TCCGGA	1 cut(s)	184
AclWI	GGATC	2 cut(s)	17, 176
AcyI	GRCGYC	1 cut(s)	433
AfaI	GTAC	2 cut(s)	399, 459
AjnI	CCWGG	1 cut(s)	189
AluBI	AGCT	1 cut(s)	372
AluI	AGCT	1 cut(s)	372
AlwI	GGATC	2 cut(s)	17, 176
Aor13HI	TCCGGA	1 cut(s)	184
AspS9I	GGNCC	1 cut(s)	187
AsuC2I	CCSGG	1 cut(s)	235
AsuHPI	GGTGA	4 cut(s)	16, 191, 215, 416
AvaII	GGWCC	1 cut(s)	187
BbsI	GAAGAC	1 cut(s)	459
BbvCI	CCTCAGC	1 cut(s)	104
BccI	CCATC	2 cut(s)	28, 216
BciT130I	CCWGG	1 cut(s)	191
BcnI	CCSGG	1 cut(s)	235
BfaI	CTAG	1 cut(s)	375
BglII	AGATCT	1 cut(s)	419
Bme1390I	CCNGG	2 cut(s)	191, 235
Bme18I	GGWCC	1 cut(s)	187
BmgT120I	GGNCC	1 cut(s)	187
BmrFI	CCNGG	2 cut(s)	191, 235
BmsI	GCATC	1 cut(s)	70
BpiI	GAAGAC	1 cut(s)	459
Bpu10I	CCTNAGC	1 cut(s)	104
BpuEI	CTTGAG	1 cut(s)	159
BpuMI	CCSGG	1 cut(s)	235
BsaAI	YACGTR	1 cut(s)	477
BsaHI	GRCGYC	1 cut(s)	433
BsaJI	CCNNGG	2 cut(s)	145, 199
BsaWI	WCCGGW	1 cut(s)	184
BsaXI	ACNNNNNCTCC	2 cut(s)	215, 245
BseAI	TCCGGA	1 cut(s)	184
BseBI	CCWGG	1 cut(s)	191
BseDI	CCNNGG	2 cut(s)	145, 199
BseMII	CTCAG	3 cut(s)	54, 95, 102
BseRI	GAGGAG	1 cut(s)	365
BsiSI	CCGG	2 cut(s)	185, 235
Bsp13I	TCCGGA	1 cut(s)	184
Bsp143I	GATC	4 cut(s)	22, 91, 181, 419
Bsp19I	CCATGG	2 cut(s)	145, 199
BspCNI	CTCAG	3 cut(s)	55, 96, 101
BspEI	TCCGGA	1 cut(s)	184
BspPI	GGATC	2 cut(s)	17, 176
BssECI	CCNNGG	2 cut(s)	145, 199
BssMI	GATC	4 cut(s)	22, 91, 181, 419
BssNI	GRCGYC	1 cut(s)	433
BssT1I	CCWWGG	2 cut(s)	145, 199
Bst2UI	CCWGG	1 cut(s)	191
Bst4CI	ACNGT	3 cut(s)	54, 382, 428
BstACI	GRCGYC	1 cut(s)	433
BstBAI	YACGTR	1 cut(s)	477
BstDEI	CTNAG	3 cut(s)	63, 88, 104
BstDSI	CCRYGG	2 cut(s)	145, 199
BstEII	GGTNACC	1 cut(s)	203
BstKTI	GATC	4 cut(s)	25, 94, 184, 422
BstMBI	GATC	4 cut(s)	22, 91, 181, 419
BstMWI	GCNNNNNNNGC	2 cut(s)	109, 439
BstNI	CCWGG	1 cut(s)	191
BstPI	GGTNACC	1 cut(s)	203
BstSCI	CCNGG	2 cut(s)	189, 233
BstSNI	TACGTA	1 cut(s)	477
BstV2I	GAAGAC	1 cut(s)	459
BstX2I	RGATCY	1 cut(s)	419
BstYI	RGATCY	1 cut(s)	419
BtgI	CCRYGG	2 cut(s)	145, 199
BtsIMutI	CAGTG	1 cut(s)	378
Cfr13I	GGNCC	1 cut(s)	187
CseI	GACGC	1 cut(s)	422
Csp6I	GTAC	2 cut(s)	398, 458
CviAII	CATG	3 cut(s)	146, 200, 446
CviJI	RGCY	4 cut(s)	40, 144, 194, 372
CviKI_1	RGCY	4 cut(s)	40, 144, 194, 372
CviQI	GTAC	2 cut(s)	398, 458
DdeI	CTNAG	3 cut(s)	63, 88, 104
DpnI	GATC	4 cut(s)	24, 93, 183, 421
DpnII	GATC	4 cut(s)	22, 91, 181, 419
Eco105I	TACGTA	1 cut(s)	477
Eco130I	CCWWGG	2 cut(s)	145, 199
Eco47I	GGWCC	1 cut(s)	187
Eco91I	GGTNACC	1 cut(s)	203
EcoO65I	GGTNACC	1 cut(s)	203
EcoRII	CCWGG	1 cut(s)	189
EcoT14I	CCWWGG	2 cut(s)	145, 199
ErhI	CCWWGG	2 cut(s)	145, 199
FaeI	CATG	3 cut(s)	149, 203, 449
FaiI	YATR	8 cut(s)	32, 147, 201, 414, 438, 440, 447, 474
FatI	CATG	3 cut(s)	145, 199, 445
FauNDI	CATATG	1 cut(s)	438
FspBI	CTAG	1 cut(s)	375
HapII	CCGG	2 cut(s)	185, 235
HgaI	GACGC	1 cut(s)	422
Hin1I	GRCGYC	1 cut(s)	433
Hin1II	CATG	3 cut(s)	149, 203, 449
HincII	GTYRAC	2 cut(s)	99, 316
HindII	GTYRAC	2 cut(s)	99, 316
HinfI	GANTC	4 cut(s)	230, 251, 355, 403
HpaII	CCGG	2 cut(s)	185, 235
HphI	GGTGA	4 cut(s)	16, 191, 215, 416
Hpy166II	GTNNAC	4 cut(s)	99, 292, 316, 410
Hpy188I	TCNGA	5 cut(s)	18, 64, 91, 120, 213
Hpy188III	TCNNGA	1 cut(s)	185
Hpy8I	GTNNAC	4 cut(s)	99, 292, 316, 410
HpyAV	CCTTC	1 cut(s)	36
HpyCH4III	ACNGT	3 cut(s)	54, 382, 428
HpyCH4IV	ACGT	3 cut(s)	265, 456, 476
HpyCH4V	TGCA	1 cut(s)	442
HpyF10VI	GCNNNNNNNGC	2 cut(s)	109, 439
HpyF3I	CTNAG	3 cut(s)	63, 88, 104
HpySE526I	ACGT	3 cut(s)	265, 456, 476
Hsp92I	GRCGYC	1 cut(s)	433
Hsp92II	CATG	3 cut(s)	149, 203, 449
Kpn2I	TCCGGA	1 cut(s)	184
Kzo9I	GATC	4 cut(s)	22, 91, 181, 419
LmnI	GCTCC	1 cut(s)	277
LpnPI	CCDG	7 cut(s)	176, 198, 203, 248, 257, 282, 300
LweI	GCATC	1 cut(s)	70
MaeI	CTAG	1 cut(s)	375
MaeII	ACGT	3 cut(s)	265, 456, 476
MaeIII	GTNAC	1 cut(s)	203
MalI	GATC	4 cut(s)	24, 93, 183, 421
MboI	GATC	4 cut(s)	22, 91, 181, 419
MboII	GAAGA	5 cut(s)	165, 350, 353, 429, 464
MflI	RGATCY	1 cut(s)	419
MluCI	AATT	2 cut(s)	121, 169
MlyI	GAGTC	3 cut(s)	224, 245, 397
MnlI	CCTC	3 cut(s)	99, 343, 442
MroI	TCCGGA	1 cut(s)	184
MspI	CCGG	2 cut(s)	185, 235
MspR9I	CCNGG	2 cut(s)	191, 235
MvaI	CCWGG	1 cut(s)	191
MwoI	GCNNNNNNNGC	2 cut(s)	109, 439
NciI	CCSGG	1 cut(s)	235
NcoI	CCATGG	2 cut(s)	145, 199
NdeI	CATATG	1 cut(s)	438
NdeII	GATC	4 cut(s)	22, 91, 181, 419
NlaIII	CATG	3 cut(s)	149, 203, 449
NmuCI	GTSAC	1 cut(s)	203
PfeI	GAWTC	1 cut(s)	355
PfoI	TCCNGGA	1 cut(s)	233
PleI	GAGTC	3 cut(s)	224, 245, 397
PpsI	GAGTC	3 cut(s)	224, 245, 397
Ppu21I	YACGTR	1 cut(s)	477
Psp6I	CCWGG	1 cut(s)	189
PspEI	GGTNACC	1 cut(s)	203
PspGI	CCWGG	1 cut(s)	189
PspPI	GGNCC	1 cut(s)	187
PsuI	RGATCY	1 cut(s)	419
RsaI	GTAC	2 cut(s)	399, 459
RsaNI	GTAC	2 cut(s)	398, 458
Sau3AI	GATC	4 cut(s)	22, 91, 181, 419
Sau96I	GGNCC	1 cut(s)	187
SchI	GAGTC	3 cut(s)	224, 245, 397
ScrFI	CCNGG	2 cut(s)	191, 235
SetI	ASST	6 cut(s)	110, 181, 268, 374, 459, 479
SfaNI	GCATC	1 cut(s)	70
SinI	GGWCC	1 cut(s)	187
SmlI	CTYRAG	1 cut(s)	174
SmoI	CTYRAG	1 cut(s)	174
SnaBI	TACGTA	1 cut(s)	477
Sse9I	AATT	2 cut(s)	121, 169
SspMI	CTAG	1 cut(s)	375
StyD4I	CCNGG	2 cut(s)	189, 233
StyI	CCWWGG	2 cut(s)	145, 199
TaaI	ACNGT	3 cut(s)	54, 382, 428
TaiI	ACGT	3 cut(s)	268, 459, 479
TaqI	TCGA	1 cut(s)	151
TasI	AATT	2 cut(s)	121, 169
TatI	WGTACW	1 cut(s)	397
TfiI	GAWTC	1 cut(s)	355
TscAI	CASTG	1 cut(s)	385
TseFI	GTSAC	1 cut(s)	203
Tsp45I	GTSAC	1 cut(s)	203
TspRI	CASTG	1 cut(s)	385
VpaK11BI	GGWCC	1 cut(s)	187
XcmI	CCANNNNNNNNNTGG	1 cut(s)	197
XspI	CTAG	1 cut(s)	375

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.