Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr13

Orthogroup ID

OG0005643

Physical Location & Seq

Genomic Coordinates Reverse (-)

12450001 .. 12453051

Gene Structure 3051 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom13g16700.5

Sequence Viewer

CDS Protein Promoter (2k)

Length: 789 bp

ATGGGAGAAGCCTTGTTCGAGCTGGAGCAACATCTCAGGTACAAACAGGTAAAACTGACGCCTGAAGAAACTAAGATTCTTCTTACTTGCAAGTCCAAAGCTGTCAGGGAGTTTACATTCGGAGGTCTTGCTGCTGCCACTGTTGCCTGGACAGCATCAAAGAAGCTGAATACGTTTATTCGACTTAACCTTTCAGGAGGAGCTGCTGCTCTATTTGGACTATGGAGCTTGTCTAGGTCCTTAAATTCATGTGTTAACCATATTCTTTCTCAGGATGGAAGTCGTATGCAGGCGGAGTTAGCAACTATAATGGTGAATAAGTATCAGAATGATCGTTCTATGATGGGGCTTATCTCTAAACAGTTCTATTCTGAGAAAGTTTTTGATGATGCGAACTCAGATCAGCCAACACTGAGGTGGCGTTATCGGAATTATTTTAGTGATAACATTAGCCATGGTCGAAGAACAGATTGCAGCGATTCTCAAGGTGATCCGGACCAGGCTTCCCATGGTGACCATCAGAGTTCCTCTGACAGTGATTCCCGGAACACCCTGAATGACTCGCACAAAATACGTTTTGCTCCCAAACAAGTTCCTGTGAACTCTGCTGTTGATGTAATGGTCGACCCTTTTGATTGCGTGTTTGGTAATACAAGCGAGGAGATTCTTCTTCCAAGTACCTCTAGCACTGTCAATCCCCCAAAAGTAGAGACTCGTAAACATAGAAGATCTCACCGTAGGCGTCATATGCACCATGAGGAAGACGTACCAAAAATGCAACATACGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

263

Amino Acids

29.69

Weight (kDa)

8.64

Isoelectric Point (pI)

63.92

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005643)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G05430
fragaria_vesca	FvH4_4g16290 FvH4_4g16290 FvH4_4g16290
malus_domestica	MD07G1251800.v1.1 MD13G1194600.v1.1 MD13G1194700.v1.1 MD13G1194800.v1.1 MD16G1195500.v1.1
prunus_persica	Prupe.1G015500_v2.0.a1 Prupe.1G015500_v2.0.a1 Prupe.1G015500_v2.0.a1 Prupe.1G015500_v2.0.a1 Prupe.1G015500_v2.0.a1 Prupe.1G015500_v2.0.a1
pyrus_communis	pycom13g16700 pycom16g16470
rosa_chinensis	RchiOBHm_Chr4g0415951
rosa_laevigata	RLG00000008026
rosa_multiflora	Rmu_sc0005415.1_g000004 Rmu_sc0005922.1_g000001
rosa_roxburghii	Rroxscaffold_5G00359830
rosa_rugosa	Rorug04G0137200
rosa_samantha	Rh4AG199600 Rh4BG197100 Rh4CG210600 Rh4DG197400
rosa_wichuraiana	Rw4G016920

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	624
AccIII	TCCGGA	1 cut(s)	493
AciI	CCGC	1 cut(s)	293
AclWI	GGATC	1 cut(s)	485
AcsI	RAATTY	1 cut(s)	244
AcuI	CTGAAG	1 cut(s)	84
AcyI	GRCGYC	2 cut(s)	59, 742
AfaI	GTAC	3 cut(s)	41, 679, 768
AjnI	CCWGG	2 cut(s)	146, 498
AleI	CACNNNNGTG	1 cut(s)	415
AluBI	AGCT	5 cut(s)	22, 101, 166, 203, 228
AluI	AGCT	5 cut(s)	22, 101, 166, 203, 228
Alw26I	GTCTC	1 cut(s)	704
AlwI	GGATC	1 cut(s)	485
Aor13HI	TCCGGA	1 cut(s)	493
ApeKI	GCWGC	5 cut(s)	131, 134, 203, 206, 474
ApoI	RAATTY	1 cut(s)	244
AspS9I	GGNCC	2 cut(s)	237, 496
AsuC2I	CCSGG	1 cut(s)	544
AsuHPI	GGTGA	4 cut(s)	325, 500, 524, 725
AvaII	GGWCC	2 cut(s)	237, 496
BbsI	GAAGAC	1 cut(s)	768
BbvI	GCAGC	5 cut(s)	118, 121, 190, 193, 486
BccI	CCATC	3 cut(s)	269, 337, 525
BciT130I	CCWGG	2 cut(s)	148, 500
BcnI	CCSGG	1 cut(s)	544
BcoDI	GTCTC	1 cut(s)	704
BfaI	CTAG	2 cut(s)	234, 684
BglII	AGATCT	1 cut(s)	728
BisI	GCNGC	5 cut(s)	132, 135, 204, 207, 475
BlsI	GCNGC	5 cut(s)	133, 136, 205, 208, 476
Bme1390I	CCNGG	3 cut(s)	148, 500, 544
Bme18I	GGWCC	2 cut(s)	237, 496
BmgT120I	GGNCC	2 cut(s)	237, 496
BmrFI	CCNGG	3 cut(s)	148, 500, 544
BmsI	GCATC	2 cut(s)	164, 379
BpiI	GAAGAC	1 cut(s)	768
BpmI	CTGGAG	1 cut(s)	44
BpuEI	CTTGAG	1 cut(s)	468
BpuMI	CCSGG	1 cut(s)	544
BsaAI	YACGTR	1 cut(s)	786
BsaHI	GRCGYC	2 cut(s)	59, 742
BsaJI	CCNNGG	2 cut(s)	454, 508
BsaWI	WCCGGW	1 cut(s)	493
BseAI	TCCGGA	1 cut(s)	493
BseBI	CCWGG	2 cut(s)	148, 500
BseDI	CCNNGG	2 cut(s)	454, 508
BseGI	GGATG	1 cut(s)	280
BseMII	CTCAG	5 cut(s)	49, 284, 363, 404, 411
BseRI	GAGGAG	2 cut(s)	213, 674
BseXI	GCAGC	5 cut(s)	118, 121, 190, 193, 486
BsiSI	CCGG	2 cut(s)	494, 544
BsmAI	GTCTC	1 cut(s)	704
Bsp13I	TCCGGA	1 cut(s)	493
Bsp143I	GATC	4 cut(s)	331, 400, 490, 728
Bsp19I	CCATGG	2 cut(s)	454, 508
BspACI	CCGC	1 cut(s)	293
BspCNI	CTCAG	5 cut(s)	48, 283, 364, 405, 410
BspEI	TCCGGA	1 cut(s)	493
BspPI	GGATC	1 cut(s)	485
BssECI	CCNNGG	2 cut(s)	454, 508
BssMI	GATC	4 cut(s)	331, 400, 490, 728
BssNI	GRCGYC	2 cut(s)	59, 742
BssT1I	CCWWGG	2 cut(s)	454, 508
Bst2UI	CCWGG	2 cut(s)	148, 500
Bst4CI	ACNGT	5 cut(s)	142, 363, 536, 691, 737
BstACI	GRCGYC	2 cut(s)	59, 742
BstBAI	YACGTR	1 cut(s)	786
BstC8I	GCNNGC	1 cut(s)	291
BstDEI	CTNAG	6 cut(s)	35, 72, 270, 372, 397, 413
BstDSI	CCRYGG	2 cut(s)	454, 508
BstEII	GGTNACC	1 cut(s)	512
BstF5I	GGATG	1 cut(s)	280
BstKTI	GATC	4 cut(s)	334, 403, 493, 731
BstMAI	GTCTC	1 cut(s)	704
BstMBI	GATC	4 cut(s)	331, 400, 490, 728
BstMWI	GCNNNNNNNGC	4 cut(s)	143, 152, 299, 748
BstNI	CCWGG	2 cut(s)	148, 500
BstPI	GGTNACC	1 cut(s)	512
BstSCI	CCNGG	3 cut(s)	146, 498, 542
BstSNI	TACGTA	1 cut(s)	786
BstV1I	GCAGC	5 cut(s)	118, 121, 190, 193, 486
BstV2I	GAAGAC	1 cut(s)	768
BstX2I	RGATCY	1 cut(s)	728
BstYI	RGATCY	1 cut(s)	728
BtgI	CCRYGG	2 cut(s)	454, 508
BtsCI	GGATG	1 cut(s)	280
BtsIMutI	CAGTG	4 cut(s)	138, 410, 541, 687
Cac8I	GCNNGC	1 cut(s)	291
Cfr13I	GGNCC	2 cut(s)	237, 496
CseI	GACGC	2 cut(s)	67, 731
Csp6I	GTAC	3 cut(s)	40, 678, 767
CviAII	CATG	4 cut(s)	249, 455, 509, 755
CviQI	GTAC	3 cut(s)	40, 678, 767
DdeI	CTNAG	6 cut(s)	35, 72, 270, 372, 397, 413
DpnI	GATC	4 cut(s)	333, 402, 492, 730
DpnII	GATC	4 cut(s)	331, 400, 490, 728
EciI	GGCGGA	1 cut(s)	308
Eco105I	TACGTA	1 cut(s)	786
Eco130I	CCWWGG	2 cut(s)	454, 508
Eco47I	GGWCC	2 cut(s)	237, 496
Eco57I	CTGAAG	1 cut(s)	84
Eco91I	GGTNACC	1 cut(s)	512
EcoO109I	RGGNCCY	1 cut(s)	237
EcoO65I	GGTNACC	1 cut(s)	512
EcoRII	CCWGG	2 cut(s)	146, 498
EcoT14I	CCWWGG	2 cut(s)	454, 508
ErhI	CCWWGG	2 cut(s)	454, 508
FaeI	CATG	4 cut(s)	252, 458, 512, 758
FatI	CATG	4 cut(s)	248, 454, 508, 754
FauNDI	CATATG	1 cut(s)	747
FblI	GTMKAC	1 cut(s)	624
Fnu4HI	GCNGC	5 cut(s)	132, 135, 204, 207, 475
FokI	GGATG	1 cut(s)	287
Fsp4HI	GCNGC	5 cut(s)	132, 135, 204, 207, 475
FspBI	CTAG	2 cut(s)	234, 684
GluI	GCNGC	5 cut(s)	132, 135, 204, 207, 475
GsuI	CTGGAG	1 cut(s)	44
HapII	CCGG	2 cut(s)	494, 544
HgaI	GACGC	2 cut(s)	67, 731
Hin1I	GRCGYC	2 cut(s)	59, 742
Hin1II	CATG	4 cut(s)	252, 458, 512, 758
HincII	GTYRAC	2 cut(s)	256, 625
HindII	GTYRAC	2 cut(s)	256, 625
HinfI	GANTC	6 cut(s)	76, 479, 539, 560, 664, 712
HpaI	GTTAAC	1 cut(s)	256
HpaII	CCGG	2 cut(s)	494, 544
HphI	GGTGA	4 cut(s)	325, 500, 524, 725
Hpy166II	GTNNAC	5 cut(s)	114, 256, 601, 625, 719
Hpy188I	TCNGA	7 cut(s)	122, 327, 373, 400, 429, 522, 532
Hpy188III	TCNNGA	3 cut(s)	195, 272, 494
Hpy8I	GTNNAC	5 cut(s)	114, 256, 601, 625, 719
HpyCH4III	ACNGT	5 cut(s)	142, 363, 536, 691, 737
HpyCH4IV	ACGT	4 cut(s)	173, 574, 765, 785
HpyCH4V	TGCA	5 cut(s)	90, 289, 474, 751, 778
HpyF10VI	GCNNNNNNNGC	4 cut(s)	143, 152, 299, 748
HpyF3I	CTNAG	6 cut(s)	35, 72, 270, 372, 397, 413
HpySE526I	ACGT	4 cut(s)	173, 574, 765, 785
Hsp92I	GRCGYC	2 cut(s)	59, 742
Hsp92II	CATG	4 cut(s)	252, 458, 512, 758
Kpn2I	TCCGGA	1 cut(s)	493
KspAI	GTTAAC	1 cut(s)	256
Kzo9I	GATC	4 cut(s)	331, 400, 490, 728
LmnI	GCTCC	4 cut(s)	25, 200, 225, 586
Lsp1109I	GCAGC	5 cut(s)	118, 121, 190, 193, 486
LweI	GCATC	2 cut(s)	164, 379
MaeI	CTAG	2 cut(s)	234, 684
MaeII	ACGT	4 cut(s)	173, 574, 765, 785
MaeIII	GTNAC	1 cut(s)	512
MalI	GATC	4 cut(s)	333, 402, 492, 730
MboI	GATC	4 cut(s)	331, 400, 490, 728
MboII	GAAGA	7 cut(s)	71, 77, 474, 659, 662, 738, 773
MflI	RGATCY	1 cut(s)	728
MluCI	AATT	2 cut(s)	244, 430
MlyI	GAGTC	2 cut(s)	554, 706
MnlI	CCTC	7 cut(s)	116, 191, 408, 538, 652, 691, 751
MroI	TCCGGA	1 cut(s)	493
MseI	TTAA	3 cut(s)	186, 242, 255
MslI	CAYNNNNRTG	1 cut(s)	415
MspI	CCGG	2 cut(s)	494, 544
MspR9I	CCNGG	3 cut(s)	148, 500, 544
MvaI	CCWGG	2 cut(s)	148, 500
MwoI	GCNNNNNNNGC	4 cut(s)	143, 152, 299, 748
NciI	CCSGG	1 cut(s)	544
NcoI	CCATGG	2 cut(s)	454, 508
NdeI	CATATG	1 cut(s)	747
NdeII	GATC	4 cut(s)	331, 400, 490, 728
NlaIII	CATG	4 cut(s)	252, 458, 512, 758
NmuCI	GTSAC	1 cut(s)	512
OliI	CACNNNNGTG	1 cut(s)	415
PfeI	GAWTC	4 cut(s)	76, 479, 539, 664
PfoI	TCCNGGA	1 cut(s)	542
PkrI	GCNGC	5 cut(s)	133, 136, 205, 208, 476
PleI	GAGTC	2 cut(s)	554, 706
PpsI	GAGTC	2 cut(s)	554, 706
Ppu21I	YACGTR	1 cut(s)	786
PpuMI	RGGWCCY	1 cut(s)	237
Psp5II	RGGWCCY	1 cut(s)	237
Psp6I	CCWGG	2 cut(s)	146, 498
PspEI	GGTNACC	1 cut(s)	512
PspGI	CCWGG	2 cut(s)	146, 498
PspPI	GGNCC	2 cut(s)	237, 496
PspPPI	RGGWCCY	1 cut(s)	237
PsuI	RGATCY	1 cut(s)	728
RsaI	GTAC	3 cut(s)	41, 679, 768
RsaNI	GTAC	3 cut(s)	40, 678, 767
RseI	CAYNNNNRTG	1 cut(s)	415
SalI	GTCGAC	1 cut(s)	623
SaqAI	TTAA	3 cut(s)	186, 242, 255
SatI	GCNGC	5 cut(s)	132, 135, 204, 207, 475
Sau3AI	GATC	4 cut(s)	331, 400, 490, 728
Sau96I	GGNCC	2 cut(s)	237, 496
SchI	GAGTC	2 cut(s)	554, 706
ScrFI	CCNGG	3 cut(s)	148, 500, 544
SfaNI	GCATC	2 cut(s)	164, 379
SinI	GGWCC	2 cut(s)	237, 496
SmiMI	CAYNNNNRTG	1 cut(s)	415
SmlI	CTYRAG	1 cut(s)	483
SmoI	CTYRAG	1 cut(s)	483
SnaBI	TACGTA	1 cut(s)	786
Sse9I	AATT	2 cut(s)	244, 430
SsiI	CCGC	1 cut(s)	293
SspMI	CTAG	2 cut(s)	234, 684
StyD4I	CCNGG	3 cut(s)	146, 498, 542
StyI	CCWWGG	2 cut(s)	454, 508
TaaI	ACNGT	5 cut(s)	142, 363, 536, 691, 737
TaiI	ACGT	4 cut(s)	176, 577, 768, 788
TaqI	TCGA	4 cut(s)	18, 181, 460, 624
TasI	AATT	2 cut(s)	244, 430
TfiI	GAWTC	4 cut(s)	76, 479, 539, 664
Tru1I	TTAA	3 cut(s)	186, 242, 255
Tru9I	TTAA	3 cut(s)	186, 242, 255
TscAI	CASTG	4 cut(s)	145, 417, 541, 694
TseFI	GTSAC	1 cut(s)	512
TseI	GCWGC	5 cut(s)	131, 134, 203, 206, 474
Tsp45I	GTSAC	1 cut(s)	512
TspDTI	ATGAA	1 cut(s)	237
TspRI	CASTG	4 cut(s)	145, 417, 541, 694
VpaK11BI	GGWCC	2 cut(s)	237, 496
XapI	RAATTY	1 cut(s)	244
XcmI	CCANNNNNNNNNTGG	2 cut(s)	414, 506
XmiI	GTMKAC	1 cut(s)	624
XspI	CTAG	2 cut(s)	234, 684

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.