Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000004

Orthogroup ID

OG0006204

Physical Location & Seq

Genomic Coordinates Forward (+)

16790441 .. 16795897

Gene Structure 5457 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_4G00296730.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 387 bp

ATGTCTTGGAGAGATTATTTTGCTAAAGAGGGGACTTTGCCTTTCACAGTTGTACCAACGGCTCTTGGAACAGCAATGGATGTTAATCTAAGCAATGCATCCCTTGTTTTTATATCGGTCACATTTGCCACAATGTCCATCTCTTTTCTCTCTGCTCTCACTCCAACCGAAGACCACACACTCCGGCCATTAACTCCGCCGCACACCACCATCAAAATCCGAACCTATTTCCGATCAAAAGCTCAAACCATGAGGCCAAGCCTTGTTGTCCTTCAAGATGGCTATTGCAAACTGAACCGGTCTCCATTTCATCCGACCCTTGGCGTTGACTTCTACTCCCACCTCAACTCCGGCAGATTGAAGCTCCACAGAAGCTTAGTGAGCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005793 GO:0006810 GO:0006811 GO:0006820 GO:0008150 GO:0015711 GO:0015780 GO:0015786 GO:0015931 GO:0034220 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0051179 GO:0051234 GO:0055085 GO:0071702 GO:0071705 GO:0090481 GO:0098656 GO:1901264

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TPT

Protein Analysis

128

Amino Acids

14.33

Weight (kDa)

9.91

Isoelectric Point (pI)

44.91

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006204)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G06470 AT1G06470 AT1G06470 AT1G06470
fragaria_vesca	FvH4_6g27881 FvH4_6g27890
malus_domestica	MD09G1233800.v1.1 MD17G1230200.v1.1
prunus_persica	Prupe.3G108900_v2.0.a1 Prupe.3G108900_v2.0.a1
pyrus_communis	pycom09g15210 pycom09g15220 pycom17g23310
rosa_chinensis	RchiOBHm_Chr2g0131361
rosa_laevigata	RLG00000019180
rosa_multiflora	Rmu_ssc0000019.1_g000035
rosa_roxburghii	Rroxscaffold_2G00113060 Rroxscaffold_4G00296720 Rroxscaffold_4G00296730 Rroxscaffold_4G00296740
rosa_rugosa	Rorug02G0296000 Rorug02G0296100
rosa_samantha	Rh2AG349300 Rh2BG356300 Rh2CG335200 Rh2DG374200
rosa_wichuraiana	Rw2G028350

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	197, 200
AcoI	YGGCCR	1 cut(s)	185
AfaI	GTAC	1 cut(s)	54
AfiI	CCNNNNNNNGG	1 cut(s)	320
AgeI	ACCGGT	1 cut(s)	297
AgsI	TTSAA	2 cut(s)	275, 361
AluBI	AGCT	4 cut(s)	242, 364, 375, 384
AluI	AGCT	4 cut(s)	242, 364, 375, 384
Alw26I	GTCTC	1 cut(s)	306
AoxI	GGCC	2 cut(s)	185, 254
AsiGI	ACCGGT	1 cut(s)	297
BaeI	ACNNNNGTAYC	2 cut(s)	36, 69
BbsI	GAAGAC	1 cut(s)	177
BccI	CCATC	3 cut(s)	146, 218, 272
BceAI	ACGGC	1 cut(s)	75
BcoDI	GTCTC	1 cut(s)	306
BisI	GCNGC	1 cut(s)	200
BlsI	GCNGC	1 cut(s)	201
BmsI	GCATC	1 cut(s)	107
BpiI	GAAGAC	1 cut(s)	177
BsaBI	GATNNNNATC	1 cut(s)	84
BsaI	GGTCTC	1 cut(s)	306
BsaJI	CCNNGG	1 cut(s)	319
BsaWI	WCCGGW	1 cut(s)	297
BsaXI	ACNNNNNCTCC	4 cut(s)	320, 332, 350, 362
Bsc4I	CCNNNNNNNGG	1 cut(s)	320
Bse118I	RCCGGY	1 cut(s)	297
Bse3DI	GCAATG	2 cut(s)	81, 100
Bse8I	GATNNNNATC	1 cut(s)	84
BseDI	CCNNGG	1 cut(s)	319
BseGI	GGATG	3 cut(s)	85, 98, 310
BseJI	GATNNNNATC	1 cut(s)	84
BseLI	CCNNNNNNNGG	1 cut(s)	320
BseMI	GCAATG	2 cut(s)	81, 100
BshFI	GGCC	2 cut(s)	187, 256
BshTI	ACCGGT	1 cut(s)	297
BsiSI	CCGG	3 cut(s)	184, 298, 351
BslFI	GGGAC	1 cut(s)	46
BslI	CCNNNNNNNGG	1 cut(s)	320
BsmAI	GTCTC	1 cut(s)	306
BsmFI	GGGAC	1 cut(s)	46
BsnI	GGCC	2 cut(s)	187, 256
Bso31I	GGTCTC	1 cut(s)	306
Bsp143I	GATC	1 cut(s)	233
BspACI	CCGC	2 cut(s)	197, 200
BspANI	GGCC	2 cut(s)	187, 256
BspTNI	GGTCTC	1 cut(s)	306
BsrDI	GCAATG	2 cut(s)	81, 100
BsrFI	RCCGGY	1 cut(s)	297
BssAI	RCCGGY	1 cut(s)	297
BssECI	CCNNGG	1 cut(s)	319
BssMI	GATC	1 cut(s)	233
BssT1I	CCWWGG	1 cut(s)	319
Bst4CI	ACNGT	1 cut(s)	49
BstDEI	CTNAG	2 cut(s)	89, 376
BstF5I	GGATG	3 cut(s)	85, 98, 310
BstKTI	GATC	1 cut(s)	236
BstMAI	GTCTC	1 cut(s)	306
BstMBI	GATC	1 cut(s)	233
BstMWI	GCNNNNNNNGC	1 cut(s)	381
BstV2I	GAAGAC	1 cut(s)	177
BsuRI	GGCC	2 cut(s)	187, 256
BtsCI	GGATG	3 cut(s)	85, 98, 310
Cfr10I	RCCGGY	1 cut(s)	297
Csp6I	GTAC	1 cut(s)	53
CspAI	ACCGGT	1 cut(s)	297
CviAII	CATG	1 cut(s)	250
CviJI	RGCY	9 cut(s)	62, 187, 242, 256, 261, 282, 364, 375, 384
CviKI_1	RGCY	9 cut(s)	62, 187, 242, 256, 261, 282, 364, 375, 384
CviQI	GTAC	1 cut(s)	53
DdeI	CTNAG	2 cut(s)	89, 376
DpnI	GATC	1 cut(s)	235
DpnII	GATC	1 cut(s)	233
EaeI	YGGCCR	1 cut(s)	185
EciI	GGCGGA	1 cut(s)	186
Eco130I	CCWWGG	1 cut(s)	319
Eco31I	GGTCTC	1 cut(s)	306
EcoT14I	CCWWGG	1 cut(s)	319
EcoT22I	ATGCAT	1 cut(s)	100
ErhI	CCWWGG	1 cut(s)	319
FaeI	CATG	1 cut(s)	253
FaiI	YATR	2 cut(s)	113, 251
FaqI	GGGAC	1 cut(s)	46
FatI	CATG	1 cut(s)	249
Fnu4HI	GCNGC	1 cut(s)	200
FokI	GGATG	3 cut(s)	85, 92, 297
Fsp4HI	GCNGC	1 cut(s)	200
GluI	GCNGC	1 cut(s)	200
HaeIII	GGCC	2 cut(s)	187, 256
HapII	CCGG	3 cut(s)	184, 298, 351
Hin1II	CATG	1 cut(s)	253
HincII	GTYRAC	1 cut(s)	328
HindII	GTYRAC	1 cut(s)	328
HindIII	AAGCTT	1 cut(s)	373
HpaII	CCGG	3 cut(s)	184, 298, 351
Hpy166II	GTNNAC	1 cut(s)	328
Hpy188I	TCNGA	3 cut(s)	221, 233, 315
Hpy188III	TCNNGA	1 cut(s)	275
Hpy8I	GTNNAC	1 cut(s)	328
HpyAV	CCTTC	1 cut(s)	281
HpyCH4III	ACNGT	1 cut(s)	49
HpyCH4V	TGCA	2 cut(s)	98, 288
HpyF10VI	GCNNNNNNNGC	1 cut(s)	381
HpyF3I	CTNAG	2 cut(s)	89, 376
Hsp92II	CATG	1 cut(s)	253
Kzo9I	GATC	1 cut(s)	233
LmnI	GCTCC	1 cut(s)	369
LpnPI	CCDG	3 cut(s)	197, 311, 364
LweI	GCATC	1 cut(s)	107
MaeIII	GTNAC	1 cut(s)	118
MalI	GATC	1 cut(s)	235
MboI	GATC	1 cut(s)	233
MboII	GAAGA	1 cut(s)	182
MmeI	TCCRAC	2 cut(s)	188, 338
MnlI	CCTC	3 cut(s)	22, 246, 353
Mph1103I	ATGCAT	1 cut(s)	100
MseI	TTAA	2 cut(s)	84, 191
MspI	CCGG	3 cut(s)	184, 298, 351
MwoI	GCNNNNNNNGC	1 cut(s)	381
NdeII	GATC	1 cut(s)	233
NlaIII	CATG	1 cut(s)	253
NmuCI	GTSAC	1 cut(s)	118
NsiI	ATGCAT	1 cut(s)	100
PinAI	ACCGGT	1 cut(s)	297
PkrI	GCNGC	1 cut(s)	201
RsaI	GTAC	1 cut(s)	54
RsaNI	GTAC	1 cut(s)	53
SaqAI	TTAA	2 cut(s)	84, 191
SatI	GCNGC	1 cut(s)	200
Sau3AI	GATC	1 cut(s)	233
SetI	ASST	6 cut(s)	227, 244, 345, 366, 377, 386
SfaNI	GCATC	1 cut(s)	107
SsiI	CCGC	2 cut(s)	197, 200
StyI	CCWWGG	1 cut(s)	319
TaaI	ACNGT	1 cut(s)	49
TaqII	GACCGA	1 cut(s)	106
TauI	GCSGC	1 cut(s)	202
Tru1I	TTAA	2 cut(s)	84, 191
Tru9I	TTAA	2 cut(s)	84, 191
TseFI	GTSAC	1 cut(s)	118
Tsp45I	GTSAC	1 cut(s)	118
TspDTI	ATGAA	1 cut(s)	299
Zsp2I	ATGCAT	1 cut(s)	100

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.