Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb4

Orthogroup ID

OG0005643

Physical Location & Seq

Genomic Coordinates Forward (+)

20291076 .. 20294697

Gene Structure 3622 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_4g16290.t2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 819 bp

ATGGGTGACGCTTTGTTTGAGCTGGAGAACAATCTCAGGTCCAAACAGGCGAAGTTGACGCCTGATGAAACAAAGGTTCTTTCAGCTTGCAAGTCTAAGGCTATGAGAGAGTTCACATTCGGAGGTCTTGCCGCTGGTCTTGTAGCCTGGACAGCATCATCGAAGCTGAGTAAGTTGATCCAACTTAACATTTCAGGAGGAGCTGCTGCTATTTTTGGACTGTGGAGATTTTCTAGAGCCTTAGATTCATGTGTTGAACATATTCTTGCACTGCATGGGAGTCGGATGCAGGCAGAGTTGGCAACTATAATGGTGACAAAACATCAGAATGATCGTCAGAGGATGCTGCTTGTCTCTAAGCAGTTCTATTGTGAGGAGGTTTTTGATGATTCAACATCAGAACGCCCGAAAATAAGGTGGCGTTATCGTAACTACTTTAGTGATAATATTGCCCTTGCTCAAAGAACACATGATAGCGACTCCTACAGCAACTCTCCAGATGATTCGGACAGCGTCTCCCATGGTGACTATCAAGATTCCTTCGATGGTGATTCCGGAGACACCCAAAGTGGCACCCAGACCGACTCTAACAAAAGACGCATCAATTTTGACCCTAGACGAGTTCCTATGAACTCCAAAGTTGGTGCACCGGCAGACCCTTTTGAAGATATATTTGGTTATCAATCACCAAAGGAGGAGATTCAGCTTCCAGACACCTCTAGTGTTTCCCCAAAAGCACAGGCTCGTAACCGTAGACGATCTCACCACAAGCGTCGTGCTCATCATCAGGAAGACATATCAAACCTACAACATGTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

273

Amino Acids

30.7

Weight (kDa)

7.79

Isoelectric Point (pI)

64.72

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005643)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G05430
fragaria_vesca	FvH4_4g16290 FvH4_4g16290 FvH4_4g16290
malus_domestica	MD07G1251800.v1.1 MD13G1194600.v1.1 MD13G1194700.v1.1 MD13G1194800.v1.1 MD16G1195500.v1.1
prunus_persica	Prupe.1G015500_v2.0.a1 Prupe.1G015500_v2.0.a1 Prupe.1G015500_v2.0.a1 Prupe.1G015500_v2.0.a1 Prupe.1G015500_v2.0.a1 Prupe.1G015500_v2.0.a1
pyrus_communis	pycom13g16700 pycom16g16470
rosa_chinensis	RchiOBHm_Chr4g0415951
rosa_laevigata	RLG00000008026
rosa_multiflora	Rmu_sc0005415.1_g000004 Rmu_sc0005922.1_g000001
rosa_roxburghii	Rroxscaffold_5G00359830
rosa_rugosa	Rorug04G0137200
rosa_samantha	Rh4AG199600 Rh4BG197100 Rh4CG210600 Rh4DG197400
rosa_wichuraiana	Rw4G016920

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	572
AccI	GTMKAC	1 cut(s)	754
AccIII	TCCGGA	1 cut(s)	554
AciI	CCGC	1 cut(s)	132
AclWI	GGATC	1 cut(s)	172
AcyI	GRCGYC	1 cut(s)	59
AflIII	ACRYGT	1 cut(s)	811
AgsI	TTSAA	3 cut(s)	257, 393, 665
AjnI	CCWGG	1 cut(s)	146
AjuI	GAANNNNNNNTTGG	2 cut(s)	657, 689
AluBI	AGCT	5 cut(s)	22, 86, 166, 203, 706
AluI	AGCT	5 cut(s)	22, 86, 166, 203, 706
Alw21I	GWGCWC	2 cut(s)	649, 781
Alw26I	GTCTC	3 cut(s)	358, 520, 552
Alw44I	GTGCAC	1 cut(s)	645
AlwI	GGATC	1 cut(s)	172
Aor13HI	TCCGGA	1 cut(s)	554
ApaLI	GTGCAC	1 cut(s)	645
ApeKI	GCWGC	3 cut(s)	203, 206, 346
ArsI	GACNNNNNNTTYG	1 cut(s)	31
Asp700I	GAANNNNTTC	1 cut(s)	261
AspS9I	GGNCC	1 cut(s)	39
AsuHPI	GGTGA	6 cut(s)	17, 325, 536, 560, 678, 755
AvaII	GGWCC	1 cut(s)	39
BaeGI	GKGCMC	1 cut(s)	649
BanI	GGYRCC	1 cut(s)	572
BbsI	GAAGAC	1 cut(s)	798
Bbv12I	GWGCWC	2 cut(s)	649, 781
BbvI	GCAGC	3 cut(s)	190, 193, 333
BccI	CCATC	1 cut(s)	539
BcgI	CGANNNNNNTGC	2 cut(s)	263, 297
BciT130I	CCWGG	1 cut(s)	148
BcoDI	GTCTC	3 cut(s)	358, 520, 552
BfaI	CTAG	3 cut(s)	234, 615, 720
BfmI	CTRYAG	1 cut(s)	484
BisI	GCNGC	4 cut(s)	132, 204, 207, 347
BlsI	GCNGC	4 cut(s)	133, 205, 208, 348
Bme1390I	CCNGG	1 cut(s)	148
Bme18I	GGWCC	1 cut(s)	39
BmgT120I	GGNCC	1 cut(s)	39
BmiI	GGNNCC	1 cut(s)	574
BmrFI	CCNGG	1 cut(s)	148
BmsI	GCATC	4 cut(s)	164, 276, 333, 609
BpiI	GAAGAC	1 cut(s)	798
BpmI	CTGGAG	2 cut(s)	44, 480
BsaHI	GRCGYC	1 cut(s)	59
BsaJI	CCNNGG	1 cut(s)	520
BsaWI	WCCGGW	1 cut(s)	554
BsaXI	ACNNNNNCTCC	2 cut(s)	500, 530
Bse118I	RCCGGY	1 cut(s)	649
BseAI	TCCGGA	1 cut(s)	554
BseBI	CCWGG	1 cut(s)	148
BseDI	CCNNGG	1 cut(s)	520
BseGI	GGATG	2 cut(s)	291, 348
BseMII	CTCAG	2 cut(s)	49, 158
BseRI	GAGGAG	3 cut(s)	213, 389, 710
BseSI	GKGCMC	1 cut(s)	649
BseXI	GCAGC	3 cut(s)	190, 193, 333
BshNI	GGYRCC	1 cut(s)	572
BsiHKAI	GWGCWC	2 cut(s)	649, 781
BsiSI	CCGG	2 cut(s)	555, 650
BsmAI	GTCTC	3 cut(s)	358, 520, 552
BsmBI	CGTCTC	1 cut(s)	520
Bsp1286I	GDGCHC	2 cut(s)	649, 781
Bsp13I	TCCGGA	1 cut(s)	554
Bsp143I	GATC	3 cut(s)	177, 331, 758
Bsp19I	CCATGG	1 cut(s)	520
BspACI	CCGC	1 cut(s)	132
BspCNI	CTCAG	2 cut(s)	48, 159
BspEI	TCCGGA	1 cut(s)	554
BspLI	GGNNCC	1 cut(s)	574
BspPI	GGATC	1 cut(s)	172
BspT107I	GGYRCC	1 cut(s)	572
BsrFI	RCCGGY	1 cut(s)	649
BssAI	RCCGGY	1 cut(s)	649
BssECI	CCNNGG	1 cut(s)	520
BssMI	GATC	3 cut(s)	177, 331, 758
BssNI	GRCGYC	1 cut(s)	59
BssT1I	CCWWGG	1 cut(s)	520
Bst2UI	CCWGG	1 cut(s)	148
Bst4CI	ACNGT	2 cut(s)	222, 752
BstACI	GRCGYC	1 cut(s)	59
BstC8I	GCNNGC	2 cut(s)	88, 291
BstDEI	CTNAG	5 cut(s)	35, 96, 167, 241, 357
BstDSI	CCRYGG	1 cut(s)	520
BstF5I	GGATG	2 cut(s)	291, 348
BstKTI	GATC	3 cut(s)	180, 334, 761
BstMAI	GTCTC	3 cut(s)	358, 520, 552
BstMBI	GATC	3 cut(s)	177, 331, 758
BstMWI	GCNNNNNNNGC	2 cut(s)	152, 299
BstNI	CCWGG	1 cut(s)	148
BstNSI	RCATGY	1 cut(s)	815
BstSCI	CCNGG	1 cut(s)	146
BstSFI	CTRYAG	1 cut(s)	484
BstSLI	GKGCMC	1 cut(s)	649
BstV1I	GCAGC	3 cut(s)	190, 193, 333
BstV2I	GAAGAC	1 cut(s)	798
BtgI	CCRYGG	1 cut(s)	520
BtsCI	GGATG	2 cut(s)	291, 348
BtsI	GCAGTG	1 cut(s)	269
BtsIMutI	CAGTG	1 cut(s)	269
Cac8I	GCNNGC	2 cut(s)	88, 291
Cfr10I	RCCGGY	1 cut(s)	649
Cfr13I	GGNCC	1 cut(s)	39
CseI	GACGC	5 cut(s)	17, 67, 502, 606, 761
CviAII	CATG	5 cut(s)	249, 275, 470, 521, 812
CviJI	RGCY	9 cut(s)	22, 86, 101, 146, 166, 203, 239, 706, 743
CviKI_1	RGCY	9 cut(s)	22, 86, 101, 146, 166, 203, 239, 706, 743
DdeI	CTNAG	5 cut(s)	35, 96, 167, 241, 357
DpnI	GATC	3 cut(s)	179, 333, 760
DpnII	GATC	3 cut(s)	177, 331, 758
Eco130I	CCWWGG	1 cut(s)	520
Eco47I	GGWCC	1 cut(s)	39
EcoRII	CCWGG	1 cut(s)	146
EcoT14I	CCWWGG	1 cut(s)	520
ErhI	CCWWGG	1 cut(s)	520
Esp3I	CGTCTC	1 cut(s)	520
FaeI	CATG	5 cut(s)	252, 278, 473, 524, 815
FatI	CATG	5 cut(s)	248, 274, 469, 520, 811
FblI	GTMKAC	1 cut(s)	754
Fnu4HI	GCNGC	4 cut(s)	132, 204, 207, 347
FokI	GGATG	2 cut(s)	298, 355
Fsp4HI	GCNGC	4 cut(s)	132, 204, 207, 347
FspBI	CTAG	3 cut(s)	234, 615, 720
GluI	GCNGC	4 cut(s)	132, 204, 207, 347
GsuI	CTGGAG	2 cut(s)	44, 480
HapII	CCGG	2 cut(s)	555, 650
HgaI	GACGC	5 cut(s)	17, 67, 502, 606, 761
Hin1I	GRCGYC	1 cut(s)	59
Hin1II	CATG	5 cut(s)	252, 278, 473, 524, 815
HincII	GTYRAC	1 cut(s)	57
HindII	GTYRAC	1 cut(s)	57
HinfI	GANTC	9 cut(s)	245, 280, 389, 479, 503, 536, 551, 584, 700
HpaII	CCGG	2 cut(s)	555, 650
HphI	GGTGA	6 cut(s)	17, 325, 536, 560, 678, 755
Hpy166II	GTNNAC	4 cut(s)	57, 114, 647, 755
Hpy188I	TCNGA	6 cut(s)	122, 285, 327, 339, 400, 508
Hpy188III	TCNNGA	7 cut(s)	195, 234, 497, 533, 555, 710, 788
Hpy8I	GTNNAC	4 cut(s)	57, 114, 647, 755
Hpy99I	CGWCG	1 cut(s)	777
HpyAV	CCTTC	1 cut(s)	550
HpyCH4III	ACNGT	2 cut(s)	222, 752
HpyCH4V	TGCA	5 cut(s)	90, 269, 274, 289, 647
HpyF10VI	GCNNNNNNNGC	2 cut(s)	152, 299
HpyF3I	CTNAG	5 cut(s)	35, 96, 167, 241, 357
Hsp92I	GRCGYC	1 cut(s)	59
Hsp92II	CATG	5 cut(s)	252, 278, 473, 524, 815
Kpn2I	TCCGGA	1 cut(s)	554
Kzo9I	GATC	3 cut(s)	177, 331, 758
LmnI	GCTCC	1 cut(s)	200
Lsp1109I	GCAGC	3 cut(s)	190, 193, 333
LweI	GCATC	4 cut(s)	164, 276, 333, 609
MaeI	CTAG	3 cut(s)	234, 615, 720
MaeIII	GTNAC	5 cut(s)	5, 313, 428, 524, 746
MalI	GATC	3 cut(s)	179, 333, 760
MboI	GATC	3 cut(s)	177, 331, 758
MboII	GAAGA	2 cut(s)	677, 803
MhlI	GDGCHC	2 cut(s)	649, 781
MluCI	AATT	1 cut(s)	604
MlyI	GAGTC	3 cut(s)	289, 473, 578
MmeI	TCCRAC	2 cut(s)	205, 263
MnlI	CCTC	7 cut(s)	116, 191, 333, 367, 370, 688, 727
MroI	TCCGGA	1 cut(s)	554
MroXI	GAANNNNTTC	1 cut(s)	261
MseI	TTAA	1 cut(s)	186
MslI	CAYNNNNRTG	1 cut(s)	327
MspA1I	CMGCKG	1 cut(s)	134
MspI	CCGG	2 cut(s)	555, 650
MspR9I	CCNGG	1 cut(s)	148
MvaI	CCWGG	1 cut(s)	148
MwoI	GCNNNNNNNGC	2 cut(s)	152, 299
NcoI	CCATGG	1 cut(s)	520
NdeII	GATC	3 cut(s)	177, 331, 758
NlaIII	CATG	5 cut(s)	252, 278, 473, 524, 815
NlaIV	GGNNCC	1 cut(s)	574
NmuCI	GTSAC	3 cut(s)	5, 313, 524
NspI	RCATGY	1 cut(s)	815
PciI	ACATGT	1 cut(s)	811
PdmI	GAANNNNTTC	1 cut(s)	261
PfeI	GAWTC	6 cut(s)	245, 389, 503, 536, 551, 700
PflFI	GACNNNGTC	1 cut(s)	512
PkrI	GCNGC	4 cut(s)	133, 205, 208, 348
PleI	GAGTC	3 cut(s)	288, 473, 578
PpsI	GAGTC	3 cut(s)	288, 473, 578
PscI	ACATGT	1 cut(s)	811
Psp6I	CCWGG	1 cut(s)	146
PspGI	CCWGG	1 cut(s)	146
PspN4I	GGNNCC	1 cut(s)	574
PspPI	GGNCC	1 cut(s)	39
PsyI	GACNNNGTC	1 cut(s)	512
RseI	CAYNNNNRTG	1 cut(s)	327
SaqAI	TTAA	1 cut(s)	186
SatI	GCNGC	4 cut(s)	132, 204, 207, 347
Sau3AI	GATC	3 cut(s)	177, 331, 758
Sau96I	GGNCC	1 cut(s)	39
SchI	GAGTC	3 cut(s)	289, 473, 578
ScrFI	CCNGG	1 cut(s)	148
SduI	GDGCHC	2 cut(s)	649, 781
SfaNI	GCATC	4 cut(s)	164, 276, 333, 609
SfcI	CTRYAG	1 cut(s)	484
SinI	GGWCC	1 cut(s)	39
SmiMI	CAYNNNNRTG	1 cut(s)	327
Sse9I	AATT	1 cut(s)	604
SsiI	CCGC	1 cut(s)	132
SspI	AATATT	1 cut(s)	448
SspMI	CTAG	3 cut(s)	234, 615, 720
StyD4I	CCNGG	1 cut(s)	146
StyI	CCWWGG	1 cut(s)	520
TaaI	ACNGT	2 cut(s)	222, 752
TaqI	TCGA	2 cut(s)	161, 543
TaqII	GACCGA	1 cut(s)	596
TasI	AATT	1 cut(s)	604
TauI	GCSGC	1 cut(s)	134
TfiI	GAWTC	6 cut(s)	245, 389, 503, 536, 551, 700
Tru1I	TTAA	1 cut(s)	186
Tru9I	TTAA	1 cut(s)	186
TscAI	CASTG	1 cut(s)	276
TseFI	GTSAC	3 cut(s)	5, 313, 524
TseI	GCWGC	3 cut(s)	203, 206, 346
Tsp45I	GTSAC	3 cut(s)	5, 313, 524
TspDTI	ATGAA	3 cut(s)	81, 237, 644
TspRI	CASTG	1 cut(s)	276
Tth111I	GACNNNGTC	1 cut(s)	512
VneI	GTGCAC	1 cut(s)	645
VpaK11BI	GGWCC	1 cut(s)	39
XbaI	TCTAGA	1 cut(s)	233
XceI	RCATGY	1 cut(s)	815
XmiI	GTMKAC	1 cut(s)	754
XmnI	GAANNNNTTC	1 cut(s)	261
XspI	CTAG	3 cut(s)	234, 615, 720

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.