Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0006204

Physical Location & Seq

Genomic Coordinates Forward (+)

1969658 .. 1974526

Gene Structure 4869 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G06470.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1245 bp

ATGGAGCAAAGAGTGCAGCTCCGTGTTGGTACAATGGAAACCATATCCAATGAGGGAGATGTAGATAGAGAACAGGTTTTAGAGACTTTTGGTATTGAAAATGAGACCGGGAAGGAGACAAACGGCTCCAGAAGTTTTGATGTTGGTTACAGTTCCGGTGATACCCTTGAAACATTGCCTAAAGCGTCAAAAGTAGATATCTCTCCTGCTGACGTGCTTAAAACACTCTTCTTTATACTTGTATGGTACACTTTCAGCACATTTCTGACTCTGTACAACAAAACTCTCTTAGGAGATGATTTAGGGAAATTTCCTGCTCCCTTATTAATGAATACCATTCACTTTTCTATTCAAGCTGTTTTATCAAAGATGATAACATGGTATTGGTCGGGGAGATTTCAGCCTGATGTTACCATATCATGGAGAGACTATTTCGTTAGAGTTGTACCAACAGCGCTTGGAACTGCTATGGATATAAACCTAAGTAACGAGTCACTTGTCTTCATATCGGTTACATTTGCAACAATGTGCAAATCTGCAGCCCCAATATTTCTTCTTCTGTTTGCTTTTGCCTTCAGGCTGGAGTCTCCAAGCCTGAAACTTTTTGGCATTATTTCAGTGATCTCAGCAGGAGTGTTGTTAACAGTTGCAAAGGAGACAGAATTTGAGTTTTGGGGTTTCGTTTTTGTCATGCTTGCTGCTGTCATGTCTGGTTTCCGCTGGTGTATGACGCAAGTTCTTTTGCAGAAAGAAACATTTGGACTGAAAAATCCATTCATATTCATGAGCTGTGTGGCACCAGTGATGGCTATAGCGACTGGTCTTCTTTCTCTCCTTCTGGATCCATGGAGTGAATTTAGAGACAACAAATACTTTGATAGTGGAGCACATTTTGCTCGAACTTGTTTTTTGATGCTTTTTGGCGGAGCACTGGCTTTTTGTATGGTTTTGACAGAGTATGTCCTTGTTTCCGTAACTAGTGCTGTAACCGTCACAATAGCGGGAGTTGTCAAAGAGGCTGTCACCATAGTGGTTGCAGTGTTTTACTTCCATGACGAATTTACGTGGCTGAAAGGTGTGGGTCTGATGATCATTATGGTTGGTGTCAGTTTGTTCAACTGGTACAAATATGATAAACTACAAAAGGGGCACAAAACAGAGGAAGAGAAGCAGTTACAAGCTCCAAGTCAGACTGGAAAATATGTGATTCTTGATGAGATGGATGATCAAGAAAATAGTCCCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005793 GO:0006810 GO:0006811 GO:0006820 GO:0008150 GO:0015711 GO:0015780 GO:0015786 GO:0015931 GO:0034220 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0051179 GO:0051234 GO:0055085 GO:0071702 GO:0071705 GO:0090481 GO:0098656 GO:1901264

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TPT

Protein Analysis

414

Amino Acids

46.45

Weight (kDa)

4.99

Isoelectric Point (pI)

33.8

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TPT	PF03151	74 - 373	1.4e-29	Triose-phosphate Transporter family
UAA	PF08449	113 - 373	3.6e-10	UAA transporter family
PUNUT	PF16913	142 - 378	1.4e-06	Purine nucleobase transmembrane transport

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006204)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G06470 AT1G06470 AT1G06470 AT1G06470
fragaria_vesca	FvH4_6g27881 FvH4_6g27890
malus_domestica	MD09G1233800.v1.1 MD17G1230200.v1.1
prunus_persica	Prupe.3G108900_v2.0.a1 Prupe.3G108900_v2.0.a1
pyrus_communis	pycom09g15210 pycom09g15220 pycom17g23310
rosa_chinensis	RchiOBHm_Chr2g0131361
rosa_laevigata	RLG00000019180
rosa_multiflora	Rmu_ssc0000019.1_g000035
rosa_roxburghii	Rroxscaffold_2G00113060 Rroxscaffold_4G00296720 Rroxscaffold_4G00296730 Rroxscaffold_4G00296740
rosa_rugosa	Rorug02G0296000 Rorug02G0296100
rosa_samantha	Rh2AG349300 Rh2BG356300 Rh2CG335200 Rh2DG374200
rosa_wichuraiana	Rw2G028350

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	796
AccB7I	CCANNNNNTGG	1 cut(s)	420
AciI	CCGC	3 cut(s)	718, 924, 1001
AclWI	GGATC	2 cut(s)	836, 849
AcsI	RAATTY	4 cut(s)	308, 662, 854, 1058
AcuI	CTGAAG	1 cut(s)	559
AfaI	GTAC	5 cut(s)	31, 248, 275, 447, 1124
AfeI	AGCGCT	1 cut(s)	456
AfiI	CCNNNNNNNGG	1 cut(s)	420
AgsI	TTSAA	4 cut(s)	98, 170, 353, 1117
AhlI	ACTAGT	1 cut(s)	977
AjiI	CACGTC	1 cut(s)	214
AleI	CACNNNNGTG	1 cut(s)	1028
AluBI	AGCT	4 cut(s)	19, 356, 789, 1181
AluI	AGCT	4 cut(s)	19, 356, 789, 1181
Alw21I	GWGCWC	2 cut(s)	889, 931
Alw26I	GTCTC	7 cut(s)	77, 98, 110, 420, 591, 650, 855
AlwI	GGATC	2 cut(s)	836, 849
Aor51HI	AGCGCT	1 cut(s)	456
ApeKI	GCWGC	3 cut(s)	16, 539, 698
ApoI	RAATTY	4 cut(s)	308, 662, 854, 1058
ArsI	GACNNNNNNTTYG	2 cut(s)	1005, 1037
AseI	ATTAAT	1 cut(s)	326
AspLEI	GCGC	1 cut(s)	457
AsuC2I	CCSGG	1 cut(s)	109
AsuHPI	GGTGA	2 cut(s)	170, 1015
BaeGI	GKGCMC	1 cut(s)	1152
BamHI	GGATCC	1 cut(s)	841
BanI	GGYRCC	1 cut(s)	796
BbsI	GAAGAC	2 cut(s)	493, 815
Bbv12I	GWGCWC	2 cut(s)	889, 931
BbvI	GCAGC	3 cut(s)	28, 551, 685
BccI	CCATC	2 cut(s)	799, 1213
BceAI	ACGGC	1 cut(s)	139
BclI	TGATCA	2 cut(s)	1089, 1225
BcnI	CCSGG	1 cut(s)	109
BcoDI	GTCTC	7 cut(s)	77, 98, 110, 420, 591, 650, 855
BcuI	ACTAGT	1 cut(s)	977
BfaI	CTAG	1 cut(s)	978
BfmI	CTRYAG	2 cut(s)	537, 810
BfoI	RGCGCY	1 cut(s)	458
BisI	GCNGC	3 cut(s)	17, 540, 699
BlsI	GCNGC	3 cut(s)	18, 541, 700
Bme1390I	CCNGG	1 cut(s)	109
BmgBI	CACGTC	1 cut(s)	214
BmiI	GGNNCC	3 cut(s)	127, 798, 843
BmrFI	CCNGG	1 cut(s)	109
BmsI	GCATC	1 cut(s)	903
BpiI	GAAGAC	2 cut(s)	493, 815
BplI	GAGNNNNNCTC	1 cut(s)	35
BpmI	CTGGAG	2 cut(s)	112, 602
BpuMI	CCSGG	1 cut(s)	109
BsaAI	YACGTR	1 cut(s)	1065
BsaI	GGTCTC	1 cut(s)	98
BsaJI	CCNNGG	1 cut(s)	845
BsaWI	WCCGGW	1 cut(s)	155
Bsc4I	CCNNNNNNNGG	1 cut(s)	420
Bse1I	ACTGG	5 cut(s)	800, 823, 936, 1124, 1198
Bse3DI	GCAATG	1 cut(s)	173
BseDI	CCNNGG	1 cut(s)	845
BseGI	GGATG	1 cut(s)	1228
BseLI	CCNNNNNNNGG	1 cut(s)	420
BseMI	GCAATG	1 cut(s)	173
BseMII	CTCAG	1 cut(s)	639
BseNI	ACTGG	5 cut(s)	800, 823, 936, 1124, 1198
BseSI	GKGCMC	1 cut(s)	1152
BseXI	GCAGC	3 cut(s)	28, 551, 685
BsgI	GTGCAG	1 cut(s)	35
BshNI	GGYRCC	1 cut(s)	796
BsiHKAI	GWGCWC	2 cut(s)	889, 931
BsiSI	CCGG	2 cut(s)	108, 156
BslFI	GGGAC	1 cut(s)	1224
BslI	CCNNNNNNNGG	1 cut(s)	420
BsmAI	GTCTC	7 cut(s)	77, 98, 110, 420, 591, 650, 855
BsmFI	GGGAC	1 cut(s)	1224
Bso31I	GGTCTC	1 cut(s)	98
Bsp1286I	GDGCHC	3 cut(s)	889, 931, 1152
Bsp1407I	TGTACA	1 cut(s)	273
Bsp143I	GATC	4 cut(s)	621, 841, 1089, 1225
Bsp19I	CCATGG	1 cut(s)	845
BspACI	CCGC	3 cut(s)	718, 924, 1001
BspCNI	CTCAG	1 cut(s)	638
BspHI	TCATGA	1 cut(s)	783
BspLI	GGNNCC	3 cut(s)	127, 798, 843
BspMAI	CTGCAG	1 cut(s)	541
BspPI	GGATC	2 cut(s)	836, 849
BspT107I	GGYRCC	1 cut(s)	796
BspTNI	GGTCTC	1 cut(s)	98
BsrDI	GCAATG	1 cut(s)	173
BsrGI	TGTACA	1 cut(s)	273
BsrI	ACTGG	5 cut(s)	800, 823, 936, 1124, 1198
BssECI	CCNNGG	1 cut(s)	845
BssMI	GATC	4 cut(s)	621, 841, 1089, 1225
BssT1I	CCWWGG	1 cut(s)	845
Bst4CI	ACNGT	3 cut(s)	152, 646, 991
Bst6I	CTCTTC	2 cut(s)	233, 1158
BstAPI	GCANNNNNTGC	2 cut(s)	13, 893
BstAUI	TGTACA	1 cut(s)	273
BstBAI	YACGTR	1 cut(s)	1065
BstC8I	GCNNGC	1 cut(s)	696
BstDEI	CTNAG	3 cut(s)	289, 482, 625
BstDSI	CCRYGG	1 cut(s)	845
BstF5I	GGATG	1 cut(s)	1228
BstH2I	RGCGCY	1 cut(s)	458
BstHHI	GCGC	1 cut(s)	457
BstKTI	GATC	4 cut(s)	624, 844, 1092, 1228
BstMAI	GTCTC	7 cut(s)	77, 98, 110, 420, 591, 650, 855
BstMBI	GATC	4 cut(s)	621, 841, 1089, 1225
BstMWI	GCNNNNNNNGC	2 cut(s)	13, 893
BstSCI	CCNGG	1 cut(s)	107
BstSFI	CTRYAG	2 cut(s)	537, 810
BstSLI	GKGCMC	1 cut(s)	1152
BstV1I	GCAGC	3 cut(s)	28, 551, 685
BstV2I	GAAGAC	2 cut(s)	493, 815
BstX2I	RGATCY	1 cut(s)	841
BstYI	RGATCY	1 cut(s)	841
BtgI	CCRYGG	1 cut(s)	845
BtrI	CACGTC	1 cut(s)	214
BtsCI	GGATG	1 cut(s)	1228
BtsI	GCAGTG	1 cut(s)	1044
BtsIMutI	CAGTG	4 cut(s)	624, 807, 929, 1044
Cac8I	GCNNGC	1 cut(s)	696
CciI	TCATGA	1 cut(s)	783
CfoI	GCGC	1 cut(s)	457
CseI	GACGC	2 cut(s)	174, 739
Csp6I	GTAC	5 cut(s)	30, 247, 274, 446, 1123
CviAII	CATG	7 cut(s)	378, 420, 691, 706, 784, 846, 1052
CviQI	GTAC	5 cut(s)	30, 247, 274, 446, 1123
DdeI	CTNAG	3 cut(s)	289, 482, 625
DpnI	GATC	4 cut(s)	623, 843, 1091, 1227
DpnII	GATC	4 cut(s)	621, 841, 1089, 1225
Eam1104I	CTCTTC	2 cut(s)	233, 1158
EarI	CTCTTC	2 cut(s)	233, 1158
EciI	GGCGGA	1 cut(s)	939
Eco130I	CCWWGG	1 cut(s)	845
Eco31I	GGTCTC	1 cut(s)	98
Eco32I	GATATC	1 cut(s)	199
Eco47III	AGCGCT	1 cut(s)	456
Eco57I	CTGAAG	1 cut(s)	559
EcoRV	GATATC	1 cut(s)	199
EcoT14I	CCWWGG	1 cut(s)	845
ErhI	CCWWGG	1 cut(s)	845
FaeI	CATG	7 cut(s)	381, 423, 694, 709, 787, 849, 1055
FaqI	GGGAC	1 cut(s)	1224
FatI	CATG	7 cut(s)	377, 419, 690, 705, 783, 845, 1051
FauI	CCCGC	1 cut(s)	994
FbaI	TGATCA	2 cut(s)	1089, 1225
Fnu4HI	GCNGC	3 cut(s)	17, 540, 699
FokI	GGATG	1 cut(s)	1235
Fsp4HI	GCNGC	3 cut(s)	17, 540, 699
FspBI	CTAG	1 cut(s)	978
GlaI	GCGC	1 cut(s)	456
GluI	GCNGC	3 cut(s)	17, 540, 699
GsuI	CTGGAG	2 cut(s)	112, 602
HaeII	RGCGCY	1 cut(s)	458
HapII	CCGG	2 cut(s)	108, 156
HgaI	GACGC	2 cut(s)	174, 739
HhaI	GCGC	1 cut(s)	457
Hin1II	CATG	7 cut(s)	381, 423, 694, 709, 787, 849, 1055
Hin6I	GCGC	1 cut(s)	455
HinP1I	GCGC	1 cut(s)	455
HincII	GTYRAC	1 cut(s)	642
HindII	GTYRAC	1 cut(s)	642
HinfI	GANTC	4 cut(s)	268, 491, 584, 1207
HpaI	GTTAAC	1 cut(s)	642
HpaII	CCGG	2 cut(s)	108, 156
HphI	GGTGA	2 cut(s)	170, 1015
Hpy166II	GTNNAC	2 cut(s)	249, 642
Hpy188I	TCNGA	3 cut(s)	267, 1086, 1191
Hpy188III	TCNNGA	5 cut(s)	129, 784, 839, 1211, 1229
Hpy8I	GTNNAC	2 cut(s)	249, 642
HpyAV	CCTTC	3 cut(s)	106, 583, 845
HpyCH4III	ACNGT	3 cut(s)	152, 646, 991
HpyCH4IV	ACGT	2 cut(s)	213, 1064
HpyCH4V	TGCA	7 cut(s)	16, 521, 531, 539, 650, 745, 1037
HpyF10VI	GCNNNNNNNGC	2 cut(s)	13, 893
HpyF3I	CTNAG	3 cut(s)	289, 482, 625
HpySE526I	ACGT	2 cut(s)	213, 1064
Hsp92II	CATG	7 cut(s)	381, 423, 694, 709, 787, 849, 1055
HspAI	GCGC	1 cut(s)	455
Ksp22I	TGATCA	2 cut(s)	1089, 1225
KspAI	GTTAAC	1 cut(s)	642
Kzo9I	GATC	4 cut(s)	621, 841, 1089, 1225
LmnI	GCTCC	7 cut(s)	4, 24, 131, 322, 884, 926, 1186
Lsp1109I	GCAGC	3 cut(s)	28, 551, 685
LweI	GCATC	1 cut(s)	903
MaeI	CTAG	1 cut(s)	978
MaeII	ACGT	2 cut(s)	213, 1064
MalI	GATC	4 cut(s)	623, 843, 1091, 1227
MboI	GATC	4 cut(s)	621, 841, 1089, 1225
MboII	GAAGA	6 cut(s)	220, 493, 545, 548, 815, 1175
MflI	RGATCY	1 cut(s)	841
MhlI	GDGCHC	3 cut(s)	889, 931, 1152
MluCI	AATT	4 cut(s)	308, 662, 854, 1058
MlyI	GAGTC	3 cut(s)	262, 500, 593
MnlI	CCTC	3 cut(s)	46, 1009, 1153
MseI	TTAA	3 cut(s)	219, 326, 641
MslI	CAYNNNNRTG	2 cut(s)	782, 1028
MspA1I	CMGCKG	1 cut(s)	720
MspI	CCGG	2 cut(s)	108, 156
MspR9I	CCNGG	1 cut(s)	109
MwoI	GCNNNNNNNGC	2 cut(s)	13, 893
NciI	CCSGG	1 cut(s)	109
NcoI	CCATGG	1 cut(s)	845
NdeII	GATC	4 cut(s)	621, 841, 1089, 1225
NlaIII	CATG	7 cut(s)	381, 423, 694, 709, 787, 849, 1055
NlaIV	GGNNCC	3 cut(s)	127, 798, 843
NmuCI	GTSAC	3 cut(s)	492, 991, 1021
OliI	CACNNNNGTG	1 cut(s)	1028
PagI	TCATGA	1 cut(s)	783
PfeI	GAWTC	1 cut(s)	1207
PflMI	CCANNNNNTGG	1 cut(s)	420
PkrI	GCNGC	3 cut(s)	18, 541, 700
PleI	GAGTC	3 cut(s)	262, 499, 592
PpsI	GAGTC	3 cut(s)	262, 499, 592
Ppu21I	YACGTR	1 cut(s)	1065
PshBI	ATTAAT	1 cut(s)	326
PspN4I	GGNNCC	3 cut(s)	127, 798, 843
PstI	CTGCAG	1 cut(s)	541
PsuI	RGATCY	1 cut(s)	841
RsaI	GTAC	5 cut(s)	31, 248, 275, 447, 1124
RsaNI	GTAC	5 cut(s)	30, 247, 274, 446, 1123
RseI	CAYNNNNRTG	2 cut(s)	782, 1028
SaqAI	TTAA	3 cut(s)	219, 326, 641
SatI	GCNGC	3 cut(s)	17, 540, 699
Sau3AI	GATC	4 cut(s)	621, 841, 1089, 1225
SchI	GAGTC	3 cut(s)	262, 500, 593
ScrFI	CCNGG	1 cut(s)	109
SduI	GDGCHC	3 cut(s)	889, 931, 1152
SetI	ASST	9 cut(s)	21, 78, 216, 358, 483, 791, 1067, 1078, 1183
SfaNI	GCATC	1 cut(s)	903
SfcI	CTRYAG	2 cut(s)	537, 810
SmiMI	CAYNNNNRTG	2 cut(s)	782, 1028
SpeI	ACTAGT	1 cut(s)	977
Sse9I	AATT	4 cut(s)	308, 662, 854, 1058
SsiI	CCGC	3 cut(s)	718, 924, 1001
SspI	AATATT	1 cut(s)	549
SspMI	CTAG	1 cut(s)	978
StyD4I	CCNGG	1 cut(s)	107
StyI	CCWWGG	1 cut(s)	845
TaaI	ACNGT	3 cut(s)	152, 646, 991
TaiI	ACGT	2 cut(s)	216, 1067
TaqI	TCGA	1 cut(s)	898
TasI	AATT	4 cut(s)	308, 662, 854, 1058
TatI	WGTACW	1 cut(s)	273
TfiI	GAWTC	1 cut(s)	1207
Tru1I	TTAA	3 cut(s)	219, 326, 641
Tru9I	TTAA	3 cut(s)	219, 326, 641
TscAI	CASTG	4 cut(s)	624, 807, 936, 1044
TseFI	GTSAC	3 cut(s)	492, 991, 1021
TseI	GCWGC	3 cut(s)	16, 539, 698
Tsp45I	GTSAC	3 cut(s)	492, 991, 1021
TspDTI	ATGAA	4 cut(s)	344, 493, 766, 772
TspGWI	ACGGA	2 cut(s)	11, 961
TspRI	CASTG	4 cut(s)	624, 807, 936, 1044
Van91I	CCANNNNNTGG	1 cut(s)	420
VspI	ATTAAT	1 cut(s)	326
XapI	RAATTY	4 cut(s)	308, 662, 854, 1058
XspI	CTAG	1 cut(s)	978

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.