Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0006204

Physical Location & Seq

Genomic Coordinates Forward (+)

38555220 .. 38564293

Gene Structure 9074 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00113060.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 780 bp

ATGGATGTTAATCTAAGCAATGCATCCCTTGTTTTTATATCGGTCACATTTGCCACAATGTGTAAATCCGCTGCTCCAATATTTCTCCTTCTATTTGCTTTCGCTTTCAGGTTGGAATCTCCGAGCTATAAACTTTCGGGAATCATATTGGTTATATCCATTGGAATACTACTAACAGTTGCAAAGGAGACAGAATTTGATTTCTGGGGATTCATTTTTGTCATGCTTGCTGCTGTTATGTCTGGTTTCCGATGGTGTATGACTCAAATTCTTCTTCAGAAAGAATCATATGGTTTGAAAAATCCACTTACTTTGATGAGCTATGTGACTCCGGTTATGGCAGTGGTGACCGCCCTGCTCTCTTTTATTTTTGATCCATGGGATGAACTTAGAAGAAACAATTACTTCAATAATCCTGAGCATATCAGTCGAAGTTGCTTGCTGATGCTTTTTGGTGGAACCCTTGCCTTTTTCATGGTATTAACAGAATTCATTCTTGTCTCAGTGACCAGTGCTGTTACTGTTACAATTGCCGGTGTTGTCAAGGAGGCTCTCACTATATTGGTTGCAGTCATTTACTTCCATGATGAATTTACTATGTTAAAAGGAGTTGGACTCTTCACAATTATTCTTGGTGTGAGTTTATTCAACTGGTACAAGTACGAAAAACTAAAGAAGGGTCACACAAGTGAAGACGACATGGAGGAATCAGTCGTGATAAATAATGCTGCAAAATATGTTATTCTTGAAGAGACAGATGAGCAAGATGATGGCACATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005793 GO:0006810 GO:0006811 GO:0006820 GO:0008150 GO:0015711 GO:0015780 GO:0015786 GO:0015931 GO:0034220 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0051179 GO:0051234 GO:0055085 GO:0071702 GO:0071705 GO:0090481 GO:0098656 GO:1901264

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TPT

Protein Analysis

259

Amino Acids

29.07

Weight (kDa)

4.83

Isoelectric Point (pI)

40.01

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TPT	PF03151	5 - 217	1.5e-18	Triose-phosphate Transporter family
UAA	PF08449	5 - 217	4.1e-08	UAA transporter family
PUNUT	PF16913	50 - 225	4.5e-06	Purine nucleobase transmembrane transport
EamA	PF00892	69 - 217	1.1e-06	EamA-like transporter family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006204)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G06470 AT1G06470 AT1G06470 AT1G06470
fragaria_vesca	FvH4_6g27881 FvH4_6g27890
malus_domestica	MD09G1233800.v1.1 MD17G1230200.v1.1
prunus_persica	Prupe.3G108900_v2.0.a1 Prupe.3G108900_v2.0.a1
pyrus_communis	pycom09g15210 pycom09g15220 pycom17g23310
rosa_chinensis	RchiOBHm_Chr2g0131361
rosa_laevigata	RLG00000019180
rosa_multiflora	Rmu_ssc0000019.1_g000035
rosa_roxburghii	Rroxscaffold_2G00113060 Rroxscaffold_4G00296720 Rroxscaffold_4G00296730 Rroxscaffold_4G00296740
rosa_rugosa	Rorug02G0296000 Rorug02G0296100
rosa_samantha	Rh2AG349300 Rh2BG356300 Rh2CG335200 Rh2DG374200
rosa_wichuraiana	Rw2G028350

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	69, 351
AclWI	GGATC	1 cut(s)	368
AcsI	RAATTY	4 cut(s)	194, 267, 488, 590
AcuI	CTGAAG	1 cut(s)	260
AdeI	CACNNNGTG	1 cut(s)	60
AfaI	GTAC	2 cut(s)	656, 662
AgsI	TTSAA	4 cut(s)	298, 409, 649, 749
AleI	CACNNNNGTG	1 cut(s)	687
AluBI	AGCT	2 cut(s)	126, 321
AluI	AGCT	2 cut(s)	126, 321
Alw26I	GTCTC	3 cut(s)	182, 505, 746
AlwI	GGATC	1 cut(s)	368
ApeKI	GCWGC	3 cut(s)	71, 230, 728
ApoI	RAATTY	4 cut(s)	194, 267, 488, 590
Asp700I	GAANNNNTTC	1 cut(s)	492
AsuHPI	GGTGA	1 cut(s)	358
BbsI	GAAGAC	1 cut(s)	699
BbvI	GCAGC	3 cut(s)	58, 217, 715
BccI	CCATC	2 cut(s)	246, 764
BcgI	CGANNNNNNTGC	2 cut(s)	410, 444
BcoDI	GTCTC	3 cut(s)	182, 505, 746
BisI	GCNGC	3 cut(s)	72, 231, 729
BlsI	GCNGC	3 cut(s)	73, 232, 730
BmiI	GGNNCC	1 cut(s)	460
BmsI	GCATC	2 cut(s)	32, 435
BpiI	GAAGAC	1 cut(s)	699
BplI	GAGNNNNNCTC	2 cut(s)	600, 632
Bpu10I	CCTNAGC	1 cut(s)	417
BsaBI	GATNNNNATC	1 cut(s)	9
BsaJI	CCNNGG	1 cut(s)	377
BsaWI	WCCGGW	1 cut(s)	331
Bse118I	RCCGGY	1 cut(s)	533
Bse1I	ACTGG	2 cut(s)	510, 656
Bse3DI	GCAATG	1 cut(s)	25
Bse8I	GATNNNNATC	1 cut(s)	9
BseDI	CCNNGG	1 cut(s)	377
BseGI	GGATG	3 cut(s)	10, 23, 388
BseJI	GATNNNNATC	1 cut(s)	9
BseMI	GCAATG	1 cut(s)	25
BseMII	CTCAG	2 cut(s)	408, 516
BseNI	ACTGG	2 cut(s)	510, 656
BseXI	GCAGC	3 cut(s)	58, 217, 715
BsiSI	CCGG	2 cut(s)	332, 534
BsmAI	GTCTC	3 cut(s)	182, 505, 746
Bsp143I	GATC	1 cut(s)	373
Bsp19I	CCATGG	1 cut(s)	377
BspACI	CCGC	2 cut(s)	69, 351
BspCNI	CTCAG	2 cut(s)	409, 515
BspLI	GGNNCC	1 cut(s)	460
BspPI	GGATC	1 cut(s)	368
BsrDI	GCAATG	1 cut(s)	25
BsrFI	RCCGGY	1 cut(s)	533
BsrI	ACTGG	2 cut(s)	510, 656
BssAI	RCCGGY	1 cut(s)	533
BssECI	CCNNGG	1 cut(s)	377
BssMI	GATC	1 cut(s)	373
BssT1I	CCWWGG	1 cut(s)	377
Bst4CI	ACNGT	2 cut(s)	178, 523
Bst6I	CTCTTC	2 cut(s)	623, 744
BstC8I	GCNNGC	2 cut(s)	228, 440
BstDEI	CTNAG	4 cut(s)	14, 389, 417, 502
BstDSI	CCRYGG	1 cut(s)	377
BstEII	GGTNACC	1 cut(s)	346
BstF5I	GGATG	3 cut(s)	10, 23, 388
BstKTI	GATC	1 cut(s)	376
BstMAI	GTCTC	3 cut(s)	182, 505, 746
BstMBI	GATC	1 cut(s)	373
BstPI	GGTNACC	1 cut(s)	346
BstV1I	GCAGC	3 cut(s)	58, 217, 715
BstV2I	GAAGAC	1 cut(s)	699
BtgI	CCRYGG	1 cut(s)	377
BtsCI	GGATG	3 cut(s)	10, 23, 388
BtsI	GCAGTG	1 cut(s)	348
BtsIMutI	CAGTG	3 cut(s)	348, 510, 517
Cac8I	GCNNGC	2 cut(s)	228, 440
Cfr10I	RCCGGY	1 cut(s)	533
Csp6I	GTAC	2 cut(s)	655, 661
CspCI	CAANNNNNGTGG	2 cut(s)	294, 329
CviAII	CATG	5 cut(s)	223, 378, 475, 584, 700
CviJI	RGCY	3 cut(s)	126, 321, 551
CviKI_1	RGCY	3 cut(s)	126, 321, 551
CviQI	GTAC	2 cut(s)	655, 661
DdeI	CTNAG	4 cut(s)	14, 389, 417, 502
DpnI	GATC	1 cut(s)	375
DpnII	GATC	1 cut(s)	373
DraIII	CACNNNGTG	1 cut(s)	60
Eam1104I	CTCTTC	2 cut(s)	623, 744
EarI	CTCTTC	2 cut(s)	623, 744
Eco130I	CCWWGG	1 cut(s)	377
Eco57I	CTGAAG	1 cut(s)	260
Eco91I	GGTNACC	1 cut(s)	346
EcoO65I	GGTNACC	1 cut(s)	346
EcoRI	GAATTC	1 cut(s)	488
EcoT14I	CCWWGG	1 cut(s)	377
EcoT22I	ATGCAT	1 cut(s)	25
ErhI	CCWWGG	1 cut(s)	377
FaeI	CATG	5 cut(s)	226, 381, 478, 587, 703
FatI	CATG	5 cut(s)	222, 377, 474, 583, 699
FauNDI	CATATG	1 cut(s)	289
Fnu4HI	GCNGC	3 cut(s)	72, 231, 729
FokI	GGATG	3 cut(s)	10, 17, 395
Fsp4HI	GCNGC	3 cut(s)	72, 231, 729
GluI	GCNGC	3 cut(s)	72, 231, 729
HapII	CCGG	2 cut(s)	332, 534
Hin1II	CATG	5 cut(s)	226, 381, 478, 587, 703
HinfI	GANTC	8 cut(s)	116, 141, 210, 262, 284, 328, 615, 707
HpaII	CCGG	2 cut(s)	332, 534
HphI	GGTGA	1 cut(s)	358
Hpy188I	TCNGA	3 cut(s)	123, 251, 279
Hpy188III	TCNNGA	4 cut(s)	138, 416, 715, 746
HpyAV	CCTTC	2 cut(s)	98, 670
HpyCH4III	ACNGT	2 cut(s)	178, 523
HpyCH4V	TGCA	4 cut(s)	23, 182, 569, 731
HpyF3I	CTNAG	4 cut(s)	14, 389, 417, 502
Hsp92II	CATG	5 cut(s)	226, 381, 478, 587, 703
Kzo9I	GATC	1 cut(s)	373
LmnI	GCTCC	1 cut(s)	79
LpnPI	CCDG	9 cut(s)	94, 190, 228, 345, 368, 429, 523, 547, 637
Lsp1109I	GCAGC	3 cut(s)	58, 217, 715
LweI	GCATC	2 cut(s)	32, 435
MaeIII	GTNAC	7 cut(s)	43, 325, 346, 505, 517, 523, 680
MalI	GATC	1 cut(s)	375
MboI	GATC	1 cut(s)	373
MboII	GAAGA	6 cut(s)	263, 266, 405, 610, 704, 761
MfeI	CAATTG	1 cut(s)	528
MluCI	AATT	7 cut(s)	194, 267, 400, 488, 528, 590, 624
MlyI	GAGTC	3 cut(s)	256, 322, 609
MmeI	TCCRAC	2 cut(s)	93, 592
MnlI	CCTC	2 cut(s)	541, 697
Mph1103I	ATGCAT	1 cut(s)	25
MroXI	GAANNNNTTC	1 cut(s)	492
MseI	TTAA	3 cut(s)	9, 482, 602
MslI	CAYNNNNRTG	1 cut(s)	687
MspA1I	CMGCKG	1 cut(s)	71
MspI	CCGG	2 cut(s)	332, 534
MunI	CAATTG	1 cut(s)	528
NcoI	CCATGG	1 cut(s)	377
NdeI	CATATG	1 cut(s)	289
NdeII	GATC	1 cut(s)	373
NlaIII	CATG	5 cut(s)	226, 381, 478, 587, 703
NlaIV	GGNNCC	1 cut(s)	460
NmuCI	GTSAC	5 cut(s)	43, 325, 346, 505, 680
NsiI	ATGCAT	1 cut(s)	25
OliI	CACNNNNGTG	1 cut(s)	687
PdmI	GAANNNNTTC	1 cut(s)	492
PfeI	GAWTC	5 cut(s)	116, 141, 210, 284, 707
PkrI	GCNGC	3 cut(s)	73, 232, 730
PleI	GAGTC	3 cut(s)	256, 322, 609
PpsI	GAGTC	3 cut(s)	256, 322, 609
PspEI	GGTNACC	1 cut(s)	346
PspN4I	GGNNCC	1 cut(s)	460
RsaI	GTAC	2 cut(s)	656, 662
RsaNI	GTAC	2 cut(s)	655, 661
RseI	CAYNNNNRTG	1 cut(s)	687
SaqAI	TTAA	3 cut(s)	9, 482, 602
SatI	GCNGC	3 cut(s)	72, 231, 729
Sau3AI	GATC	1 cut(s)	373
SchI	GAGTC	3 cut(s)	256, 322, 609
SetI	ASST	3 cut(s)	113, 128, 323
SfaNI	GCATC	2 cut(s)	32, 435
SmiMI	CAYNNNNRTG	1 cut(s)	687
Sse9I	AATT	7 cut(s)	194, 267, 400, 488, 528, 590, 624
SsiI	CCGC	2 cut(s)	69, 351
SspI	AATATT	1 cut(s)	81
StyI	CCWWGG	1 cut(s)	377
TaaI	ACNGT	2 cut(s)	178, 523
TaqI	TCGA	1 cut(s)	430
TaqII	GACCGA	1 cut(s)	31
TasI	AATT	7 cut(s)	194, 267, 400, 488, 528, 590, 624
TfiI	GAWTC	5 cut(s)	116, 141, 210, 284, 707
Tru1I	TTAA	3 cut(s)	9, 482, 602
Tru9I	TTAA	3 cut(s)	9, 482, 602
TscAI	CASTG	3 cut(s)	348, 510, 517
TseFI	GTSAC	5 cut(s)	43, 325, 346, 505, 680
TseI	GCWGC	3 cut(s)	71, 230, 728
Tsp45I	GTSAC	5 cut(s)	43, 325, 346, 505, 680
TspDTI	ATGAA	5 cut(s)	202, 399, 463, 481, 603
TspRI	CASTG	3 cut(s)	348, 510, 517
XapI	RAATTY	4 cut(s)	194, 267, 488, 590
XmnI	GAANNNNTTC	1 cut(s)	492
Zsp2I	ATGCAT	1 cut(s)	25

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.