Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp03

Orthogroup ID

OG0006204

Physical Location & Seq

Genomic Coordinates Forward (+)

8757855 .. 8766881

Gene Structure 9027 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.3G108900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1497 bp

ATGGTAGAGAGTGATTTGGATACAGAAAAGGTTGAGTACACGGAAGCCAACTACGCTCAGAGTGGAAGCCAAGAATCAGGTCTTCACAGGGAGCCCTCATTCTCTCGCTGGTGCGATGAAGATCGGACAGTGCATTTTGATCGTCAATTAGAAAACACGGATGCTAGTGTAGAAGAAGACTCTGACTTTGAATTGCCCATGCTTCAAAGGGGTGAGCTAGAAAACAACATTTTGGATAGGGACAGAAACCATAATACTAAATCTCAGAAGAGAAATATGCGGTTGAACGGTGGTGATACCTTGGATGATGATTCTACTCACGTAGGTGGGACTGGAAATGAGGAGTATTTGCCCTTTGATATCGAGAATAGCTCTGAAGGGGAGGTACATGCTATAGATAGTTCTATGCATAACCATAAAGCATTACCACCCAATTCGAAGAACCCTATTTCTGTTTCCAATGTGCTGAAAATGTTGTTCTTCGTACTAATGTGGTACACTTTCAGCCTGTTTTTGACTTTGTATAACAAAAGTCTGTTAGGAGATGATTTGGGGAAGTTCCCTGCTCCATTATTGATGAATACTGTTCATTTCTCAATGCAAGCTGTCTTTTCGAAGGGAATCACATGGTATTGGTCTAATAGATTCCAAACTGGTGGTTCTATGTCATGGAGAGATTACTTTGTGAAAGTTGTACCCACGGCTCTTGGAACAGCAATGGATGTTAATCTAAGCAACGCATCCCTTGTTTTTATATCTGTCACATTTGCCACAATGTGTAAATCAGCGGCTCCTATATTTCTTCTTCTATTTGCTTTTGCTTTCAGATTGGAGGCACCAAGTGTTAGACTTTCGGGGATCATATTAATTATCTCCATCGGAATACTATTAACAGTTGCAAAGGAGACTGAATTTGACTTTTGGGGATTCATTTTTGTCATGCTTGCTGCTGTTATGTCCGGCTTCCGCTGGTGCATGACTCAAATTCTTTTGCAGAAAGAAGATTATGGTTTAAAAAATCCGCTTACTTTGATGAGCTATGTGACCCCAGTGATGGCAGTAGTGACTGCCCTTCTCTCCCTTGTTTTTGATCCGTGGGATGAACTTAGGAGAAACAATTACTTCAATAATCCAGCGCATATCAGTCGAAGTTGCTTGCTGATGCTGTTTGGTGGAACCCTTGCCTTTTTTATGGTATTAACAGAATTCATTCTTGTCTCAGTAACCAGTGCTGTCACAGTAACAATAGCAGGTGTTGTTAAGGAGGCTCTCACTATATTGGTTGCAGTTATTTACTTCCATGATGAATTTACCCGGTTGAAAGGAGCTGGGCTCTTCATAATTATGCTTGGTGTCAGTTTATTCAACTGGTACAAATACGAAAAGATAAAGAAGGGTCAAACAAGTGAAGATGACATGGAGGAATCAGTCACGACAAATATTGCTGCAAAATATGTTATTCTTGAGGAGACGGATGAGCAAGATGATGGCAGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005793 GO:0006810 GO:0006811 GO:0006820 GO:0008150 GO:0015711 GO:0015780 GO:0015786 GO:0015931 GO:0034220 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0051179 GO:0051234 GO:0055085 GO:0071702 GO:0071705 GO:0090481 GO:0098656 GO:1901264

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TPT

Protein Analysis

499

Amino Acids

56.27

Weight (kDa)

4.84

Isoelectric Point (pI)

43.79

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006204)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G06470 AT1G06470 AT1G06470 AT1G06470
fragaria_vesca	FvH4_6g27881 FvH4_6g27890
malus_domestica	MD09G1233800.v1.1 MD17G1230200.v1.1
prunus_persica	Prupe.3G108900_v2.0.a1 Prupe.3G108900_v2.0.a1
pyrus_communis	pycom09g15210 pycom09g15220 pycom17g23310
rosa_chinensis	RchiOBHm_Chr2g0131361
rosa_laevigata	RLG00000019180
rosa_multiflora	Rmu_ssc0000019.1_g000035
rosa_roxburghii	Rroxscaffold_2G00113060 Rroxscaffold_4G00296720 Rroxscaffold_4G00296730 Rroxscaffold_4G00296740
rosa_rugosa	Rorug02G0296000 Rorug02G0296100
rosa_samantha	Rh2AG349300 Rh2BG356300 Rh2CG335200 Rh2DG374200
rosa_wichuraiana	Rw2G028350

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	1241
Acc36I	ACCTGC	1 cut(s)	1241
AccB1I	GGYRCC	1 cut(s)	835
AciI	CCGC	4 cut(s)	280, 788, 967, 1022
AclWI	GGATC	2 cut(s)	866, 1085
AcsI	RAATTY	4 cut(s)	911, 984, 1205, 1307
AcuI	CTGAAG	1 cut(s)	396
AdeI	CACNNNGTG	2 cut(s)	777, 842
AfaI	GTAC	6 cut(s)	38, 387, 486, 497, 696, 1373
AfiI	CCNNNNNNNGG	1 cut(s)	1054
AgsI	TTSAA	6 cut(s)	191, 206, 286, 1126, 1321, 1366
AleI	CACNNNNGTG	1 cut(s)	324
AluBI	AGCT	5 cut(s)	217, 372, 605, 1038, 1328
AluI	AGCT	5 cut(s)	217, 372, 605, 1038, 1328
Alw26I	GTCTC	3 cut(s)	899, 1222, 1463
AlwI	GGATC	2 cut(s)	866, 1085
ApeKI	GCWGC	2 cut(s)	947, 1445
ApoI	RAATTY	4 cut(s)	911, 984, 1205, 1307
ArsI	GACNNNNNNTTYG	2 cut(s)	170, 202
AseI	ATTAAT	1 cut(s)	866
Asp700I	GAANNNNTTC	1 cut(s)	1209
AspLEI	GCGC	1 cut(s)	1138
AsuC2I	CCSGG	1 cut(s)	1315
AsuHPI	GGTGA	2 cut(s)	224, 305
AsuII	TTCGAA	2 cut(s)	437, 614
BanI	GGYRCC	1 cut(s)	835
BanII	GRGCYC	2 cut(s)	96, 1335
BarI	GAAGNNNNNNTAC	2 cut(s)	369, 401
BbsI	GAAGAC	2 cut(s)	74, 183
BbvI	GCAGC	2 cut(s)	934, 1432
BccI	CCATC	3 cut(s)	884, 1048, 1481
BceAI	ACGGC	1 cut(s)	717
BcgI	CGANNNNNNTGC	4 cut(s)	122, 156, 1127, 1161
BciVI	GTATCC	1 cut(s)	13
BcnI	CCSGG	1 cut(s)	1315
BcoDI	GTCTC	3 cut(s)	899, 1222, 1463
BfaI	CTAG	2 cut(s)	165, 218
BfmI	CTRYAG	1 cut(s)	393
BfuAI	ACCTGC	1 cut(s)	1241
BfuI	GTATCC	1 cut(s)	13
BisI	GCNGC	3 cut(s)	789, 948, 1446
BlsI	GCNGC	3 cut(s)	790, 949, 1447
Bme1390I	CCNGG	1 cut(s)	1315
BmiI	GGNNCC	4 cut(s)	93, 792, 837, 1177
BmrFI	CCNGG	1 cut(s)	1315
BmrI	ACTGGG	1 cut(s)	1043
BmsI	GCATC	3 cut(s)	151, 749, 1152
BmuI	ACTGGG	1 cut(s)	1043
BpiI	GAAGAC	2 cut(s)	74, 183
BplI	GAGNNNNNCTC	4 cut(s)	356, 388, 1317, 1349
Bpu14I	TTCGAA	2 cut(s)	437, 614
BpuEI	CTTGAG	1 cut(s)	1484
BpuMI	CCSGG	1 cut(s)	1315
BsaAI	YACGTR	1 cut(s)	322
BsaBI	GATNNNNATC	2 cut(s)	120, 726
BsaJI	CCNNGG	3 cut(s)	300, 699, 1094
Bsc4I	CCNNNNNNNGG	1 cut(s)	1054
Bse1I	ACTGG	5 cut(s)	337, 658, 1049, 1227, 1373
Bse3DI	GCAATG	1 cut(s)	723
Bse8I	GATNNNNATC	2 cut(s)	120, 726
BseDI	CCNNGG	3 cut(s)	300, 699, 1094
BseGI	GGATG	6 cut(s)	166, 310, 727, 740, 1105, 1480
BseJI	GATNNNNATC	2 cut(s)	120, 726
BseLI	CCNNNNNNNGG	1 cut(s)	1054
BseMI	GCAATG	1 cut(s)	723
BseMII	CTCAG	3 cut(s)	71, 278, 1233
BseNI	ACTGG	5 cut(s)	337, 658, 1049, 1227, 1373
BseRI	GAGGAG	2 cut(s)	356, 1481
BseXI	GCAGC	2 cut(s)	934, 1432
BseYI	CCCAGC	1 cut(s)	1328
BshNI	GGYRCC	1 cut(s)	835
BsiSI	CCGG	2 cut(s)	960, 1315
BslFI	GGGAC	2 cut(s)	254, 343
BslI	CCNNNNNNNGG	1 cut(s)	1054
BsmAI	GTCTC	3 cut(s)	899, 1222, 1463
BsmBI	CGTCTC	1 cut(s)	1463
BsmFI	GGGAC	2 cut(s)	254, 343
Bsp119I	TTCGAA	2 cut(s)	437, 614
Bsp1286I	GDGCHC	2 cut(s)	96, 1335
Bsp143I	GATC	4 cut(s)	121, 139, 858, 1090
BspACI	CCGC	4 cut(s)	280, 788, 967, 1022
BspCNI	CTCAG	3 cut(s)	70, 277, 1232
BspLI	GGNNCC	4 cut(s)	93, 792, 837, 1177
BspMI	ACCTGC	1 cut(s)	1241
BspPI	GGATC	2 cut(s)	866, 1085
BspQI	GCTCTTC	1 cut(s)	1340
BspT104I	TTCGAA	2 cut(s)	437, 614
BspT107I	GGYRCC	1 cut(s)	835
BsrDI	GCAATG	1 cut(s)	723
BsrI	ACTGG	5 cut(s)	337, 658, 1049, 1227, 1373
BssECI	CCNNGG	3 cut(s)	300, 699, 1094
BssMI	GATC	4 cut(s)	121, 139, 858, 1090
BssT1I	CCWWGG	1 cut(s)	300
Bst4CI	ACNGT	5 cut(s)	130, 290, 586, 895, 1240
Bst6I	CTCTTC	2 cut(s)	263, 1340
BstBAI	YACGTR	1 cut(s)	322
BstBI	TTCGAA	2 cut(s)	437, 614
BstC8I	GCNNGC	3 cut(s)	603, 945, 1157
BstDEI	CTNAG	5 cut(s)	57, 264, 731, 1106, 1219
BstDSI	CCRYGG	2 cut(s)	699, 1094
BstF5I	GGATG	6 cut(s)	166, 310, 727, 740, 1105, 1480
BstHHI	GCGC	1 cut(s)	1138
BstKTI	GATC	4 cut(s)	124, 142, 861, 1093
BstMAI	GTCTC	3 cut(s)	899, 1222, 1463
BstMBI	GATC	4 cut(s)	121, 139, 858, 1090
BstMWI	GCNNNNNNNGC	1 cut(s)	53
BstNSI	RCATGY	1 cut(s)	392
BstSCI	CCNGG	1 cut(s)	1313
BstSFI	CTRYAG	1 cut(s)	393
BstV1I	GCAGC	2 cut(s)	934, 1432
BstV2I	GAAGAC	2 cut(s)	74, 183
BstXI	CCANNNNNNTGG	1 cut(s)	656
BsuI	GTATCC	1 cut(s)	13
BtgI	CCRYGG	2 cut(s)	699, 1094
BtgZI	GCGATG	1 cut(s)	129
BtsCI	GGATG	6 cut(s)	166, 310, 727, 740, 1105, 1480
BtsIMutI	CAGTG	3 cut(s)	135, 1056, 1234
BveI	ACCTGC	1 cut(s)	1241
Cac8I	GCNNGC	3 cut(s)	603, 945, 1157
CfoI	GCGC	1 cut(s)	1138
Csp6I	GTAC	6 cut(s)	37, 386, 485, 496, 695, 1372
CspCI	CAANNNNNGTGG	2 cut(s)	688, 723
CviAII	CATG	8 cut(s)	199, 389, 627, 669, 940, 976, 1301, 1417
CviQI	GTAC	6 cut(s)	37, 386, 485, 496, 695, 1372
DdeI	CTNAG	5 cut(s)	57, 264, 731, 1106, 1219
DpnI	GATC	4 cut(s)	123, 141, 860, 1092
DpnII	GATC	4 cut(s)	121, 139, 858, 1090
DraI	TTTAAA	1 cut(s)	1014
DraIII	CACNNNGTG	2 cut(s)	777, 842
Eam1104I	CTCTTC	2 cut(s)	263, 1340
EarI	CTCTTC	2 cut(s)	263, 1340
Eco130I	CCWWGG	1 cut(s)	300
Eco24I	GRGCYC	2 cut(s)	96, 1335
Eco32I	GATATC	1 cut(s)	361
Eco57I	CTGAAG	1 cut(s)	396
EcoRI	GAATTC	1 cut(s)	1205
EcoRV	GATATC	1 cut(s)	361
EcoT14I	CCWWGG	1 cut(s)	300
EcoT22I	ATGCAT	1 cut(s)	411
EcoT38I	GRGCYC	2 cut(s)	96, 1335
ErhI	CCWWGG	1 cut(s)	300
Esp3I	CGTCTC	1 cut(s)	1463
FaeI	CATG	8 cut(s)	202, 392, 630, 672, 943, 979, 1304, 1420
FaqI	GGGAC	2 cut(s)	254, 343
FatI	CATG	8 cut(s)	198, 388, 626, 668, 939, 975, 1300, 1416
Fnu4HI	GCNGC	3 cut(s)	789, 948, 1446
FokI	GGATG	6 cut(s)	173, 317, 727, 734, 1112, 1487
FriOI	GRGCYC	2 cut(s)	96, 1335
Fsp4HI	GCNGC	3 cut(s)	789, 948, 1446
FspBI	CTAG	2 cut(s)	165, 218
GlaI	GCGC	1 cut(s)	1137
GluI	GCNGC	3 cut(s)	789, 948, 1446
GsaI	CCCAGC	1 cut(s)	1332
HapII	CCGG	2 cut(s)	960, 1315
HhaI	GCGC	1 cut(s)	1138
Hin1II	CATG	8 cut(s)	202, 392, 630, 672, 943, 979, 1304, 1420
Hin6I	GCGC	1 cut(s)	1136
HinP1I	GCGC	1 cut(s)	1136
HinfI	GANTC	8 cut(s)	74, 179, 311, 621, 645, 927, 979, 1424
HpaII	CCGG	2 cut(s)	960, 1315
HphI	GGTGA	2 cut(s)	224, 305
Hpy166II	GTNNAC	2 cut(s)	39, 498
Hpy188I	TCNGA	7 cut(s)	60, 126, 184, 267, 376, 827, 881
Hpy188III	TCNNGA	3 cut(s)	364, 1432, 1463
Hpy8I	GTNNAC	2 cut(s)	39, 498
HpyAV	CCTTC	4 cut(s)	371, 610, 1082, 1387
HpyCH4III	ACNGT	5 cut(s)	130, 290, 586, 895, 1240
HpyCH4IV	ACGT	1 cut(s)	321
HpyCH4V	TGCA	8 cut(s)	133, 409, 601, 899, 975, 994, 1286, 1448
HpyF10VI	GCNNNNNNNGC	1 cut(s)	53
HpyF3I	CTNAG	5 cut(s)	57, 264, 731, 1106, 1219
HpySE526I	ACGT	1 cut(s)	321
Hsp92II	CATG	8 cut(s)	202, 392, 630, 672, 943, 979, 1304, 1420
HspAI	GCGC	1 cut(s)	1136
Kzo9I	GATC	4 cut(s)	121, 139, 858, 1090
LguI	GCTCTTC	1 cut(s)	1340
LmnI	GCTCC	4 cut(s)	91, 571, 796, 1325
Lsp1109I	GCAGC	2 cut(s)	934, 1432
LweI	GCATC	3 cut(s)	151, 749, 1152
MaeI	CTAG	2 cut(s)	165, 218
MaeII	ACGT	1 cut(s)	321
MaeIII	GTNAC	7 cut(s)	760, 1042, 1063, 1222, 1234, 1240, 1429
MalI	GATC	4 cut(s)	123, 141, 860, 1092
MboI	GATC	4 cut(s)	121, 139, 858, 1090
MhlI	GDGCHC	2 cut(s)	96, 1335
MlyI	GAGTC	2 cut(s)	173, 973
MnlI	CCTC	7 cut(s)	106, 334, 376, 826, 1258, 1414, 1459
Mph1103I	ATGCAT	1 cut(s)	411
MroXI	GAANNNNTTC	1 cut(s)	1209
MseI	TTAA	6 cut(s)	726, 866, 890, 1013, 1199, 1260
MslI	CAYNNNNRTG	2 cut(s)	324, 1343
MspA1I	CMGCKG	2 cut(s)	788, 969
MspI	CCGG	2 cut(s)	960, 1315
MspR9I	CCNGG	1 cut(s)	1315
MwoI	GCNNNNNNNGC	1 cut(s)	53
NciI	CCSGG	1 cut(s)	1315
NdeII	GATC	4 cut(s)	121, 139, 858, 1090
NlaIII	CATG	8 cut(s)	202, 392, 630, 672, 943, 979, 1304, 1420
NlaIV	GGNNCC	4 cut(s)	93, 792, 837, 1177
NmuCI	GTSAC	5 cut(s)	760, 1042, 1063, 1234, 1429
NsiI	ATGCAT	1 cut(s)	411
NspI	RCATGY	1 cut(s)	392
NspV	TTCGAA	2 cut(s)	437, 614
OliI	CACNNNNGTG	1 cut(s)	324
PaqCI	CACCTGC	1 cut(s)	1241
PciSI	GCTCTTC	1 cut(s)	1340
PdmI	GAANNNNTTC	1 cut(s)	1209
PfeI	GAWTC	6 cut(s)	74, 311, 621, 645, 927, 1424
PkrI	GCNGC	3 cut(s)	790, 949, 1447
PleI	GAGTC	2 cut(s)	173, 973
PpsI	GAGTC	2 cut(s)	173, 973
Ppu21I	YACGTR	1 cut(s)	322
PshBI	ATTAAT	1 cut(s)	866
PspFI	CCCAGC	1 cut(s)	1328
PspN4I	GGNNCC	4 cut(s)	93, 792, 837, 1177
RsaI	GTAC	6 cut(s)	38, 387, 486, 497, 696, 1373
RsaNI	GTAC	6 cut(s)	37, 386, 485, 496, 695, 1372
RseI	CAYNNNNRTG	2 cut(s)	324, 1343
SapI	GCTCTTC	1 cut(s)	1340
SaqAI	TTAA	6 cut(s)	726, 866, 890, 1013, 1199, 1260
SatI	GCNGC	3 cut(s)	789, 948, 1446
Sau3AI	GATC	4 cut(s)	121, 139, 858, 1090
SchI	GAGTC	2 cut(s)	173, 973
ScrFI	CCNGG	1 cut(s)	1315
SduI	GDGCHC	2 cut(s)	96, 1335
SfaNI	GCATC	3 cut(s)	151, 749, 1152
SfcI	CTRYAG	1 cut(s)	393
SfuI	TTCGAA	2 cut(s)	437, 614
SmiMI	CAYNNNNRTG	2 cut(s)	324, 1343
SmlI	CTYRAG	1 cut(s)	1463
SmoI	CTYRAG	1 cut(s)	1463
SsiI	CCGC	4 cut(s)	280, 788, 967, 1022
SspI	AATATT	1 cut(s)	1441
SspMI	CTAG	2 cut(s)	165, 218
StyD4I	CCNGG	1 cut(s)	1313
StyI	CCWWGG	1 cut(s)	300
TaaI	ACNGT	5 cut(s)	130, 290, 586, 895, 1240
TaiI	ACGT	1 cut(s)	324
TaqI	TCGA	4 cut(s)	363, 437, 614, 1147
TatI	WGTACW	1 cut(s)	36
TauI	GCSGC	1 cut(s)	791
TfiI	GAWTC	6 cut(s)	74, 311, 621, 645, 927, 1424
Tru1I	TTAA	6 cut(s)	726, 866, 890, 1013, 1199, 1260
Tru9I	TTAA	6 cut(s)	726, 866, 890, 1013, 1199, 1260
TscAI	CASTG	3 cut(s)	135, 1056, 1234
TseFI	GTSAC	5 cut(s)	760, 1042, 1063, 1234, 1429
TseI	GCWGC	2 cut(s)	947, 1445
Tsp45I	GTSAC	5 cut(s)	760, 1042, 1063, 1234, 1429
TspDTI	ATGAA	8 cut(s)	132, 578, 593, 919, 1116, 1198, 1320, 1327
TspGWI	ACGGA	4 cut(s)	56, 173, 1083, 1487
TspRI	CASTG	3 cut(s)	135, 1056, 1234
VspI	ATTAAT	1 cut(s)	866
XapI	RAATTY	4 cut(s)	911, 984, 1205, 1307
XceI	RCATGY	1 cut(s)	392
XmnI	GAANNNNTTC	1 cut(s)	1209
XspI	CTAG	2 cut(s)	165, 218
Zsp2I	ATGCAT	1 cut(s)	411

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.