Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0005643

Physical Location & Seq

Genomic Coordinates Reverse (-)

1113621 .. 1117300

Gene Structure 3680 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G015500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 804 bp

ATGGGTGAAGCTCTGTTCGAGCTGGAGCAACATTTCAGGTCCAAACAGGTCAAATTGACGCCTGAAGAGAGAACGCTTCTTTTAACTTGCAAGTCCAAGGCTGTCAGGGAGTTTACATTCGGAGGTCTTGCTGCTGCTAGTGTTGCCTGGACAGCATCTTCAAAGCTGAATAAGCTTATTCGAATCAACCTTTCAGGAGGAGCTGCTGCTTTATTTGGACTGTGGAGATTCTCTAGATCCTTAGATTCATGTGTTAGCCATATTCTTTCTCAGGATGGAAGTAGGATGCAGGCGGAGTTAGCAACTATAATGGTGAGGAAGTACCAGAATGATCCTTCTAGGATGCGGCTTATCTCTAAACAGTTCTACTCCGAGAAAGTTTTTGATGATGCTACCTCAGATCAACCAACAATAAGGTGGCGTTATCGGAATTATTTTAGTGATAACATTACCCATGGTCGAGAAACAAATGACAGCGACTCTTACAGCAACTCTCAAGGTGATTCGGACAAGGACTCCCATGGTAACCCAAACACTACCTCTGGCAGTGATTCCCAGCACACCCAAAATGTCTCTGACAAAAAATGGGTCAAATTTGATCCCAAACAAGCTCCTACGAACTCGGGTGTTGATGCAATGGTAGACCCGCTTGATTGTGTTTTTGGTAGTACAACAAGTGAGGAGATTCTTCTTCCGAGTACCTCTAGCAGTTCCCCGAAAGCACACACTCGTAACCGGAAAAGATCTCACCGTAGGCGTCGGATGCACCATCAAGAAGACTTACCACACTACCAACAAACGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

268

Amino Acids

30.22

Weight (kDa)

9.22

Isoelectric Point (pI)

58.17

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005643)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G05430
fragaria_vesca	FvH4_4g16290 FvH4_4g16290 FvH4_4g16290
malus_domestica	MD07G1251800.v1.1 MD13G1194600.v1.1 MD13G1194700.v1.1 MD13G1194800.v1.1 MD16G1195500.v1.1
prunus_persica	Prupe.1G015500_v2.0.a1 Prupe.1G015500_v2.0.a1 Prupe.1G015500_v2.0.a1 Prupe.1G015500_v2.0.a1 Prupe.1G015500_v2.0.a1 Prupe.1G015500_v2.0.a1
pyrus_communis	pycom13g16700 pycom16g16470
rosa_chinensis	RchiOBHm_Chr4g0415951
rosa_laevigata	RLG00000008026
rosa_multiflora	Rmu_sc0005415.1_g000004 Rmu_sc0005922.1_g000001
rosa_roxburghii	Rroxscaffold_5G00359830
rosa_rugosa	Rorug04G0137200
rosa_samantha	Rh4AG199600 Rh4BG197100 Rh4CG210600 Rh4DG197400
rosa_wichuraiana	Rw4G016920

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	642
AciI	CCGC	3 cut(s)	293, 346, 647
AclWI	GGATC	3 cut(s)	231, 326, 593
AcsI	RAATTY	1 cut(s)	593
AcuI	CTGAAG	1 cut(s)	84
AcyI	GRCGYC	2 cut(s)	59, 757
AfaI	GTAC	3 cut(s)	323, 670, 700
AgsI	TTSAA	1 cut(s)	162
AjnI	CCWGG	1 cut(s)	146
AluBI	AGCT	6 cut(s)	11, 22, 166, 175, 203, 611
AluI	AGCT	6 cut(s)	11, 22, 166, 175, 203, 611
Alw26I	GTCTC	1 cut(s)	577
AlwI	GGATC	3 cut(s)	231, 326, 593
Ama87I	CYCGRG	1 cut(s)	622
ApeKI	GCWGC	4 cut(s)	131, 134, 203, 206
ApoI	RAATTY	1 cut(s)	593
ArsI	GACNNNNNNTTYG	2 cut(s)	573, 605
AspS9I	GGNCC	1 cut(s)	39
AsuHPI	GGTGA	4 cut(s)	17, 325, 512, 740
AsuII	TTCGAA	1 cut(s)	181
AvaI	CYCGRG	1 cut(s)	622
AvaII	GGWCC	1 cut(s)	39
BbsI	GAAGAC	1 cut(s)	783
BbvI	GCAGC	4 cut(s)	118, 121, 190, 193
BccI	CCATC	2 cut(s)	269, 777
BciT130I	CCWGG	1 cut(s)	148
BcoDI	GTCTC	1 cut(s)	577
BfaI	CTAG	4 cut(s)	138, 234, 339, 705
BglII	AGATCT	1 cut(s)	743
BisI	GCNGC	5 cut(s)	132, 135, 204, 207, 347
BlsI	GCNGC	5 cut(s)	133, 136, 205, 208, 348
Bme1390I	CCNGG	1 cut(s)	148
Bme18I	GGWCC	1 cut(s)	39
BmeT110I	CYCGRG	1 cut(s)	622
BmgT120I	GGNCC	1 cut(s)	39
BmrFI	CCNGG	1 cut(s)	148
BmsI	GCATC	6 cut(s)	164, 276, 333, 379, 622, 753
BpiI	GAAGAC	1 cut(s)	783
BpmI	CTGGAG	1 cut(s)	44
Bpu14I	TTCGAA	1 cut(s)	181
BpuEI	CTTGAG	1 cut(s)	480
BsaHI	GRCGYC	2 cut(s)	59, 757
BsaJI	CCNNGG	3 cut(s)	96, 454, 520
BsaWI	WCCGGW	1 cut(s)	735
BsaXI	ACNNNNNCTCC	2 cut(s)	500, 530
Bse3DI	GCAATG	1 cut(s)	642
BseBI	CCWGG	1 cut(s)	148
BseDI	CCNNGG	3 cut(s)	96, 454, 520
BseGI	GGATG	4 cut(s)	280, 291, 348, 768
BseMI	GCAATG	1 cut(s)	642
BseMII	CTCAG	2 cut(s)	284, 411
BseRI	GAGGAG	2 cut(s)	213, 695
BseXI	GCAGC	4 cut(s)	118, 121, 190, 193
BseYI	CCCAGC	1 cut(s)	555
BsiHKCI	CYCGRG	1 cut(s)	622
BsiSI	CCGG	1 cut(s)	736
BsmAI	GTCTC	1 cut(s)	577
BsoBI	CYCGRG	1 cut(s)	622
Bsp119I	TTCGAA	1 cut(s)	181
Bsp143I	GATC	5 cut(s)	236, 331, 400, 598, 743
Bsp19I	CCATGG	2 cut(s)	454, 520
BspACI	CCGC	3 cut(s)	293, 346, 647
BspCNI	CTCAG	2 cut(s)	283, 410
BspPI	GGATC	3 cut(s)	231, 326, 593
BspT104I	TTCGAA	1 cut(s)	181
BsrDI	GCAATG	1 cut(s)	642
BssECI	CCNNGG	3 cut(s)	96, 454, 520
BssMI	GATC	5 cut(s)	236, 331, 400, 598, 743
BssNI	GRCGYC	2 cut(s)	59, 757
BssT1I	CCWWGG	3 cut(s)	96, 454, 520
Bst2UI	CCWGG	1 cut(s)	148
Bst4CI	ACNGT	3 cut(s)	222, 363, 752
Bst6I	CTCTTC	1 cut(s)	60
BstACI	GRCGYC	2 cut(s)	59, 757
BstBI	TTCGAA	1 cut(s)	181
BstC8I	GCNNGC	1 cut(s)	291
BstDEI	CTNAG	3 cut(s)	241, 270, 397
BstDSI	CCRYGG	2 cut(s)	454, 520
BstEII	GGTNACC	1 cut(s)	524
BstF5I	GGATG	4 cut(s)	280, 291, 348, 768
BstKTI	GATC	5 cut(s)	239, 334, 403, 601, 746
BstMAI	GTCTC	1 cut(s)	577
BstMBI	GATC	5 cut(s)	236, 331, 400, 598, 743
BstMWI	GCNNNNNNNGC	5 cut(s)	143, 152, 172, 299, 763
BstNI	CCWGG	1 cut(s)	148
BstPI	GGTNACC	1 cut(s)	524
BstSCI	CCNGG	1 cut(s)	146
BstV1I	GCAGC	4 cut(s)	118, 121, 190, 193
BstV2I	GAAGAC	1 cut(s)	783
BstX2I	RGATCY	2 cut(s)	236, 743
BstYI	RGATCY	2 cut(s)	236, 743
BtgI	CCRYGG	2 cut(s)	454, 520
BtsCI	GGATG	4 cut(s)	280, 291, 348, 768
BtsI	GCAGTG	1 cut(s)	553
BtsIMutI	CAGTG	1 cut(s)	553
Cac8I	GCNNGC	1 cut(s)	291
Cfr13I	GGNCC	1 cut(s)	39
CseI	GACGC	2 cut(s)	67, 746
Csp6I	GTAC	3 cut(s)	322, 669, 699
CviAII	CATG	3 cut(s)	249, 455, 521
CviJI	RGCY	9 cut(s)	11, 22, 101, 166, 175, 203, 258, 349, 611
CviKI_1	RGCY	9 cut(s)	11, 22, 101, 166, 175, 203, 258, 349, 611
CviQI	GTAC	3 cut(s)	322, 669, 699
DdeI	CTNAG	3 cut(s)	241, 270, 397
DpnI	GATC	5 cut(s)	238, 333, 402, 600, 745
DpnII	GATC	5 cut(s)	236, 331, 400, 598, 743
Eam1104I	CTCTTC	1 cut(s)	60
EarI	CTCTTC	1 cut(s)	60
EciI	GGCGGA	1 cut(s)	308
Eco130I	CCWWGG	3 cut(s)	96, 454, 520
Eco47I	GGWCC	1 cut(s)	39
Eco57I	CTGAAG	1 cut(s)	84
Eco88I	CYCGRG	1 cut(s)	622
Eco91I	GGTNACC	1 cut(s)	524
EcoO65I	GGTNACC	1 cut(s)	524
EcoRII	CCWGG	1 cut(s)	146
EcoT14I	CCWWGG	3 cut(s)	96, 454, 520
ErhI	CCWWGG	3 cut(s)	96, 454, 520
FaeI	CATG	3 cut(s)	252, 458, 524
FaiI	YATR	5 cut(s)	250, 261, 308, 456, 522
FatI	CATG	3 cut(s)	248, 454, 520
FauI	CCCGC	1 cut(s)	654
FblI	GTMKAC	1 cut(s)	642
Fnu4HI	GCNGC	5 cut(s)	132, 135, 204, 207, 347
FokI	GGATG	4 cut(s)	287, 298, 355, 775
Fsp4HI	GCNGC	5 cut(s)	132, 135, 204, 207, 347
FspBI	CTAG	4 cut(s)	138, 234, 339, 705
GluI	GCNGC	5 cut(s)	132, 135, 204, 207, 347
GsaI	CCCAGC	1 cut(s)	559
GsuI	CTGGAG	1 cut(s)	44
HapII	CCGG	1 cut(s)	736
HgaI	GACGC	2 cut(s)	67, 746
Hin1I	GRCGYC	2 cut(s)	59, 757
Hin1II	CATG	3 cut(s)	252, 458, 524
HindIII	AAGCTT	1 cut(s)	173
HinfI	GANTC	8 cut(s)	183, 228, 245, 479, 503, 515, 551, 685
HpaII	CCGG	1 cut(s)	736
HphI	GGTGA	4 cut(s)	17, 325, 512, 740
Hpy166II	GTNNAC	2 cut(s)	114, 643
Hpy188I	TCNGA	8 cut(s)	122, 373, 400, 429, 508, 577, 696, 762
Hpy188III	TCNNGA	5 cut(s)	195, 234, 272, 461, 773
Hpy8I	GTNNAC	2 cut(s)	114, 643
Hpy99I	CGWCG	1 cut(s)	762
HpyAV	CCTTC	1 cut(s)	345
HpyCH4III	ACNGT	3 cut(s)	222, 363, 752
HpyCH4IV	ACGT	1 cut(s)	800
HpyCH4V	TGCA	4 cut(s)	90, 289, 635, 766
HpyF10VI	GCNNNNNNNGC	5 cut(s)	143, 152, 172, 299, 763
HpyF3I	CTNAG	3 cut(s)	241, 270, 397
HpySE526I	ACGT	1 cut(s)	800
Hsp92I	GRCGYC	2 cut(s)	59, 757
Hsp92II	CATG	3 cut(s)	252, 458, 524
Kzo9I	GATC	5 cut(s)	236, 331, 400, 598, 743
LmnI	GCTCC	3 cut(s)	25, 200, 616
Lsp1109I	GCAGC	4 cut(s)	118, 121, 190, 193
LweI	GCATC	6 cut(s)	164, 276, 333, 379, 622, 753
MaeI	CTAG	4 cut(s)	138, 234, 339, 705
MaeII	ACGT	1 cut(s)	800
MaeIII	GTNAC	2 cut(s)	524, 731
MalI	GATC	5 cut(s)	238, 333, 402, 600, 745
MboI	GATC	5 cut(s)	236, 331, 400, 598, 743
MboII	GAAGA	5 cut(s)	77, 150, 680, 683, 788
MflI	RGATCY	2 cut(s)	236, 743
MluCI	AATT	3 cut(s)	53, 430, 593
MlyI	GAGTC	2 cut(s)	473, 509
MmeI	TCCRAC	1 cut(s)	740
MnlI	CCTC	7 cut(s)	116, 191, 309, 406, 550, 673, 712
MseI	TTAA	1 cut(s)	83
MspI	CCGG	1 cut(s)	736
MspR9I	CCNGG	1 cut(s)	148
MvaI	CCWGG	1 cut(s)	148
MwoI	GCNNNNNNNGC	5 cut(s)	143, 152, 172, 299, 763
NcoI	CCATGG	2 cut(s)	454, 520
NdeII	GATC	5 cut(s)	236, 331, 400, 598, 743
NlaIII	CATG	3 cut(s)	252, 458, 524
NspV	TTCGAA	1 cut(s)	181
PfeI	GAWTC	6 cut(s)	183, 228, 245, 503, 551, 685
PkrI	GCNGC	5 cut(s)	133, 136, 205, 208, 348
PleI	GAGTC	2 cut(s)	473, 509
PpsI	GAGTC	2 cut(s)	473, 509
Psp6I	CCWGG	1 cut(s)	146
PspEI	GGTNACC	1 cut(s)	524
PspFI	CCCAGC	1 cut(s)	555
PspGI	CCWGG	1 cut(s)	146
PspPI	GGNCC	1 cut(s)	39
PsuI	RGATCY	2 cut(s)	236, 743
RsaI	GTAC	3 cut(s)	323, 670, 700
RsaNI	GTAC	3 cut(s)	322, 669, 699
SaqAI	TTAA	1 cut(s)	83
SatI	GCNGC	5 cut(s)	132, 135, 204, 207, 347
Sau3AI	GATC	5 cut(s)	236, 331, 400, 598, 743
Sau96I	GGNCC	1 cut(s)	39
SchI	GAGTC	2 cut(s)	473, 509
ScrFI	CCNGG	1 cut(s)	148
SfaNI	GCATC	6 cut(s)	164, 276, 333, 379, 622, 753
SfuI	TTCGAA	1 cut(s)	181
SinI	GGWCC	1 cut(s)	39
SmlI	CTYRAG	1 cut(s)	495
SmoI	CTYRAG	1 cut(s)	495
Sse9I	AATT	3 cut(s)	53, 430, 593
SsiI	CCGC	3 cut(s)	293, 346, 647
SspMI	CTAG	4 cut(s)	138, 234, 339, 705
StyD4I	CCNGG	1 cut(s)	146
StyI	CCWWGG	3 cut(s)	96, 454, 520
TaaI	ACNGT	3 cut(s)	222, 363, 752
TaiI	ACGT	1 cut(s)	803
TaqI	TCGA	3 cut(s)	18, 181, 460
TasI	AATT	3 cut(s)	53, 430, 593
TatI	WGTACW	1 cut(s)	668
TauI	GCSGC	1 cut(s)	349
TfiI	GAWTC	6 cut(s)	183, 228, 245, 503, 551, 685
Tru1I	TTAA	1 cut(s)	83
Tru9I	TTAA	1 cut(s)	83
TscAI	CASTG	1 cut(s)	553
TseI	GCWGC	4 cut(s)	131, 134, 203, 206
TspDTI	ATGAA	1 cut(s)	237
TspRI	CASTG	1 cut(s)	553
VpaK11BI	GGWCC	1 cut(s)	39
XapI	RAATTY	1 cut(s)	593
XbaI	TCTAGA	1 cut(s)	233
XcmI	CCANNNNNNNNNTGG	1 cut(s)	414
XmiI	GTMKAC	1 cut(s)	642
XspI	CTAG	4 cut(s)	138, 234, 339, 705

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.