FvH4_6g27881

sugar phosphate phosphate translocator

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
Physical Location & Seq
Reverse (-)
21450567 .. 21456088
5522 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g27881.t1

Sequence Viewer

Length: 723 bp
ATGTGTAAATCTGCTGCTCCTATATTTCTCCTTCTATTTGCCTTCGCTTTCAGGTTGGAGTCTCCAAGCTATAAACTTTCGGGAATCATATTGGTTATATCCATTGGAATACTATTAACAGTTGCGAAGGAGACTGAATTTGATTTCTGGGGTTTCATTTTTGTCATGCTTGCTGCTGTTATGTCCGGTTTCCGATGGTGTATGACTCAAATTCTTCTTCAGAAAGAATCATATGGTTTGAAAAATCCACTTACTTTGATGAGCTATGTGACTCCGGTTATGGCAGTGGTGACTGCGCTGCTCTCTTTTATTTTTGATCCATGGGATGAACTTAGAAGAAACAATTACTTCAATAATCCAGAGCATATCAGTCGAAGTTGCTTGCTAATGCTTTTTGGTGGAACCCTCGCCTTTTTCATGGTATTAACAGAATTCATCCTTGTCTCGGTGACCAGTGCTGTCACCGTCACAATAGCAGGTGTTGTCAAGGAGGCTCTAACTATATTGGTTGCAGTCATTTACTTCCATGATGAATTTACTACGTTAAAAGGAGTTGGACTCTTCACAATTATGCTTGGTGTCAGCTTATTCAACTGGTACAAGTATGAAAAACTAAAGAAGGGTCAGACAAGTGATGATGACATTGATGAATCAGTAATGATGAATAATGCTGCAAAATATGTTATTCTTGAAGAGACAGATGAGCAAGATGATGGCACATAA

Protein Analysis

241

Amino Acids

27.04

Weight (kDa)

4.79

Isoelectric Point (pI)

38.65

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TPT PF03151 2 - 198 4.1e-15 Triose-phosphate Transporter family
UAA PF08449 43 - 198 4.1e-07 UAA transporter family
PUNUT PF16913 43 - 206 5.1e-07 Purine nucleobase transmembrane transport
EamA PF00892 50 - 198 9.1e-07 EamA-like transporter family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 467
Acc36I ACCTGC 1 cut(s) 467
AclWI GGATC 1 cut(s) 311
AcsI RAATTY 4 cut(s) 137, 210, 431, 533
AcuI CTGAAG 1 cut(s) 203
AfaI GTAC 1 cut(s) 599
AfiI CCNNNNNNNGG 1 cut(s) 445
AgsI TTSAA 4 cut(s) 241, 352, 592, 692
AluBI AGCT 3 cut(s) 69, 264, 585
AluI AGCT 3 cut(s) 69, 264, 585
Alw26I GTCTC 4 cut(s) 66, 125, 448, 689
AlwI GGATC 1 cut(s) 311
ApeKI GCWGC 4 cut(s) 14, 173, 298, 671
ApoI RAATTY 4 cut(s) 137, 210, 431, 533
AspLEI GCGC 1 cut(s) 298
AsuHPI GGTGA 3 cut(s) 301, 454, 460
BbvI GCAGC 3 cut(s) 160, 285, 658
BccI CCATC 2 cut(s) 189, 707
BcgI CGANNNNNNTGC 2 cut(s) 353, 387
BcoDI GTCTC 4 cut(s) 66, 125, 448, 689
BfuAI ACCTGC 1 cut(s) 467
BisI GCNGC 4 cut(s) 15, 174, 299, 672
BlsI GCNGC 4 cut(s) 16, 175, 300, 673
BmiI GGNNCC 1 cut(s) 403
BplI GAGNNNNNCTC 2 cut(s) 543, 575
BsaJI CCNNGG 1 cut(s) 320
BsaWI WCCGGW 2 cut(s) 185, 274
Bsc4I CCNNNNNNNGG 1 cut(s) 445
Bse1I ACTGG 2 cut(s) 453, 599
BseDI CCNNGG 1 cut(s) 320
BseGI GGATG 2 cut(s) 331, 435
BseLI CCNNNNNNNGG 1 cut(s) 445
BseNI ACTGG 2 cut(s) 453, 599
BseXI GCAGC 3 cut(s) 160, 285, 658
BsiSI CCGG 2 cut(s) 186, 275
BslI CCNNNNNNNGG 1 cut(s) 445
BsmAI GTCTC 4 cut(s) 66, 125, 448, 689
Bsp143I GATC 1 cut(s) 316
Bsp19I CCATGG 1 cut(s) 320
BspLI GGNNCC 1 cut(s) 403
BspMI ACCTGC 1 cut(s) 467
BspPI GGATC 1 cut(s) 311
BsrI ACTGG 2 cut(s) 453, 599
BssECI CCNNGG 1 cut(s) 320
BssMI GATC 1 cut(s) 316
BssT1I CCWWGG 1 cut(s) 320
Bst4CI ACNGT 2 cut(s) 121, 466
Bst6I CTCTTC 2 cut(s) 566, 687
BstC8I GCNNGC 2 cut(s) 171, 383
BstDEI CTNAG 1 cut(s) 332
BstDSI CCRYGG 1 cut(s) 320
BstEII GGTNACC 1 cut(s) 448
BstF5I GGATG 2 cut(s) 331, 435
BstHHI GCGC 1 cut(s) 298
BstKTI GATC 1 cut(s) 319
BstMAI GTCTC 4 cut(s) 66, 125, 448, 689
BstMBI GATC 1 cut(s) 316
BstPI GGTNACC 1 cut(s) 448
BstV1I GCAGC 3 cut(s) 160, 285, 658
BtgI CCRYGG 1 cut(s) 320
BtsCI GGATG 2 cut(s) 331, 435
BtsI GCAGTG 1 cut(s) 291
BtsIMutI CAGTG 2 cut(s) 291, 460
BveI ACCTGC 1 cut(s) 467
Cac8I GCNNGC 2 cut(s) 171, 383
CfoI GCGC 1 cut(s) 298
Csp6I GTAC 1 cut(s) 598
CspCI CAANNNNNGTGG 2 cut(s) 237, 272
CviAII CATG 4 cut(s) 166, 321, 418, 527
CviJI RGCY 4 cut(s) 69, 264, 494, 585
CviKI_1 RGCY 4 cut(s) 69, 264, 494, 585
CviQI GTAC 1 cut(s) 598
DdeI CTNAG 1 cut(s) 332
DpnI GATC 1 cut(s) 318
DpnII GATC 1 cut(s) 316
Eam1104I CTCTTC 2 cut(s) 566, 687
EarI CTCTTC 2 cut(s) 566, 687
Eco130I CCWWGG 1 cut(s) 320
Eco57I CTGAAG 1 cut(s) 203
Eco91I GGTNACC 1 cut(s) 448
EcoO65I GGTNACC 1 cut(s) 448
EcoRI GAATTC 1 cut(s) 431
EcoT14I CCWWGG 1 cut(s) 320
ErhI CCWWGG 1 cut(s) 320
FaeI CATG 4 cut(s) 169, 324, 421, 530
FatI CATG 4 cut(s) 165, 320, 417, 526
FauNDI CATATG 1 cut(s) 232
Fnu4HI GCNGC 4 cut(s) 15, 174, 299, 672
FokI GGATG 2 cut(s) 338, 422
Fsp4HI GCNGC 4 cut(s) 15, 174, 299, 672
GlaI GCGC 1 cut(s) 297
GluI GCNGC 4 cut(s) 15, 174, 299, 672
HapII CCGG 2 cut(s) 186, 275
HhaI GCGC 1 cut(s) 298
Hin1II CATG 4 cut(s) 169, 324, 421, 530
Hin6I GCGC 1 cut(s) 296
HinP1I GCGC 1 cut(s) 296
HinfI GANTC 7 cut(s) 59, 84, 205, 227, 271, 558, 650
HpaII CCGG 2 cut(s) 186, 275
HphI GGTGA 3 cut(s) 301, 454, 460
Hpy188I TCNGA 3 cut(s) 194, 222, 627
Hpy188III TCNNGA 3 cut(s) 81, 359, 689
HpyAV CCTTC 4 cut(s) 41, 52, 121, 613
HpyCH4III ACNGT 2 cut(s) 121, 466
HpyCH4IV ACGT 1 cut(s) 542
HpyCH4V TGCA 2 cut(s) 512, 674
HpyF3I CTNAG 1 cut(s) 332
HpySE526I ACGT 1 cut(s) 542
Hsp92II CATG 4 cut(s) 169, 324, 421, 530
HspAI GCGC 1 cut(s) 296
Kzo9I GATC 1 cut(s) 316
LmnI GCTCC 1 cut(s) 22
LpnPI CCDG 8 cut(s) 37, 133, 199, 288, 372, 462, 466, 580
Lsp1109I GCAGC 3 cut(s) 160, 285, 658
MaeII ACGT 1 cut(s) 542
MaeIII GTNAC 5 cut(s) 268, 289, 448, 460, 466
MalI GATC 1 cut(s) 318
MboI GATC 1 cut(s) 316
MboII GAAGA 5 cut(s) 206, 209, 348, 553, 704
MluCI AATT 6 cut(s) 137, 210, 343, 431, 533, 567
MlyI GAGTC 4 cut(s) 68, 199, 265, 552
MmeI TCCRAC 2 cut(s) 36, 535
MnlI CCTC 2 cut(s) 416, 484
MseI TTAA 3 cut(s) 116, 425, 545
MslI CAYNNNNRTG 1 cut(s) 569
MspI CCGG 2 cut(s) 186, 275
NcoI CCATGG 1 cut(s) 320
NdeI CATATG 1 cut(s) 232
NdeII GATC 1 cut(s) 316
NlaIII CATG 4 cut(s) 169, 324, 421, 530
NlaIV GGNNCC 1 cut(s) 403
NmuCI GTSAC 5 cut(s) 268, 289, 448, 460, 466
PaqCI CACCTGC 1 cut(s) 467
PfeI GAWTC 3 cut(s) 84, 227, 650
PkrI GCNGC 4 cut(s) 16, 175, 300, 673
PleI GAGTC 4 cut(s) 67, 199, 265, 552
PpsI GAGTC 4 cut(s) 67, 199, 265, 552
PspEI GGTNACC 1 cut(s) 448
PspN4I GGNNCC 1 cut(s) 403
RsaI GTAC 1 cut(s) 599
RsaNI GTAC 1 cut(s) 598
RseI CAYNNNNRTG 1 cut(s) 569
SaqAI TTAA 3 cut(s) 116, 425, 545
SatI GCNGC 4 cut(s) 15, 174, 299, 672
Sau3AI GATC 1 cut(s) 316
SchI GAGTC 4 cut(s) 68, 199, 265, 552
SetI ASST 6 cut(s) 56, 71, 266, 481, 545, 587
SmiMI CAYNNNNRTG 1 cut(s) 569
Sse9I AATT 6 cut(s) 137, 210, 343, 431, 533, 567
StyI CCWWGG 1 cut(s) 320
TaaI ACNGT 2 cut(s) 121, 466
TaiI ACGT 1 cut(s) 545
TaqI TCGA 1 cut(s) 373
TasI AATT 6 cut(s) 137, 210, 343, 431, 533, 567
TfiI GAWTC 3 cut(s) 84, 227, 650
Tru1I TTAA 3 cut(s) 116, 425, 545
Tru9I TTAA 3 cut(s) 116, 425, 545
TscAI CASTG 2 cut(s) 291, 460
TseFI GTSAC 5 cut(s) 268, 289, 448, 460, 466
TseI GCWGC 4 cut(s) 14, 173, 298, 671
Tsp45I GTSAC 5 cut(s) 268, 289, 448, 460, 466
TspDTI ATGAA 8 cut(s) 145, 342, 406, 424, 546, 621, 663, 677
TspRI CASTG 2 cut(s) 291, 460
XapI RAATTY 4 cut(s) 137, 210, 431, 533
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.