Rh4CG210600

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4C
OG0005643
Physical Location & Seq
Forward (+)
44007179 .. 44011194
4016 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4CG210600.1

Sequence Viewer

Length: 684 bp
ATGTATCCTTTCCTTTATCTCAATCTCAATTCTTTTGTGGCAGCATCATCAAAGCTCAGTAAGATGATCCGACTTAACCTTTCGGGAGGAGCTGCTGCGATGTTTGGACTGTGGAGATTTTCTAGAGCCTTAGATTCATGTGTGGAACATATTCTTGCACTGGATGGGAGTCGGATGCAGGCAGAGTTGGCAACTATAATGGTGACAAAACATCCGAACGATCGTCAGAGGATGCAGCTTATCTCTAAGCAGTTCTATTGTGAGGAGGTTTTTGATGATTCAACCTCGGAACGCCCAAAAATAAGGTGGCGTTATCGGAATTACTTTAGTGATAATATTGCTCATGGTCAAAGAACACATGACAGCAACTCTCAATCTGATTCAGACAGTGTCTCCCATGGTGACTATCACAATTCCTTTGATGGTGATTCCCAAGACACCCAGAATGACTCTAACAAAAGACGGATCAATTTTGACCCTAGACGAGTTCCTATGAACTCCAGTATTGGTGCAACGGCAGACCCTTTTGAATATATCTTCGGTTATCCAGCACCAAAGGAGGAGCTTCATCTTCCAGACACCTCGAGTCTTTCCCCAAAAGCACAGGCTCGTAACCGTAGACGATCTCACCGCAAGCGTCGTACGCATCATCAGGAAGACATATCAAACCTCCAACATGTGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

227

Amino Acids

26.21

Weight (kDa)

9.09

Isoelectric Point (pI)

68.86

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 619
AciI CCGC 1 cut(s) 631
AclWI GGATC 2 cut(s) 61, 473
AfaI GTAC 1 cut(s) 643
AflIII ACRYGT 1 cut(s) 676
AgsI TTSAA 2 cut(s) 282, 530
AluBI AGCT 4 cut(s) 55, 92, 238, 565
AluI AGCT 4 cut(s) 55, 92, 238, 565
Alw26I GTCTC 1 cut(s) 397
AlwI GGATC 2 cut(s) 61, 473
Ama87I CYCGRG 1 cut(s) 583
ApeKI GCWGC 4 cut(s) 41, 92, 95, 235
Asp700I GAANNNNTTC 1 cut(s) 150
AsuHPI GGTGA 4 cut(s) 214, 413, 437, 620
AvaI CYCGRG 1 cut(s) 583
BbsI GAAGAC 1 cut(s) 663
BbvI GCAGC 4 cut(s) 53, 79, 82, 247
BccI CCATC 2 cut(s) 158, 416
BceAI ACGGC 1 cut(s) 531
BciVI GTATCC 1 cut(s) 15
BcoDI GTCTC 1 cut(s) 397
BfaI CTAG 2 cut(s) 123, 480
BfuI GTATCC 1 cut(s) 15
BisI GCNGC 4 cut(s) 42, 93, 96, 236
BlsI GCNGC 4 cut(s) 43, 94, 97, 237
BmeT110I CYCGRG 1 cut(s) 583
BmsI GCATC 4 cut(s) 53, 165, 222, 655
BpiI GAAGAC 1 cut(s) 663
BpmI CTGGAG 1 cut(s) 484
BsaJI CCNNGG 2 cut(s) 285, 397
BsaXI ACNNNNNCTCC 2 cut(s) 377, 407
Bse1I ACTGG 2 cut(s) 165, 501
BseDI CCNNGG 2 cut(s) 285, 397
BseGI GGATG 4 cut(s) 169, 180, 211, 237
BseMII CTCAG 1 cut(s) 70
BseNI ACTGG 2 cut(s) 165, 501
BseRI GAGGAG 3 cut(s) 102, 278, 575
BseXI GCAGC 4 cut(s) 53, 79, 82, 247
Bsh1285I CGRYCG 1 cut(s) 223
BsiEI CGRYCG 1 cut(s) 223
BsiHKCI CYCGRG 1 cut(s) 583
BsiWI CGTACG 1 cut(s) 641
BsmAI GTCTC 1 cut(s) 397
BsoBI CYCGRG 1 cut(s) 583
Bsp143I GATC 4 cut(s) 66, 220, 465, 623
Bsp19I CCATGG 1 cut(s) 397
BspACI CCGC 1 cut(s) 631
BspCNI CTCAG 1 cut(s) 69
BspPI GGATC 2 cut(s) 61, 473
BsrI ACTGG 2 cut(s) 165, 501
BssECI CCNNGG 2 cut(s) 285, 397
BssMI GATC 4 cut(s) 66, 220, 465, 623
BssT1I CCWWGG 1 cut(s) 397
Bst4CI ACNGT 3 cut(s) 111, 389, 617
BstC8I GCNNGC 2 cut(s) 180, 635
BstDEI CTNAG 3 cut(s) 56, 130, 246
BstDSI CCRYGG 1 cut(s) 397
BstF5I GGATG 4 cut(s) 169, 180, 211, 237
BstKTI GATC 4 cut(s) 69, 223, 468, 626
BstMAI GTCTC 1 cut(s) 397
BstMBI GATC 4 cut(s) 66, 220, 465, 623
BstMCI CGRYCG 1 cut(s) 223
BstMWI GCNNNNNNNGC 2 cut(s) 188, 643
BstNSI RCATGY 1 cut(s) 680
BstV1I GCAGC 4 cut(s) 53, 79, 82, 247
BstV2I GAAGAC 1 cut(s) 663
BsuI GTATCC 1 cut(s) 15
BtgI CCRYGG 1 cut(s) 397
BtgZI GCGATG 1 cut(s) 113
BtsCI GGATG 4 cut(s) 169, 180, 211, 237
BtsIMutI CAGTG 2 cut(s) 158, 394
Cac8I GCNNGC 2 cut(s) 180, 635
CseI GACGC 1 cut(s) 626
Csp6I GTAC 1 cut(s) 642
CviAII CATG 5 cut(s) 138, 344, 359, 398, 677
CviJI RGCY 6 cut(s) 55, 92, 128, 238, 565, 608
CviKI_1 RGCY 6 cut(s) 55, 92, 128, 238, 565, 608
CviQI GTAC 1 cut(s) 642
DdeI CTNAG 3 cut(s) 56, 130, 246
DpnI GATC 4 cut(s) 68, 222, 467, 625
DpnII GATC 4 cut(s) 66, 220, 465, 623
Eco130I CCWWGG 1 cut(s) 397
Eco88I CYCGRG 1 cut(s) 583
EcoT14I CCWWGG 1 cut(s) 397
ErhI CCWWGG 1 cut(s) 397
FaeI CATG 5 cut(s) 141, 347, 362, 401, 680
FatI CATG 5 cut(s) 137, 343, 358, 397, 676
FblI GTMKAC 1 cut(s) 619
Fnu4HI GCNGC 4 cut(s) 42, 93, 96, 236
FokI GGATG 4 cut(s) 176, 187, 198, 244
Fsp4HI GCNGC 4 cut(s) 42, 93, 96, 236
FspBI CTAG 2 cut(s) 123, 480
GluI GCNGC 4 cut(s) 42, 93, 96, 236
GsuI CTGGAG 1 cut(s) 484
HgaI GACGC 1 cut(s) 626
Hin1II CATG 5 cut(s) 141, 347, 362, 401, 680
HinfI GANTC 7 cut(s) 134, 169, 278, 380, 428, 449, 586
HphI GGTGA 4 cut(s) 214, 413, 437, 620
Hpy166II GTNNAC 1 cut(s) 620
Hpy188I TCNGA 8 cut(s) 71, 174, 216, 228, 289, 318, 379, 385
Hpy188III TCNNGA 4 cut(s) 84, 123, 575, 653
Hpy8I GTNNAC 1 cut(s) 620
Hpy99I CGWCG 1 cut(s) 642
HpyCH4III ACNGT 3 cut(s) 111, 389, 617
HpyCH4V TGCA 4 cut(s) 158, 178, 235, 512
HpyF10VI GCNNNNNNNGC 2 cut(s) 188, 643
HpyF3I CTNAG 3 cut(s) 56, 130, 246
Hsp92II CATG 5 cut(s) 141, 347, 362, 401, 680
Kzo9I GATC 4 cut(s) 66, 220, 465, 623
LmnI GCTCC 2 cut(s) 89, 562
LpnPI CCDG 8 cut(s) 146, 164, 455, 514, 561, 588, 590, 638
Lsp1109I GCAGC 4 cut(s) 53, 79, 82, 247
LweI GCATC 4 cut(s) 53, 165, 222, 655
MaeI CTAG 2 cut(s) 123, 480
MaeIII GTNAC 3 cut(s) 202, 401, 611
MalI GATC 4 cut(s) 68, 222, 467, 625
MboI GATC 4 cut(s) 66, 220, 465, 623
MboII GAAGA 3 cut(s) 529, 563, 668
MluCI AATT 4 cut(s) 28, 319, 412, 469
MlyI GAGTC 3 cut(s) 178, 443, 595
MmeI TCCRAC 2 cut(s) 94, 152
MnlI CCTC 8 cut(s) 80, 222, 256, 259, 295, 553, 592, 680
MroXI GAANNNNTTC 1 cut(s) 150
MseI TTAA 1 cut(s) 75
MwoI GCNNNNNNNGC 2 cut(s) 188, 643
NcoI CCATGG 1 cut(s) 397
NdeII GATC 4 cut(s) 66, 220, 465, 623
NlaIII CATG 5 cut(s) 141, 347, 362, 401, 680
NmuCI GTSAC 2 cut(s) 202, 401
NspI RCATGY 1 cut(s) 680
PaeR7I CTCGAG 1 cut(s) 583
PciI ACATGT 1 cut(s) 676
PdmI GAANNNNTTC 1 cut(s) 150
PfeI GAWTC 4 cut(s) 134, 278, 380, 428
Pfl23II CGTACG 1 cut(s) 641
PflFI GACNNNGTC 1 cut(s) 389
PkrI GCNGC 4 cut(s) 43, 94, 97, 237
Ple19I CGATCG 1 cut(s) 223
PleI GAGTC 3 cut(s) 177, 443, 594
PpsI GAGTC 3 cut(s) 177, 443, 594
PscI ACATGT 1 cut(s) 676
PspLI CGTACG 1 cut(s) 641
PspXI VCTCGAGB 1 cut(s) 583
PsyI GACNNNGTC 1 cut(s) 389
PvuI CGATCG 1 cut(s) 223
RsaI GTAC 1 cut(s) 643
RsaNI GTAC 1 cut(s) 642
SaqAI TTAA 1 cut(s) 75
SatI GCNGC 4 cut(s) 42, 93, 96, 236
Sau3AI GATC 4 cut(s) 66, 220, 465, 623
SchI GAGTC 3 cut(s) 178, 443, 595
SfaNI GCATC 4 cut(s) 53, 165, 222, 655
Sfr274I CTCGAG 1 cut(s) 583
SlaI CTCGAG 1 cut(s) 583
SmlI CTYRAG 1 cut(s) 583
SmoI CTYRAG 1 cut(s) 583
Sse9I AATT 4 cut(s) 28, 319, 412, 469
SsiI CCGC 1 cut(s) 631
SspI AATATT 1 cut(s) 337
SspMI CTAG 2 cut(s) 123, 480
StyI CCWWGG 1 cut(s) 397
TaaI ACNGT 3 cut(s) 111, 389, 617
TaqI TCGA 1 cut(s) 584
TasI AATT 4 cut(s) 28, 319, 412, 469
TfiI GAWTC 4 cut(s) 134, 278, 380, 428
Tru1I TTAA 1 cut(s) 75
Tru9I TTAA 1 cut(s) 75
TscAI CASTG 2 cut(s) 165, 394
TseFI GTSAC 2 cut(s) 202, 401
TseI GCWGC 4 cut(s) 41, 92, 95, 235
Tsp45I GTSAC 2 cut(s) 202, 401
TspDTI ATGAA 3 cut(s) 126, 509, 557
TspGWI ACGGA 1 cut(s) 478
TspRI CASTG 2 cut(s) 165, 394
Tth111I GACNNNGTC 1 cut(s) 389
XbaI TCTAGA 1 cut(s) 122
XceI RCATGY 1 cut(s) 680
XcmI CCANNNNNNNNNTGG 1 cut(s) 303
XhoI CTCGAG 1 cut(s) 583
XmiI GTMKAC 1 cut(s) 619
XmnI GAANNNNTTC 1 cut(s) 150
XspI CTAG 2 cut(s) 123, 480
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.