Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000005

Orthogroup ID

OG0005643

Physical Location & Seq

Genomic Coordinates Forward (+)

40116650 .. 40120911

Gene Structure 4262 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_5G00359830.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 774 bp

ATGGGTGACGCTTTGTTTGAGCTGGAGAACAATCTCAGGTCCAAACAGGCGAAGTTGACGCCTGAAGAAACAAGGGTTCTTTCAGCTTGCAAGTCTAAGGCTATGAGGGAGTTCACATTCGGAGGTCTTGCAGCGGGTGTTGTAGCCTGGACAGGAGCTGCTGCGATGTTTGGACTGTGGAGATTTTCTAGAGCCTTAGATTCATGTGTGGAACATATTCTTGCACTGGATGGGAGTCGGATGCAGGCAGAGTTGGCAACTATAATGGTGACAAAACATCAGAACGATCATCAGAGGATGCAGCTTATCTCTAAGCAATTCTATTGTGAGGAGGTTTTTGATGATTCAACCTCGGAACGCCCAAAAATAAGGTGGCGTTATCGGAATTACTTTAGTGATAATATTGCTCATGGTCAAAGAACACATGACAGCGACTCCTACAGAAACTCTCAAGCTGATTCAGACAGTGTCTCCCATGGTGAATATCACAATTCCTTTGATGATGATTCCCAAGACACCCAAAGTGACACCCAGAATGAGACTAACAAAAGACGGATCAATTTTGACCCTAGACGAGTTCCTATGAACTCCAGTGTTGGTGCAACGGCAGACCCTTTTGAATATATCTTTGGTTATCCAGCACCAAAGGAGGAGCTTCATCTTCCAGAAACCTCGAGTCTTTCCCCAAAAGCGCAGGCTCGTAACCGTAGACGATCTCACCGCAAGCGTCATACACATCATCAGGAAGACGTATCAAGCCTCCAACACGTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

257

Amino Acids

29.5

Weight (kDa)

6.67

Isoelectric Point (pI)

61.72

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005643)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G05430
fragaria_vesca	FvH4_4g16290 FvH4_4g16290 FvH4_4g16290
malus_domestica	MD07G1251800.v1.1 MD13G1194600.v1.1 MD13G1194700.v1.1 MD13G1194800.v1.1 MD16G1195500.v1.1
prunus_persica	Prupe.1G015500_v2.0.a1 Prupe.1G015500_v2.0.a1 Prupe.1G015500_v2.0.a1 Prupe.1G015500_v2.0.a1 Prupe.1G015500_v2.0.a1 Prupe.1G015500_v2.0.a1
pyrus_communis	pycom13g16700 pycom16g16470
rosa_chinensis	RchiOBHm_Chr4g0415951
rosa_laevigata	RLG00000008026
rosa_multiflora	Rmu_sc0005415.1_g000004 Rmu_sc0005922.1_g000001
rosa_roxburghii	Rroxscaffold_5G00359830
rosa_rugosa	Rorug04G0137200
rosa_samantha	Rh4AG199600 Rh4BG197100 Rh4CG210600 Rh4DG197400
rosa_wichuraiana	Rw4G016920

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	709
AciI	CCGC	2 cut(s)	134, 721
AclWI	GGATC	1 cut(s)	563
AcuI	CTGAAG	1 cut(s)	84
AcvI	CACGTG	1 cut(s)	769
AcyI	GRCGYC	1 cut(s)	59
AflIII	ACRYGT	2 cut(s)	766, 768
AgsI	TTSAA	2 cut(s)	348, 620
AjnI	CCWGG	1 cut(s)	146
AjuI	GAANNNNNNNTTGG	2 cut(s)	612, 644
AluBI	AGCT	6 cut(s)	22, 86, 158, 304, 455, 655
AluI	AGCT	6 cut(s)	22, 86, 158, 304, 455, 655
Alw26I	GTCTC	2 cut(s)	475, 533
AlwI	GGATC	1 cut(s)	563
AlwNI	CAGNNNCTG	1 cut(s)	158
Ama87I	CYCGRG	1 cut(s)	673
ApeKI	GCWGC	4 cut(s)	131, 158, 161, 301
ArsI	GACNNNNNNTTYG	1 cut(s)	31
Asp700I	GAANNNNTTC	1 cut(s)	216
AspLEI	GCGC	1 cut(s)	694
AspS9I	GGNCC	1 cut(s)	39
AsuHPI	GGTGA	4 cut(s)	17, 280, 491, 710
AvaI	CYCGRG	1 cut(s)	673
AvaII	GGWCC	1 cut(s)	39
BbrPI	CACGTG	1 cut(s)	769
BbsI	GAAGAC	1 cut(s)	753
BbvI	GCAGC	4 cut(s)	143, 145, 148, 313
BccI	CCATC	1 cut(s)	224
BceAI	ACGGC	1 cut(s)	621
BciT130I	CCWGG	1 cut(s)	148
BcoDI	GTCTC	2 cut(s)	475, 533
BfaI	CTAG	2 cut(s)	189, 570
BfmI	CTRYAG	1 cut(s)	439
BisI	GCNGC	4 cut(s)	132, 159, 162, 302
BlsI	GCNGC	4 cut(s)	133, 160, 163, 303
Bme1390I	CCNGG	1 cut(s)	148
Bme18I	GGWCC	1 cut(s)	39
BmeT110I	CYCGRG	1 cut(s)	673
BmgT120I	GGNCC	1 cut(s)	39
BmrFI	CCNGG	1 cut(s)	148
BmsI	GCATC	2 cut(s)	231, 288
BpiI	GAAGAC	1 cut(s)	753
BpmI	CTGGAG	2 cut(s)	44, 574
BpuEI	CTTGAG	1 cut(s)	435
BsaAI	YACGTR	1 cut(s)	769
BsaHI	GRCGYC	1 cut(s)	59
BsaJI	CCNNGG	2 cut(s)	351, 475
BsaXI	ACNNNNNCTCC	4 cut(s)	419, 449, 455, 485
Bse1I	ACTGG	2 cut(s)	231, 591
BseBI	CCWGG	1 cut(s)	148
BseDI	CCNNGG	2 cut(s)	351, 475
BseGI	GGATG	3 cut(s)	235, 246, 303
BseMII	CTCAG	1 cut(s)	49
BseNI	ACTGG	2 cut(s)	231, 591
BseRI	GAGGAG	2 cut(s)	344, 665
BseXI	GCAGC	4 cut(s)	143, 145, 148, 313
BsiHKCI	CYCGRG	1 cut(s)	673
BsmAI	GTCTC	2 cut(s)	475, 533
BsoBI	CYCGRG	1 cut(s)	673
Bsp143I	GATC	3 cut(s)	286, 555, 713
Bsp19I	CCATGG	1 cut(s)	475
BspACI	CCGC	2 cut(s)	134, 721
BspCNI	CTCAG	1 cut(s)	48
BspPI	GGATC	1 cut(s)	563
BsrI	ACTGG	2 cut(s)	231, 591
BssECI	CCNNGG	2 cut(s)	351, 475
BssMI	GATC	3 cut(s)	286, 555, 713
BssNI	GRCGYC	1 cut(s)	59
BssT1I	CCWWGG	1 cut(s)	475
Bst2UI	CCWGG	1 cut(s)	148
Bst4CI	ACNGT	3 cut(s)	177, 467, 707
BstACI	GRCGYC	1 cut(s)	59
BstBAI	YACGTR	1 cut(s)	769
BstC8I	GCNNGC	4 cut(s)	88, 246, 696, 725
BstDEI	CTNAG	4 cut(s)	35, 96, 196, 312
BstDSI	CCRYGG	1 cut(s)	475
BstF5I	GGATG	3 cut(s)	235, 246, 303
BstHHI	GCGC	1 cut(s)	694
BstKTI	GATC	3 cut(s)	289, 558, 716
BstMAI	GTCTC	2 cut(s)	475, 533
BstMBI	GATC	3 cut(s)	286, 555, 713
BstMWI	GCNNNNNNNGC	1 cut(s)	254
BstNI	CCWGG	1 cut(s)	148
BstSCI	CCNGG	1 cut(s)	146
BstSFI	CTRYAG	1 cut(s)	439
BstV1I	GCAGC	4 cut(s)	143, 145, 148, 313
BstV2I	GAAGAC	1 cut(s)	753
BtgI	CCRYGG	1 cut(s)	475
BtgZI	GCGATG	1 cut(s)	179
BtsCI	GGATG	3 cut(s)	235, 246, 303
BtsIMutI	CAGTG	3 cut(s)	224, 472, 598
Cac8I	GCNNGC	4 cut(s)	88, 246, 696, 725
CaiI	CAGNNNCTG	1 cut(s)	158
CfoI	GCGC	1 cut(s)	694
Cfr13I	GGNCC	1 cut(s)	39
CseI	GACGC	3 cut(s)	17, 67, 716
CviAII	CATG	4 cut(s)	204, 410, 425, 476
DdeI	CTNAG	4 cut(s)	35, 96, 196, 312
DpnI	GATC	3 cut(s)	288, 557, 715
DpnII	GATC	3 cut(s)	286, 555, 713
Eco130I	CCWWGG	1 cut(s)	475
Eco47I	GGWCC	1 cut(s)	39
Eco57I	CTGAAG	1 cut(s)	84
Eco72I	CACGTG	1 cut(s)	769
Eco88I	CYCGRG	1 cut(s)	673
EcoRII	CCWGG	1 cut(s)	146
EcoT14I	CCWWGG	1 cut(s)	475
ErhI	CCWWGG	1 cut(s)	475
FaeI	CATG	4 cut(s)	207, 413, 428, 479
FatI	CATG	4 cut(s)	203, 409, 424, 475
FauI	CCCGC	1 cut(s)	127
FblI	GTMKAC	1 cut(s)	709
Fnu4HI	GCNGC	4 cut(s)	132, 159, 162, 302
FokI	GGATG	3 cut(s)	242, 253, 310
Fsp4HI	GCNGC	4 cut(s)	132, 159, 162, 302
FspBI	CTAG	2 cut(s)	189, 570
GlaI	GCGC	1 cut(s)	693
GluI	GCNGC	4 cut(s)	132, 159, 162, 302
GsuI	CTGGAG	2 cut(s)	44, 574
HgaI	GACGC	3 cut(s)	17, 67, 716
HhaI	GCGC	1 cut(s)	694
Hin1I	GRCGYC	1 cut(s)	59
Hin1II	CATG	4 cut(s)	207, 413, 428, 479
Hin6I	GCGC	1 cut(s)	692
HinP1I	GCGC	1 cut(s)	692
HincII	GTYRAC	1 cut(s)	57
HindII	GTYRAC	1 cut(s)	57
HinfI	GANTC	7 cut(s)	200, 235, 344, 434, 458, 506, 676
HphI	GGTGA	4 cut(s)	17, 280, 491, 710
Hpy166II	GTNNAC	3 cut(s)	57, 114, 710
Hpy188I	TCNGA	7 cut(s)	122, 240, 282, 294, 355, 384, 463
Hpy188III	TCNNGA	3 cut(s)	189, 665, 743
Hpy8I	GTNNAC	3 cut(s)	57, 114, 710
HpyCH4III	ACNGT	3 cut(s)	177, 467, 707
HpyCH4IV	ACGT	2 cut(s)	750, 768
HpyCH4V	TGCA	6 cut(s)	90, 131, 224, 244, 301, 602
HpyF10VI	GCNNNNNNNGC	1 cut(s)	254
HpyF3I	CTNAG	4 cut(s)	35, 96, 196, 312
HpySE526I	ACGT	2 cut(s)	750, 768
Hsp92I	GRCGYC	1 cut(s)	59
Hsp92II	CATG	4 cut(s)	207, 413, 428, 479
HspAI	GCGC	1 cut(s)	692
Kzo9I	GATC	3 cut(s)	286, 555, 713
LmnI	GCTCC	2 cut(s)	155, 652
Lsp1109I	GCAGC	4 cut(s)	143, 145, 148, 313
LweI	GCATC	2 cut(s)	231, 288
MaeI	CTAG	2 cut(s)	189, 570
MaeII	ACGT	2 cut(s)	750, 768
MaeIII	GTNAC	4 cut(s)	5, 268, 524, 701
MalI	GATC	3 cut(s)	288, 557, 715
MboI	GATC	3 cut(s)	286, 555, 713
MboII	GAAGA	3 cut(s)	77, 653, 758
MluCI	AATT	4 cut(s)	317, 385, 490, 559
MlyI	GAGTC	3 cut(s)	244, 428, 685
MmeI	TCCRAC	1 cut(s)	218
MnlI	CCTC	9 cut(s)	99, 116, 288, 322, 325, 361, 643, 682, 770
MroXI	GAANNNNTTC	1 cut(s)	216
MspA1I	CMGCKG	1 cut(s)	134
MspR9I	CCNGG	1 cut(s)	148
MvaI	CCWGG	1 cut(s)	148
MwoI	GCNNNNNNNGC	1 cut(s)	254
NcoI	CCATGG	1 cut(s)	475
NdeII	GATC	3 cut(s)	286, 555, 713
NlaIII	CATG	4 cut(s)	207, 413, 428, 479
NmuCI	GTSAC	3 cut(s)	5, 268, 524
PaeR7I	CTCGAG	1 cut(s)	673
PdmI	GAANNNNTTC	1 cut(s)	216
PfeI	GAWTC	4 cut(s)	200, 344, 458, 506
PflFI	GACNNNGTC	1 cut(s)	467
PkrI	GCNGC	4 cut(s)	133, 160, 163, 303
PleI	GAGTC	3 cut(s)	243, 428, 684
PmaCI	CACGTG	1 cut(s)	769
PmlI	CACGTG	1 cut(s)	769
PpsI	GAGTC	3 cut(s)	243, 428, 684
Ppu21I	YACGTR	1 cut(s)	769
Psp6I	CCWGG	1 cut(s)	146
PspCI	CACGTG	1 cut(s)	769
PspGI	CCWGG	1 cut(s)	146
PspPI	GGNCC	1 cut(s)	39
PspXI	VCTCGAGB	1 cut(s)	673
PstNI	CAGNNNCTG	1 cut(s)	158
PsyI	GACNNNGTC	1 cut(s)	467
SatI	GCNGC	4 cut(s)	132, 159, 162, 302
Sau3AI	GATC	3 cut(s)	286, 555, 713
Sau96I	GGNCC	1 cut(s)	39
SchI	GAGTC	3 cut(s)	244, 428, 685
ScrFI	CCNGG	1 cut(s)	148
SfaNI	GCATC	2 cut(s)	231, 288
SfcI	CTRYAG	1 cut(s)	439
Sfr274I	CTCGAG	1 cut(s)	673
SinI	GGWCC	1 cut(s)	39
SlaI	CTCGAG	1 cut(s)	673
SmlI	CTYRAG	2 cut(s)	450, 673
SmoI	CTYRAG	2 cut(s)	450, 673
Sse9I	AATT	4 cut(s)	317, 385, 490, 559
SsiI	CCGC	2 cut(s)	134, 721
SspI	AATATT	1 cut(s)	403
SspMI	CTAG	2 cut(s)	189, 570
StyD4I	CCNGG	1 cut(s)	146
StyI	CCWWGG	1 cut(s)	475
TaaI	ACNGT	3 cut(s)	177, 467, 707
TaiI	ACGT	2 cut(s)	753, 771
TaqI	TCGA	1 cut(s)	674
TasI	AATT	4 cut(s)	317, 385, 490, 559
TfiI	GAWTC	4 cut(s)	200, 344, 458, 506
TscAI	CASTG	3 cut(s)	231, 472, 598
TseFI	GTSAC	3 cut(s)	5, 268, 524
TseI	GCWGC	4 cut(s)	131, 158, 161, 301
Tsp45I	GTSAC	3 cut(s)	5, 268, 524
TspDTI	ATGAA	3 cut(s)	192, 599, 647
TspGWI	ACGGA	1 cut(s)	568
TspRI	CASTG	3 cut(s)	231, 472, 598
Tth111I	GACNNNGTC	1 cut(s)	467
VpaK11BI	GGWCC	1 cut(s)	39
XbaI	TCTAGA	1 cut(s)	188
XcmI	CCANNNNNNNNNTGG	1 cut(s)	369
XhoI	CTCGAG	1 cut(s)	673
XmiI	GTMKAC	1 cut(s)	709
XmnI	GAANNNNTTC	1 cut(s)	216
XspI	CTAG	2 cut(s)	189, 570

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.