Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr2

Orthogroup ID

OG0005643

Physical Location & Seq

Genomic Coordinates Reverse (-)

24519904 .. 24523019

Gene Structure 3116 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000008026

Sequence Viewer

CDS Protein Promoter (2k)

Length: 819 bp

ATGGGTGACGCTTTGTTTGAGCTGGAGAACAATCTCAGGTCCAAACAGGCGAAGTTGACGCCTGAAGAAACAAGGGTTCTTTCAGCTTGCAAGTCCAAGGCTATGAGGGAGTTCACATTCGGAGGTCTTGCAGCTGGTGTTGTAGCCTGGACAGCATCATCAAAGCTGAGTAAGATGATCCGACTTAACCTTTCGGGAGGAGCTGCTGCGATGTTTGGACTGTGGAGATTTTCTAGAGCCTTAGATTCATGTGTGGAACATATTCTTGCACTGGATGGGAGTCGGATGCAGGCAGAGTTGGCAACTATAATGGTGACAAAACATCAGAATGATCATCAGAGGATGCAGCTTATCTCTAAGCAGTTCTATTGTGAGGAGGTTTTTGATGATTCAACCTCAGAACGCCCAAAAATAAGGTGGCGTTATCGGAATTACTTTAGTGATAATATTGCTCATGGTCAAAGAACACATGACAGCGACTCCTACAGCAACTCTCAAGCTGATTCAGACAGTATCTCCCATGGTGACTATCACAATTCCTTTGATGGTGATTCCCAAGACACCCAAAGTGACACCCAGAATGACTCTAACAAACGACGGATCAATTTTGACCCTAGACGAGTTCCTATGAACTCCAGTGTTGGTGCAACGGCAGACCCTTTTGAATATATCTTCGGTTATCCAGCACCGAAGGAGGAGCTTCATCTTCCAGACACCTCGAGTCTTTCCCCAAAAGCGCAGGCTCGTAACCGTAGACAATCTCACCGCAAGCGTCGTACGCATCATCAGGAAGACGTATCAAACCTCCAACATGTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

273

Amino Acids

30.93

Weight (kDa)

7.82

Isoelectric Point (pI)

61.03

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005643)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G05430
fragaria_vesca	FvH4_4g16290 FvH4_4g16290 FvH4_4g16290
malus_domestica	MD07G1251800.v1.1 MD13G1194600.v1.1 MD13G1194700.v1.1 MD13G1194800.v1.1 MD16G1195500.v1.1
prunus_persica	Prupe.1G015500_v2.0.a1 Prupe.1G015500_v2.0.a1 Prupe.1G015500_v2.0.a1 Prupe.1G015500_v2.0.a1 Prupe.1G015500_v2.0.a1 Prupe.1G015500_v2.0.a1
pyrus_communis	pycom13g16700 pycom16g16470
rosa_chinensis	RchiOBHm_Chr4g0415951
rosa_laevigata	RLG00000008026
rosa_multiflora	Rmu_sc0005415.1_g000004 Rmu_sc0005922.1_g000001
rosa_roxburghii	Rroxscaffold_5G00359830
rosa_rugosa	Rorug04G0137200
rosa_samantha	Rh4AG199600 Rh4BG197100 Rh4CG210600 Rh4DG197400
rosa_wichuraiana	Rw4G016920

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	754
AciI	CCGC	1 cut(s)	766
AclWI	GGATC	2 cut(s)	172, 608
AcuI	CTGAAG	1 cut(s)	84
AcyI	GRCGYC	1 cut(s)	59
AfaI	GTAC	1 cut(s)	778
AflIII	ACRYGT	1 cut(s)	811
AgsI	TTSAA	2 cut(s)	393, 665
AjnI	CCWGG	1 cut(s)	146
AluBI	AGCT	8 cut(s)	22, 86, 134, 166, 203, 349, 500, 700
AluI	AGCT	8 cut(s)	22, 86, 134, 166, 203, 349, 500, 700
AlwI	GGATC	2 cut(s)	172, 608
Ama87I	CYCGRG	1 cut(s)	718
ApeKI	GCWGC	4 cut(s)	131, 203, 206, 346
ArsI	GACNNNNNNTTYG	1 cut(s)	31
Asp700I	GAANNNNTTC	1 cut(s)	261
AspLEI	GCGC	1 cut(s)	739
AspS9I	GGNCC	1 cut(s)	39
AsuHPI	GGTGA	5 cut(s)	17, 325, 536, 560, 755
AvaI	CYCGRG	1 cut(s)	718
AvaII	GGWCC	1 cut(s)	39
BbsI	GAAGAC	1 cut(s)	798
BbvI	GCAGC	4 cut(s)	143, 190, 193, 358
BccI	CCATC	2 cut(s)	269, 539
BceAI	ACGGC	1 cut(s)	666
BciT130I	CCWGG	1 cut(s)	148
BclI	TGATCA	1 cut(s)	331
BfaI	CTAG	2 cut(s)	234, 615
BfmI	CTRYAG	1 cut(s)	484
BisI	GCNGC	4 cut(s)	132, 204, 207, 347
BlsI	GCNGC	4 cut(s)	133, 205, 208, 348
Bme1390I	CCNGG	1 cut(s)	148
Bme18I	GGWCC	1 cut(s)	39
BmeT110I	CYCGRG	1 cut(s)	718
BmgT120I	GGNCC	1 cut(s)	39
BmrFI	CCNGG	1 cut(s)	148
BmsI	GCATC	4 cut(s)	164, 276, 333, 790
BpiI	GAAGAC	1 cut(s)	798
BpmI	CTGGAG	2 cut(s)	44, 619
BpuEI	CTTGAG	1 cut(s)	480
BsaHI	GRCGYC	1 cut(s)	59
BsaJI	CCNNGG	2 cut(s)	96, 520
BsaXI	ACNNNNNCTCC	4 cut(s)	464, 494, 500, 530
Bse1I	ACTGG	2 cut(s)	276, 636
BseBI	CCWGG	1 cut(s)	148
BseDI	CCNNGG	2 cut(s)	96, 520
BseGI	GGATG	3 cut(s)	280, 291, 348
BseMII	CTCAG	3 cut(s)	49, 158, 411
BseNI	ACTGG	2 cut(s)	276, 636
BseRI	GAGGAG	3 cut(s)	213, 389, 710
BseXI	GCAGC	4 cut(s)	143, 190, 193, 358
BsiHKCI	CYCGRG	1 cut(s)	718
BsiWI	CGTACG	1 cut(s)	776
BsoBI	CYCGRG	1 cut(s)	718
Bsp143I	GATC	3 cut(s)	177, 331, 600
Bsp19I	CCATGG	1 cut(s)	520
BspACI	CCGC	1 cut(s)	766
BspCNI	CTCAG	3 cut(s)	48, 159, 410
BspPI	GGATC	2 cut(s)	172, 608
BsrI	ACTGG	2 cut(s)	276, 636
BssECI	CCNNGG	2 cut(s)	96, 520
BssMI	GATC	3 cut(s)	177, 331, 600
BssNI	GRCGYC	1 cut(s)	59
BssT1I	CCWWGG	2 cut(s)	96, 520
Bst2UI	CCWGG	1 cut(s)	148
Bst4CI	ACNGT	3 cut(s)	222, 512, 752
BstACI	GRCGYC	1 cut(s)	59
BstC8I	GCNNGC	4 cut(s)	88, 291, 741, 770
BstDEI	CTNAG	5 cut(s)	35, 167, 241, 357, 397
BstDSI	CCRYGG	1 cut(s)	520
BstF5I	GGATG	3 cut(s)	280, 291, 348
BstHHI	GCGC	1 cut(s)	739
BstKTI	GATC	3 cut(s)	180, 334, 603
BstMBI	GATC	3 cut(s)	177, 331, 600
BstMWI	GCNNNNNNNGC	3 cut(s)	152, 299, 778
BstNI	CCWGG	1 cut(s)	148
BstNSI	RCATGY	1 cut(s)	815
BstSCI	CCNGG	1 cut(s)	146
BstSFI	CTRYAG	1 cut(s)	484
BstV1I	GCAGC	4 cut(s)	143, 190, 193, 358
BstV2I	GAAGAC	1 cut(s)	798
BtgI	CCRYGG	1 cut(s)	520
BtgZI	GCGATG	1 cut(s)	224
BtsCI	GGATG	3 cut(s)	280, 291, 348
BtsIMutI	CAGTG	2 cut(s)	269, 643
Cac8I	GCNNGC	4 cut(s)	88, 291, 741, 770
CfoI	GCGC	1 cut(s)	739
Cfr13I	GGNCC	1 cut(s)	39
CseI	GACGC	3 cut(s)	17, 67, 761
Csp6I	GTAC	1 cut(s)	777
CviAII	CATG	5 cut(s)	249, 455, 470, 521, 812
CviQI	GTAC	1 cut(s)	777
DdeI	CTNAG	5 cut(s)	35, 167, 241, 357, 397
DpnI	GATC	3 cut(s)	179, 333, 602
DpnII	GATC	3 cut(s)	177, 331, 600
Eco130I	CCWWGG	2 cut(s)	96, 520
Eco47I	GGWCC	1 cut(s)	39
Eco57I	CTGAAG	1 cut(s)	84
Eco88I	CYCGRG	1 cut(s)	718
EcoRII	CCWGG	1 cut(s)	146
EcoT14I	CCWWGG	2 cut(s)	96, 520
ErhI	CCWWGG	2 cut(s)	96, 520
FaeI	CATG	5 cut(s)	252, 458, 473, 524, 815
FatI	CATG	5 cut(s)	248, 454, 469, 520, 811
FbaI	TGATCA	1 cut(s)	331
FblI	GTMKAC	1 cut(s)	754
Fnu4HI	GCNGC	4 cut(s)	132, 204, 207, 347
FokI	GGATG	3 cut(s)	287, 298, 355
Fsp4HI	GCNGC	4 cut(s)	132, 204, 207, 347
FspBI	CTAG	2 cut(s)	234, 615
GlaI	GCGC	1 cut(s)	738
GluI	GCNGC	4 cut(s)	132, 204, 207, 347
GsuI	CTGGAG	2 cut(s)	44, 619
HgaI	GACGC	3 cut(s)	17, 67, 761
HhaI	GCGC	1 cut(s)	739
Hin1I	GRCGYC	1 cut(s)	59
Hin1II	CATG	5 cut(s)	252, 458, 473, 524, 815
Hin6I	GCGC	1 cut(s)	737
HinP1I	GCGC	1 cut(s)	737
HincII	GTYRAC	1 cut(s)	57
HindII	GTYRAC	1 cut(s)	57
HinfI	GANTC	8 cut(s)	245, 280, 389, 479, 503, 551, 584, 721
HphI	GGTGA	5 cut(s)	17, 325, 536, 560, 755
Hpy166II	GTNNAC	3 cut(s)	57, 114, 755
Hpy188I	TCNGA	8 cut(s)	122, 182, 285, 327, 339, 400, 429, 508
Hpy188III	TCNNGA	4 cut(s)	195, 234, 710, 788
Hpy8I	GTNNAC	3 cut(s)	57, 114, 755
Hpy99I	CGWCG	2 cut(s)	600, 777
HpyAV	CCTTC	1 cut(s)	685
HpyCH4III	ACNGT	3 cut(s)	222, 512, 752
HpyCH4IV	ACGT	1 cut(s)	795
HpyCH4V	TGCA	6 cut(s)	90, 131, 269, 289, 346, 647
HpyF10VI	GCNNNNNNNGC	3 cut(s)	152, 299, 778
HpyF3I	CTNAG	5 cut(s)	35, 167, 241, 357, 397
HpySE526I	ACGT	1 cut(s)	795
Hsp92I	GRCGYC	1 cut(s)	59
Hsp92II	CATG	5 cut(s)	252, 458, 473, 524, 815
HspAI	GCGC	1 cut(s)	737
Ksp22I	TGATCA	1 cut(s)	331
Kzo9I	GATC	3 cut(s)	177, 331, 600
LmnI	GCTCC	2 cut(s)	200, 697
Lsp1109I	GCAGC	4 cut(s)	143, 190, 193, 358
LweI	GCATC	4 cut(s)	164, 276, 333, 790
MaeI	CTAG	2 cut(s)	234, 615
MaeII	ACGT	1 cut(s)	795
MaeIII	GTNAC	5 cut(s)	5, 313, 524, 569, 746
MalI	GATC	3 cut(s)	179, 333, 602
MboI	GATC	3 cut(s)	177, 331, 600
MboII	GAAGA	4 cut(s)	77, 664, 698, 803
MluCI	AATT	3 cut(s)	430, 535, 604
MlyI	GAGTC	4 cut(s)	289, 473, 578, 730
MmeI	TCCRAC	2 cut(s)	205, 263
MroXI	GAANNNNTTC	1 cut(s)	261
MseI	TTAA	1 cut(s)	186
MslI	CAYNNNNRTG	1 cut(s)	327
MspA1I	CMGCKG	1 cut(s)	134
MspR9I	CCNGG	1 cut(s)	148
MvaI	CCWGG	1 cut(s)	148
MwoI	GCNNNNNNNGC	3 cut(s)	152, 299, 778
NcoI	CCATGG	1 cut(s)	520
NdeII	GATC	3 cut(s)	177, 331, 600
NlaIII	CATG	5 cut(s)	252, 458, 473, 524, 815
NmuCI	GTSAC	4 cut(s)	5, 313, 524, 569
NspI	RCATGY	1 cut(s)	815
PaeR7I	CTCGAG	1 cut(s)	718
PciI	ACATGT	1 cut(s)	811
PdmI	GAANNNNTTC	1 cut(s)	261
PfeI	GAWTC	4 cut(s)	245, 389, 503, 551
Pfl23II	CGTACG	1 cut(s)	776
PkrI	GCNGC	4 cut(s)	133, 205, 208, 348
PleI	GAGTC	4 cut(s)	288, 473, 578, 729
PpsI	GAGTC	4 cut(s)	288, 473, 578, 729
PscI	ACATGT	1 cut(s)	811
Psp6I	CCWGG	1 cut(s)	146
PspGI	CCWGG	1 cut(s)	146
PspLI	CGTACG	1 cut(s)	776
PspPI	GGNCC	1 cut(s)	39
PspXI	VCTCGAGB	1 cut(s)	718
PvuII	CAGCTG	1 cut(s)	134
RsaI	GTAC	1 cut(s)	778
RsaNI	GTAC	1 cut(s)	777
RseI	CAYNNNNRTG	1 cut(s)	327
SaqAI	TTAA	1 cut(s)	186
SatI	GCNGC	4 cut(s)	132, 204, 207, 347
Sau3AI	GATC	3 cut(s)	177, 331, 600
Sau96I	GGNCC	1 cut(s)	39
SchI	GAGTC	4 cut(s)	289, 473, 578, 730
ScrFI	CCNGG	1 cut(s)	148
SfaNI	GCATC	4 cut(s)	164, 276, 333, 790
SfcI	CTRYAG	1 cut(s)	484
Sfr274I	CTCGAG	1 cut(s)	718
SinI	GGWCC	1 cut(s)	39
SlaI	CTCGAG	1 cut(s)	718
SmiMI	CAYNNNNRTG	1 cut(s)	327
SmlI	CTYRAG	2 cut(s)	495, 718
SmoI	CTYRAG	2 cut(s)	495, 718
Sse9I	AATT	3 cut(s)	430, 535, 604
SsiI	CCGC	1 cut(s)	766
SspI	AATATT	1 cut(s)	448
SspMI	CTAG	2 cut(s)	234, 615
StyD4I	CCNGG	1 cut(s)	146
StyI	CCWWGG	2 cut(s)	96, 520
TaaI	ACNGT	3 cut(s)	222, 512, 752
TaiI	ACGT	1 cut(s)	798
TaqI	TCGA	1 cut(s)	719
TasI	AATT	3 cut(s)	430, 535, 604
TfiI	GAWTC	4 cut(s)	245, 389, 503, 551
Tru1I	TTAA	1 cut(s)	186
Tru9I	TTAA	1 cut(s)	186
TscAI	CASTG	2 cut(s)	276, 643
TseFI	GTSAC	4 cut(s)	5, 313, 524, 569
TseI	GCWGC	4 cut(s)	131, 203, 206, 346
Tsp45I	GTSAC	4 cut(s)	5, 313, 524, 569
TspDTI	ATGAA	3 cut(s)	237, 644, 692
TspGWI	ACGGA	1 cut(s)	613
TspRI	CASTG	2 cut(s)	276, 643
VpaK11BI	GGWCC	1 cut(s)	39
XbaI	TCTAGA	1 cut(s)	233
XceI	RCATGY	1 cut(s)	815
XcmI	CCANNNNNNNNNTGG	1 cut(s)	414
XhoI	CTCGAG	1 cut(s)	718
XmiI	GTMKAC	1 cut(s)	754
XmnI	GAANNNNTTC	1 cut(s)	261
XspI	CTAG	2 cut(s)	234, 615

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.