Rroxscaffold_4G00296740

sugar phosphate phosphate translocator

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000004
Physical Location & Seq
Forward (+)
16796358 .. 16796636
279 bp
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UTR
Exon/CDS
Intron
Rroxscaffold_4G00296740.1

Sequence Viewer

Length: 279 bp
ATGGTACAGAGTGGTTTGGACACGGAAAAGGTTGAGAATTCGGGAGCCAAAGTCTCTCGAGTGGAAGCCAAGCATCGGGTCTTCACGGGGATCCCTCATTCTCTCGCCGGGTTTGATGAAGATGGGAGAGTGCAAGGTGATTTGGTAAATGCGGATGCGACGGTAGAAGAAGACCCTGAATTTGAATTGCCTCTGCCCCAACGGGGAGAGCTAGAATACAAGGGTTTAGATATGGACGGGGACCGTATATCTCCAAGGGGAAGCAAGGGTTTAGCTTGA

Protein Analysis

92

Amino Acids

9.97

Weight (kDa)

4.61

Isoelectric Point (pI)

27.24

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 152
AclWI GGATC 2 cut(s) 85, 98
AcsI RAATTY 2 cut(s) 37, 179
AfaI GTAC 1 cut(s) 6
AfiI CCNNNNNNNGG 2 cut(s) 75, 203
AgsI TTSAA 1 cut(s) 185
AluBI AGCT 2 cut(s) 211, 275
AluI AGCT 2 cut(s) 211, 275
Alw26I GTCTC 1 cut(s) 58
AlwI GGATC 2 cut(s) 85, 98
Ama87I CYCGRG 1 cut(s) 57
ApoI RAATTY 2 cut(s) 37, 179
ArsI GACNNNNNNTTYG 2 cut(s) 164, 196
AspS9I GGNCC 1 cut(s) 241
AsuC2I CCSGG 1 cut(s) 109
AsuHPI GGTGA 1 cut(s) 149
AvaI CYCGRG 1 cut(s) 57
AvaII GGWCC 1 cut(s) 241
BamHI GGATCC 1 cut(s) 90
BbsI GAAGAC 2 cut(s) 73, 177
BccI CCATC 1 cut(s) 116
BcnI CCSGG 1 cut(s) 109
BcoDI GTCTC 1 cut(s) 58
BfaI CTAG 1 cut(s) 212
Bme1390I CCNGG 1 cut(s) 109
Bme18I GGWCC 1 cut(s) 241
BmeT110I CYCGRG 1 cut(s) 57
BmgT120I GGNCC 1 cut(s) 241
BmiI GGNNCC 3 cut(s) 46, 92, 242
BmrFI CCNGG 1 cut(s) 109
BmsI GCATC 2 cut(s) 82, 145
BpiI GAAGAC 2 cut(s) 73, 177
BpuMI CCSGG 1 cut(s) 109
BsaJI CCNNGG 1 cut(s) 254
BsaXI ACNNNNNCTCC 2 cut(s) 36, 66
Bsc4I CCNNNNNNNGG 2 cut(s) 75, 203
BseDI CCNNGG 1 cut(s) 254
BseGI GGATG 1 cut(s) 160
BseLI CCNNNNNNNGG 2 cut(s) 75, 203
BsiHKCI CYCGRG 1 cut(s) 57
BsiSI CCGG 1 cut(s) 108
BslFI GGGAC 1 cut(s) 254
BslI CCNNNNNNNGG 2 cut(s) 75, 203
BsmAI GTCTC 1 cut(s) 58
BsmFI GGGAC 1 cut(s) 254
BsoBI CYCGRG 1 cut(s) 57
Bsp143I GATC 1 cut(s) 90
BspACI CCGC 1 cut(s) 152
BspLI GGNNCC 3 cut(s) 46, 92, 242
BspPI GGATC 2 cut(s) 85, 98
BssECI CCNNGG 1 cut(s) 254
BssMI GATC 1 cut(s) 90
BssT1I CCWWGG 1 cut(s) 254
Bst4CI ACNGT 2 cut(s) 163, 245
BstF5I GGATG 1 cut(s) 160
BstKTI GATC 1 cut(s) 93
BstMAI GTCTC 1 cut(s) 58
BstMBI GATC 1 cut(s) 90
BstSCI CCNGG 1 cut(s) 107
BstV2I GAAGAC 2 cut(s) 73, 177
BstX2I RGATCY 1 cut(s) 90
BstYI RGATCY 1 cut(s) 90
BtsCI GGATG 1 cut(s) 160
Cfr13I GGNCC 1 cut(s) 241
Csp6I GTAC 1 cut(s) 5
CviJI RGCY 4 cut(s) 47, 68, 211, 275
CviKI_1 RGCY 4 cut(s) 47, 68, 211, 275
CviQI GTAC 1 cut(s) 5
DpnI GATC 1 cut(s) 92
DpnII GATC 1 cut(s) 90
Eco130I CCWWGG 1 cut(s) 254
Eco47I GGWCC 1 cut(s) 241
Eco88I CYCGRG 1 cut(s) 57
EcoRI GAATTC 1 cut(s) 37
EcoT14I CCWWGG 1 cut(s) 254
ErhI CCWWGG 1 cut(s) 254
FaiI YATR 2 cut(s) 233, 248
FaqI GGGAC 1 cut(s) 254
FokI GGATG 1 cut(s) 167
FspBI CTAG 1 cut(s) 212
HapII CCGG 1 cut(s) 108
HpaII CCGG 1 cut(s) 108
HphI GGTGA 1 cut(s) 149
Hpy188III TCNNGA 2 cut(s) 42, 57
Hpy99I CGWCG 1 cut(s) 163
HpyCH4III ACNGT 2 cut(s) 163, 245
HpyCH4V TGCA 1 cut(s) 133
Kzo9I GATC 1 cut(s) 90
LmnI GCTCC 1 cut(s) 44
LpnPI CCDG 2 cut(s) 121, 189
LweI GCATC 2 cut(s) 82, 145
MaeI CTAG 1 cut(s) 212
MalI GATC 1 cut(s) 92
MboI GATC 1 cut(s) 90
MboII GAAGA 4 cut(s) 73, 131, 179, 182
MflI RGATCY 1 cut(s) 90
MluCI AATT 3 cut(s) 37, 179, 185
MnlI CCTC 2 cut(s) 105, 201
MspI CCGG 1 cut(s) 108
MspR9I CCNGG 1 cut(s) 109
NciI CCSGG 1 cut(s) 109
NdeII GATC 1 cut(s) 90
NlaIV GGNNCC 3 cut(s) 46, 92, 242
PaeR7I CTCGAG 1 cut(s) 57
PspN4I GGNNCC 3 cut(s) 46, 92, 242
PspPI GGNCC 1 cut(s) 241
PsuI RGATCY 1 cut(s) 90
RsaI GTAC 1 cut(s) 6
RsaNI GTAC 1 cut(s) 5
Sau3AI GATC 1 cut(s) 90
Sau96I GGNCC 1 cut(s) 241
ScrFI CCNGG 1 cut(s) 109
SetI ASST 4 cut(s) 33, 139, 213, 277
SfaNI GCATC 2 cut(s) 82, 145
Sfr274I CTCGAG 1 cut(s) 57
SinI GGWCC 1 cut(s) 241
SlaI CTCGAG 1 cut(s) 57
SmlI CTYRAG 1 cut(s) 57
SmoI CTYRAG 1 cut(s) 57
Sse9I AATT 3 cut(s) 37, 179, 185
SsiI CCGC 1 cut(s) 152
SspMI CTAG 1 cut(s) 212
StyD4I CCNGG 1 cut(s) 107
StyI CCWWGG 1 cut(s) 254
TaaI ACNGT 2 cut(s) 163, 245
TaqI TCGA 1 cut(s) 58
TasI AATT 3 cut(s) 37, 179, 185
TspDTI ATGAA 1 cut(s) 132
TspGWI ACGGA 1 cut(s) 38
VpaK11BI GGWCC 1 cut(s) 241
XapI RAATTY 2 cut(s) 37, 179
XhoI CTCGAG 1 cut(s) 57
XspI CTAG 1 cut(s) 212
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.