Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4D

Orthogroup ID

OG0005643

Physical Location & Seq

Genomic Coordinates Forward (+)

38485800 .. 38489881

Gene Structure 4082 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4DG197400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 648 bp

ATGGGTGACGCTTTGTTTGAGCTGGAGAACAATCTCAGGTCCAAACAGGCGAAGTTGACGCCTGAAGAAATAAGGGTTCTTTCAGATTGCAAGTCTAAGGCGATGAGGGAGTTCACATTCGGAGGTCTTGCAGCTGGTGTTGTAGCCTGGACAGCATCATCAAAGCTCAGTAAGATGATCCGACTTAACCTTTCGGGAGGAGCTGCTGCGATGTTTGGACTGTGGAGATTTTCTAGAGCCTTAGATTCATGTGTGGAACATATTCTTGCACTGGATGGGAGTCGGATGCAGGCAGAGTTGGCAACTATAATGGTGACAAAACATCAGAACGATCGTCAGAGGATGCAGCTTATCTCTAAGCAGTTCTATTGTGAGGAGGTTTTTGATGATTCAACCGCGGAACGCCCAAAAATAAGGTGGCGTTATCGGAATTACTTTAGTGATAATATTGCTCATGGTCAAAGAACACATGACAGCAACTCTCAATCTGATTCAGACAGTGTCTCCCATGGTGACTATCCCAATTCCTTTGATGGTGATTCCCAAGACACCCAAAGTGACACCCAGAATGACTCTAACAAAAGACGGATCAATTTTGACCCTAGACGAGTTCCTGTAAGTCTACTAATCGATCATTTATTTTCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

215

Amino Acids

24.42

Weight (kDa)

6.59

Isoelectric Point (pI)

54.21

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005643)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G05430
fragaria_vesca	FvH4_4g16290 FvH4_4g16290 FvH4_4g16290
malus_domestica	MD07G1251800.v1.1 MD13G1194600.v1.1 MD13G1194700.v1.1 MD13G1194800.v1.1 MD16G1195500.v1.1
prunus_persica	Prupe.1G015500_v2.0.a1 Prupe.1G015500_v2.0.a1 Prupe.1G015500_v2.0.a1 Prupe.1G015500_v2.0.a1 Prupe.1G015500_v2.0.a1 Prupe.1G015500_v2.0.a1
pyrus_communis	pycom13g16700 pycom16g16470
rosa_chinensis	RchiOBHm_Chr4g0415951
rosa_laevigata	RLG00000008026
rosa_multiflora	Rmu_sc0005415.1_g000004 Rmu_sc0005922.1_g000001
rosa_roxburghii	Rroxscaffold_5G00359830
rosa_rugosa	Rorug04G0137200
rosa_samantha	Rh4AG199600 Rh4BG197100 Rh4CG210600 Rh4DG197400
rosa_wichuraiana	Rw4G016920

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	622
AccII	CGCG	1 cut(s)	398
AciI	CCGC	2 cut(s)	396, 398
AclWI	GGATC	2 cut(s)	172, 596
AcuI	CTGAAG	1 cut(s)	84
AcyI	GRCGYC	1 cut(s)	59
AgsI	TTSAA	1 cut(s)	393
AjnI	CCWGG	1 cut(s)	146
AluBI	AGCT	5 cut(s)	22, 134, 166, 203, 349
AluI	AGCT	5 cut(s)	22, 134, 166, 203, 349
Alw26I	GTCTC	1 cut(s)	508
AlwI	GGATC	2 cut(s)	172, 596
ApeKI	GCWGC	4 cut(s)	131, 203, 206, 346
ArsI	GACNNNNNNTTYG	1 cut(s)	31
Asp700I	GAANNNNTTC	1 cut(s)	261
AspS9I	GGNCC	1 cut(s)	39
AsuHPI	GGTGA	4 cut(s)	17, 325, 524, 548
AvaII	GGWCC	1 cut(s)	39
BbvI	GCAGC	4 cut(s)	143, 190, 193, 358
BccI	CCATC	2 cut(s)	269, 527
BciT130I	CCWGG	1 cut(s)	148
BcoDI	GTCTC	1 cut(s)	508
BfaI	CTAG	2 cut(s)	234, 603
BisI	GCNGC	4 cut(s)	132, 204, 207, 347
BlsI	GCNGC	4 cut(s)	133, 205, 208, 348
Bme1390I	CCNGG	1 cut(s)	148
Bme18I	GGWCC	1 cut(s)	39
BmgT120I	GGNCC	1 cut(s)	39
BmrFI	CCNGG	1 cut(s)	148
BmsI	GCATC	3 cut(s)	164, 276, 333
BpmI	CTGGAG	1 cut(s)	44
Bsa29I	ATCGAT	1 cut(s)	630
BsaHI	GRCGYC	1 cut(s)	59
BsaJI	CCNNGG	2 cut(s)	396, 508
BsaXI	ACNNNNNCTCC	2 cut(s)	488, 518
Bse1I	ACTGG	1 cut(s)	276
BseBI	CCWGG	1 cut(s)	148
BseCI	ATCGAT	1 cut(s)	630
BseDI	CCNNGG	2 cut(s)	396, 508
BseGI	GGATG	3 cut(s)	280, 291, 348
BseMII	CTCAG	2 cut(s)	49, 181
BseNI	ACTGG	1 cut(s)	276
BseRI	GAGGAG	2 cut(s)	213, 389
BseXI	GCAGC	4 cut(s)	143, 190, 193, 358
Bsh1236I	CGCG	1 cut(s)	398
Bsh1285I	CGRYCG	1 cut(s)	334
BshVI	ATCGAT	1 cut(s)	630
BsiEI	CGRYCG	1 cut(s)	334
BsmAI	GTCTC	1 cut(s)	508
Bsp143I	GATC	4 cut(s)	177, 331, 588, 631
Bsp19I	CCATGG	1 cut(s)	508
BspACI	CCGC	2 cut(s)	396, 398
BspCNI	CTCAG	2 cut(s)	48, 180
BspDI	ATCGAT	1 cut(s)	630
BspFNI	CGCG	1 cut(s)	398
BspPI	GGATC	2 cut(s)	172, 596
BsrI	ACTGG	1 cut(s)	276
BssECI	CCNNGG	2 cut(s)	396, 508
BssMI	GATC	4 cut(s)	177, 331, 588, 631
BssNI	GRCGYC	1 cut(s)	59
BssT1I	CCWWGG	1 cut(s)	508
Bst2UI	CCWGG	1 cut(s)	148
Bst4CI	ACNGT	2 cut(s)	222, 500
BstACI	GRCGYC	1 cut(s)	59
BstC8I	GCNNGC	1 cut(s)	291
BstDEI	CTNAG	5 cut(s)	35, 96, 167, 241, 357
BstDSI	CCRYGG	2 cut(s)	396, 508
BstF5I	GGATG	3 cut(s)	280, 291, 348
BstFNI	CGCG	1 cut(s)	398
BstKTI	GATC	4 cut(s)	180, 334, 591, 634
BstMAI	GTCTC	1 cut(s)	508
BstMBI	GATC	4 cut(s)	177, 331, 588, 631
BstMCI	CGRYCG	1 cut(s)	334
BstMWI	GCNNNNNNNGC	2 cut(s)	152, 299
BstNI	CCWGG	1 cut(s)	148
BstSCI	CCNGG	1 cut(s)	146
BstUI	CGCG	1 cut(s)	398
BstV1I	GCAGC	4 cut(s)	143, 190, 193, 358
Bsu15I	ATCGAT	1 cut(s)	630
BsuTUI	ATCGAT	1 cut(s)	630
BtgI	CCRYGG	2 cut(s)	396, 508
BtgZI	GCGATG	2 cut(s)	116, 224
BtsCI	GGATG	3 cut(s)	280, 291, 348
BtsIMutI	CAGTG	2 cut(s)	269, 505
Cac8I	GCNNGC	1 cut(s)	291
Cfr13I	GGNCC	1 cut(s)	39
Cfr42I	CCGCGG	1 cut(s)	399
ClaI	ATCGAT	1 cut(s)	630
CseI	GACGC	2 cut(s)	17, 67
CviAII	CATG	4 cut(s)	249, 455, 470, 509
CviJI	RGCY	7 cut(s)	22, 134, 146, 166, 203, 239, 349
CviKI_1	RGCY	7 cut(s)	22, 134, 146, 166, 203, 239, 349
DdeI	CTNAG	5 cut(s)	35, 96, 167, 241, 357
DpnI	GATC	4 cut(s)	179, 333, 590, 633
DpnII	GATC	4 cut(s)	177, 331, 588, 631
Eco130I	CCWWGG	1 cut(s)	508
Eco47I	GGWCC	1 cut(s)	39
Eco57I	CTGAAG	1 cut(s)	84
EcoRII	CCWGG	1 cut(s)	146
EcoT14I	CCWWGG	1 cut(s)	508
ErhI	CCWWGG	1 cut(s)	508
FaeI	CATG	4 cut(s)	252, 458, 473, 512
FaiI	YATR	6 cut(s)	250, 261, 308, 456, 471, 510
FatI	CATG	4 cut(s)	248, 454, 469, 508
FblI	GTMKAC	1 cut(s)	622
Fnu4HI	GCNGC	4 cut(s)	132, 204, 207, 347
FokI	GGATG	3 cut(s)	287, 298, 355
Fsp4HI	GCNGC	4 cut(s)	132, 204, 207, 347
FspBI	CTAG	2 cut(s)	234, 603
GluI	GCNGC	4 cut(s)	132, 204, 207, 347
GsuI	CTGGAG	1 cut(s)	44
HgaI	GACGC	2 cut(s)	17, 67
Hin1I	GRCGYC	1 cut(s)	59
Hin1II	CATG	4 cut(s)	252, 458, 473, 512
HincII	GTYRAC	1 cut(s)	57
HindII	GTYRAC	1 cut(s)	57
HinfI	GANTC	6 cut(s)	245, 280, 389, 491, 539, 572
HphI	GGTGA	4 cut(s)	17, 325, 524, 548
Hpy166II	GTNNAC	3 cut(s)	57, 114, 623
Hpy188I	TCNGA	9 cut(s)	85, 122, 182, 285, 327, 339, 429, 490, 496
Hpy188III	TCNNGA	2 cut(s)	195, 234
Hpy8I	GTNNAC	3 cut(s)	57, 114, 623
HpyCH4III	ACNGT	2 cut(s)	222, 500
HpyCH4V	TGCA	5 cut(s)	90, 131, 269, 289, 346
HpyF10VI	GCNNNNNNNGC	2 cut(s)	152, 299
HpyF3I	CTNAG	5 cut(s)	35, 96, 167, 241, 357
Hsp92I	GRCGYC	1 cut(s)	59
Hsp92II	CATG	4 cut(s)	252, 458, 473, 512
KspI	CCGCGG	1 cut(s)	399
Kzo9I	GATC	4 cut(s)	177, 331, 588, 631
LmnI	GCTCC	1 cut(s)	200
Lsp1109I	GCAGC	4 cut(s)	143, 190, 193, 358
LweI	GCATC	3 cut(s)	164, 276, 333
MaeI	CTAG	2 cut(s)	234, 603
MaeIII	GTNAC	4 cut(s)	5, 313, 512, 557
MalI	GATC	4 cut(s)	179, 333, 590, 633
MboI	GATC	4 cut(s)	177, 331, 588, 631
MboII	GAAGA	1 cut(s)	77
MluCI	AATT	3 cut(s)	430, 523, 592
MlyI	GAGTC	2 cut(s)	289, 566
MmeI	TCCRAC	2 cut(s)	205, 263
MnlI	CCTC	6 cut(s)	99, 116, 191, 333, 367, 370
MroXI	GAANNNNTTC	1 cut(s)	261
MseI	TTAA	2 cut(s)	186, 646
MspA1I	CMGCKG	2 cut(s)	134, 398
MspR9I	CCNGG	1 cut(s)	148
MvaI	CCWGG	1 cut(s)	148
MvnI	CGCG	1 cut(s)	398
MwoI	GCNNNNNNNGC	2 cut(s)	152, 299
NcoI	CCATGG	1 cut(s)	508
NdeII	GATC	4 cut(s)	177, 331, 588, 631
NlaIII	CATG	4 cut(s)	252, 458, 473, 512
NmuCI	GTSAC	4 cut(s)	5, 313, 512, 557
PdmI	GAANNNNTTC	1 cut(s)	261
PfeI	GAWTC	4 cut(s)	245, 389, 491, 539
PflFI	GACNNNGTC	1 cut(s)	500
PkrI	GCNGC	4 cut(s)	133, 205, 208, 348
Ple19I	CGATCG	1 cut(s)	334
PleI	GAGTC	2 cut(s)	288, 566
PpsI	GAGTC	2 cut(s)	288, 566
Psp6I	CCWGG	1 cut(s)	146
PspGI	CCWGG	1 cut(s)	146
PspPI	GGNCC	1 cut(s)	39
PsyI	GACNNNGTC	1 cut(s)	500
PvuI	CGATCG	1 cut(s)	334
PvuII	CAGCTG	1 cut(s)	134
SacII	CCGCGG	1 cut(s)	399
SaqAI	TTAA	2 cut(s)	186, 646
SatI	GCNGC	4 cut(s)	132, 204, 207, 347
Sau3AI	GATC	4 cut(s)	177, 331, 588, 631
Sau96I	GGNCC	1 cut(s)	39
SchI	GAGTC	2 cut(s)	289, 566
ScrFI	CCNGG	1 cut(s)	148
SfaNI	GCATC	3 cut(s)	164, 276, 333
Sfr303I	CCGCGG	1 cut(s)	399
SgrBI	CCGCGG	1 cut(s)	399
SinI	GGWCC	1 cut(s)	39
Sse9I	AATT	3 cut(s)	430, 523, 592
SsiI	CCGC	2 cut(s)	396, 398
SspI	AATATT	1 cut(s)	448
SspMI	CTAG	2 cut(s)	234, 603
StyD4I	CCNGG	1 cut(s)	146
StyI	CCWWGG	1 cut(s)	508
TaaI	ACNGT	2 cut(s)	222, 500
TaqI	TCGA	1 cut(s)	630
TasI	AATT	3 cut(s)	430, 523, 592
TfiI	GAWTC	4 cut(s)	245, 389, 491, 539
Tru1I	TTAA	2 cut(s)	186, 646
Tru9I	TTAA	2 cut(s)	186, 646
TscAI	CASTG	2 cut(s)	276, 505
TseFI	GTSAC	4 cut(s)	5, 313, 512, 557
TseI	GCWGC	4 cut(s)	131, 203, 206, 346
Tsp45I	GTSAC	4 cut(s)	5, 313, 512, 557
TspDTI	ATGAA	1 cut(s)	237
TspGWI	ACGGA	1 cut(s)	601
TspRI	CASTG	2 cut(s)	276, 505
Tth111I	GACNNNGTC	1 cut(s)	500
VpaK11BI	GGWCC	1 cut(s)	39
XbaI	TCTAGA	1 cut(s)	233
XcmI	CCANNNNNNNNNTGG	1 cut(s)	414
XmiI	GTMKAC	1 cut(s)	622
XmnI	GAANNNNTTC	1 cut(s)	261
XspI	CTAG	2 cut(s)	234, 603

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.