Rmu_sc0005415.1_g000004

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0005415.1
OG0005643
Physical Location & Seq
Forward (+)
13679 .. 14935
1257 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0005415.1_g000004.1.cds

Sequence Viewer

Length: 303 bp
atgggtgacgctttgtttgagctggagaacaatctcaggtccaaacaggcgaagttgacgcctgaagaaataagggttctttcagattgcaagtctaaggcgatgagggagttcacattcggaggtcttgcagctggtgttgtagcctggacagcatcatcaaagctcagtaagatgatccgactaaacctttcgggaggagctgctgcgatgtttggactgtggagattttctagaaccttagattcatgtgtggaacatattcttgcactggatgggagtcggatgcaggcagttctttaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

100

Amino Acids

10.92

Weight (kDa)

9.18

Isoelectric Point (pI)

45.06

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 172
AcuI CTGAAG 1 cut(s) 84
AcyI GRCGYC 1 cut(s) 59
AjnI CCWGG 1 cut(s) 146
AluBI AGCT 4 cut(s) 22, 134, 166, 203
AluI AGCT 4 cut(s) 22, 134, 166, 203
AlwI GGATC 1 cut(s) 172
ApeKI GCWGC 3 cut(s) 131, 203, 206
ArsI GACNNNNNNTTYG 1 cut(s) 31
Asp700I GAANNNNTTC 1 cut(s) 261
AspS9I GGNCC 1 cut(s) 39
AsuHPI GGTGA 1 cut(s) 17
AvaII GGWCC 1 cut(s) 39
BbvI GCAGC 3 cut(s) 143, 190, 193
BccI CCATC 1 cut(s) 269
BciT130I CCWGG 1 cut(s) 148
BfaI CTAG 1 cut(s) 234
BisI GCNGC 3 cut(s) 132, 204, 207
BlsI GCNGC 3 cut(s) 133, 205, 208
Bme1390I CCNGG 1 cut(s) 148
Bme18I GGWCC 1 cut(s) 39
BmgT120I GGNCC 1 cut(s) 39
BmrFI CCNGG 1 cut(s) 148
BmsI GCATC 2 cut(s) 164, 276
BpmI CTGGAG 1 cut(s) 44
BsaHI GRCGYC 1 cut(s) 59
Bse1I ACTGG 1 cut(s) 276
BseBI CCWGG 1 cut(s) 148
BseGI GGATG 2 cut(s) 280, 291
BseMII CTCAG 2 cut(s) 49, 181
BseNI ACTGG 1 cut(s) 276
BseRI GAGGAG 1 cut(s) 213
BseXI GCAGC 3 cut(s) 143, 190, 193
Bsp143I GATC 1 cut(s) 177
BspCNI CTCAG 2 cut(s) 48, 180
BspPI GGATC 1 cut(s) 172
BsrI ACTGG 1 cut(s) 276
BssMI GATC 1 cut(s) 177
BssNI GRCGYC 1 cut(s) 59
Bst2UI CCWGG 1 cut(s) 148
Bst4CI ACNGT 1 cut(s) 222
BstACI GRCGYC 1 cut(s) 59
BstC8I GCNNGC 1 cut(s) 291
BstDEI CTNAG 4 cut(s) 35, 96, 167, 241
BstF5I GGATG 2 cut(s) 280, 291
BstKTI GATC 1 cut(s) 180
BstMBI GATC 1 cut(s) 177
BstMWI GCNNNNNNNGC 1 cut(s) 152
BstNI CCWGG 1 cut(s) 148
BstSCI CCNGG 1 cut(s) 146
BstV1I GCAGC 3 cut(s) 143, 190, 193
BtgZI GCGATG 2 cut(s) 116, 224
BtsCI GGATG 2 cut(s) 280, 291
BtsIMutI CAGTG 1 cut(s) 269
Cac8I GCNNGC 1 cut(s) 291
Cfr13I GGNCC 1 cut(s) 39
CseI GACGC 2 cut(s) 17, 67
CviAII CATG 1 cut(s) 249
CviJI RGCY 5 cut(s) 22, 134, 146, 166, 203
CviKI_1 RGCY 5 cut(s) 22, 134, 146, 166, 203
DdeI CTNAG 4 cut(s) 35, 96, 167, 241
DpnI GATC 1 cut(s) 179
DpnII GATC 1 cut(s) 177
Eco47I GGWCC 1 cut(s) 39
Eco57I CTGAAG 1 cut(s) 84
EcoRII CCWGG 1 cut(s) 146
FaeI CATG 1 cut(s) 252
FaiI YATR 2 cut(s) 250, 261
FatI CATG 1 cut(s) 248
Fnu4HI GCNGC 3 cut(s) 132, 204, 207
FokI GGATG 2 cut(s) 287, 298
Fsp4HI GCNGC 3 cut(s) 132, 204, 207
FspBI CTAG 1 cut(s) 234
GluI GCNGC 3 cut(s) 132, 204, 207
GsuI CTGGAG 1 cut(s) 44
HgaI GACGC 2 cut(s) 17, 67
Hin1I GRCGYC 1 cut(s) 59
Hin1II CATG 1 cut(s) 252
HincII GTYRAC 1 cut(s) 57
HindII GTYRAC 1 cut(s) 57
HinfI GANTC 2 cut(s) 245, 280
HphI GGTGA 1 cut(s) 17
Hpy166II GTNNAC 2 cut(s) 57, 114
Hpy188I TCNGA 4 cut(s) 85, 122, 182, 285
Hpy188III TCNNGA 2 cut(s) 195, 234
Hpy8I GTNNAC 2 cut(s) 57, 114
HpyCH4III ACNGT 1 cut(s) 222
HpyCH4V TGCA 4 cut(s) 90, 131, 269, 289
HpyF10VI GCNNNNNNNGC 1 cut(s) 152
HpyF3I CTNAG 4 cut(s) 35, 96, 167, 241
Hsp92I GRCGYC 1 cut(s) 59
Hsp92II CATG 1 cut(s) 252
Kzo9I GATC 1 cut(s) 177
LmnI GCTCC 1 cut(s) 200
LpnPI CCDG 9 cut(s) 8, 22, 32, 75, 120, 133, 160, 257, 275
Lsp1109I GCAGC 3 cut(s) 143, 190, 193
LweI GCATC 2 cut(s) 164, 276
MaeI CTAG 1 cut(s) 234
MaeIII GTNAC 1 cut(s) 5
MalI GATC 1 cut(s) 179
MboI GATC 1 cut(s) 177
MboII GAAGA 1 cut(s) 77
MlyI GAGTC 1 cut(s) 289
MmeI TCCRAC 2 cut(s) 205, 263
MnlI CCTC 3 cut(s) 99, 116, 191
MroXI GAANNNNTTC 1 cut(s) 261
MseI TTAA 1 cut(s) 301
MspA1I CMGCKG 1 cut(s) 134
MspR9I CCNGG 1 cut(s) 148
MvaI CCWGG 1 cut(s) 148
MwoI GCNNNNNNNGC 1 cut(s) 152
NdeII GATC 1 cut(s) 177
NlaIII CATG 1 cut(s) 252
NmuCI GTSAC 1 cut(s) 5
PdmI GAANNNNTTC 1 cut(s) 261
PfeI GAWTC 1 cut(s) 245
PkrI GCNGC 3 cut(s) 133, 205, 208
PleI GAGTC 1 cut(s) 288
PpsI GAGTC 1 cut(s) 288
Psp6I CCWGG 1 cut(s) 146
PspGI CCWGG 1 cut(s) 146
PspPI GGNCC 1 cut(s) 39
PvuII CAGCTG 1 cut(s) 134
SaqAI TTAA 1 cut(s) 301
SatI GCNGC 3 cut(s) 132, 204, 207
Sau3AI GATC 1 cut(s) 177
Sau96I GGNCC 1 cut(s) 39
SchI GAGTC 1 cut(s) 289
ScrFI CCNGG 1 cut(s) 148
SetI ASST 8 cut(s) 24, 41, 127, 136, 168, 192, 205, 242
SfaNI GCATC 2 cut(s) 164, 276
SinI GGWCC 1 cut(s) 39
SspMI CTAG 1 cut(s) 234
StyD4I CCNGG 1 cut(s) 146
TaaI ACNGT 1 cut(s) 222
TfiI GAWTC 1 cut(s) 245
Tru1I TTAA 1 cut(s) 301
Tru9I TTAA 1 cut(s) 301
TscAI CASTG 1 cut(s) 276
TseFI GTSAC 1 cut(s) 5
TseI GCWGC 3 cut(s) 131, 203, 206
Tsp45I GTSAC 1 cut(s) 5
TspDTI ATGAA 1 cut(s) 237
TspRI CASTG 1 cut(s) 276
VpaK11BI GGWCC 1 cut(s) 39
XbaI TCTAGA 1 cut(s) 233
XmnI GAANNNNTTC 1 cut(s) 261
XspI CTAG 1 cut(s) 234
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.