Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb6

Orthogroup ID

OG0006204

Physical Location & Seq

Genomic Coordinates Reverse (-)

21456130 .. 21458795

Gene Structure 2666 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_6g27890.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 753 bp

ATGGTAGAGAGTGGTTTAGACACGGAAAAGGTTGAGAATTCGGGCGCCAAATTCACTCAGAGTGGAAGCCAAGCATCAGGTCTTCACAGAGATCCCTCATTCTCTCGCTGGTTCGATGAAGATGGGAGAGTGCAAGTTGATTTAGGAAATACGGATGCCACGGTAGAAGAAGACCCTAACTTTGAATTGCCTCTGCCCCAAGAGGGAGAGCTAGAAAACAAGGGTTTAGATATGGACAGGGACCGTAGTAATATATCTCCGAGGGGAAGTAAACGCGTGCACAGTGGTGATACCTTTGTTAGTGCTTCTGTCCAGCTAGATGGAAATGATGATGAAAAGTTATTGCCTTTTGACATTGAGAAGGGATCTGCAAGGGAGCTACAGGACAGAGATCACTCTACTTCTAAGGATGACCACAAGGCATTATCCTCCAATTCAAAGTTTCCCATTTCTGCTACAAGTGTACTGAAAACATTGTTCTTCGTACTAGTATGGTACATTTGCAGCCTATTTTTGACATTGTATAACAAAAGTCTGTTGGGAGATAATCTGGGAAAATTCCCCGCTCCCTTATTGATGAATACTGTTCATTTTACAATGCAAGCTATTTTATCGAAGGGAATCACATGGTACTGGTCTCATAGGTTCAAAACCAGTGTTACTATGTCATGGAAAGATTATTTTGCTAAAGAGGGACTTTGCCTTTCACAGTTGTACCAACGGCTCTTGGAACAGCAATGGATGTTAATCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005793 GO:0006810 GO:0006811 GO:0006820 GO:0008150 GO:0015711 GO:0015780 GO:0015786 GO:0015931 GO:0034220 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0051179 GO:0051234 GO:0055085 GO:0071702 GO:0071705 GO:0090481 GO:0098656 GO:1901264

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TPT

Protein Analysis

251

Amino Acids

28.33

Weight (kDa)

5.18

Isoelectric Point (pI)

38.52

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006204)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G06470 AT1G06470 AT1G06470 AT1G06470
fragaria_vesca	FvH4_6g27881 FvH4_6g27890
malus_domestica	MD09G1233800.v1.1 MD17G1230200.v1.1
prunus_persica	Prupe.3G108900_v2.0.a1 Prupe.3G108900_v2.0.a1
pyrus_communis	pycom09g15210 pycom09g15220 pycom17g23310
rosa_chinensis	RchiOBHm_Chr2g0131361
rosa_laevigata	RLG00000019180
rosa_multiflora	Rmu_ssc0000019.1_g000035
rosa_roxburghii	Rroxscaffold_2G00113060 Rroxscaffold_4G00296720 Rroxscaffold_4G00296730 Rroxscaffold_4G00296740
rosa_rugosa	Rorug02G0296000 Rorug02G0296100
rosa_samantha	Rh2AG349300 Rh2BG356300 Rh2CG335200 Rh2DG374200
rosa_wichuraiana	Rw2G028350

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	44
AccBSI	CCGCTC	1 cut(s)	566
AccII	CGCG	1 cut(s)	276
AciI	CCGC	1 cut(s)	564
AclWI	GGATC	2 cut(s)	86, 373
AcsI	RAATTY	3 cut(s)	37, 50, 557
AcyI	GRCGYC	1 cut(s)	45
AfaI	GTAC	5 cut(s)	465, 486, 497, 632, 716
AfiI	CCNNNNNNNGG	1 cut(s)	203
AflIII	ACRYGT	1 cut(s)	274
AgsI	TTSAA	3 cut(s)	185, 438, 649
AhlI	ACTAGT	1 cut(s)	487
AleI	CACNNNNGTG	1 cut(s)	285
AluBI	AGCT	4 cut(s)	211, 316, 379, 605
AluI	AGCT	4 cut(s)	211, 316, 379, 605
Alw21I	GWGCWC	1 cut(s)	282
Alw26I	GTCTC	1 cut(s)	642
Alw44I	GTGCAC	1 cut(s)	278
AlwI	GGATC	2 cut(s)	86, 373
ApaLI	GTGCAC	1 cut(s)	278
ApeKI	GCWGC	1 cut(s)	504
ApoI	RAATTY	3 cut(s)	37, 50, 557
ArsI	GACNNNNNNTTYG	2 cut(s)	164, 196
AspLEI	GCGC	1 cut(s)	47
AspS9I	GGNCC	1 cut(s)	241
AsuHPI	GGTGA	1 cut(s)	299
AvaII	GGWCC	1 cut(s)	241
BaeGI	GKGCMC	1 cut(s)	282
BaeI	ACNNNNGTAYC	4 cut(s)	282, 315, 698, 731
BanI	GGYRCC	1 cut(s)	44
BbsI	GAAGAC	2 cut(s)	74, 177
Bbv12I	GWGCWC	1 cut(s)	282
BbvI	GCAGC	1 cut(s)	516
BccI	CCATC	2 cut(s)	116, 314
BceAI	ACGGC	1 cut(s)	737
BcoDI	GTCTC	1 cut(s)	642
BcuI	ACTAGT	1 cut(s)	487
BfaI	CTAG	3 cut(s)	212, 317, 488
BfmI	CTRYAG	1 cut(s)	380
BfoI	RGCGCY	1 cut(s)	48
BisI	GCNGC	1 cut(s)	505
BlsI	GCNGC	1 cut(s)	506
Bme18I	GGWCC	1 cut(s)	241
BmgT120I	GGNCC	1 cut(s)	241
BmiI	GGNNCC	2 cut(s)	46, 242
BmsI	GCATC	2 cut(s)	83, 145
BpiI	GAAGAC	2 cut(s)	74, 177
BsaBI	GATNNNNATC	1 cut(s)	746
BsaHI	GRCGYC	1 cut(s)	45
BsaI	GGTCTC	1 cut(s)	642
BsaJI	CCNNGG	2 cut(s)	159, 260
Bsc4I	CCNNNNNNNGG	1 cut(s)	203
Bse1I	ACTGG	2 cut(s)	638, 654
Bse3DI	GCAATG	1 cut(s)	743
Bse8I	GATNNNNATC	1 cut(s)	746
BseDI	CCNNGG	2 cut(s)	159, 260
BseGI	GGATG	3 cut(s)	160, 415, 747
BseJI	GATNNNNATC	1 cut(s)	746
BseLI	CCNNNNNNNGG	1 cut(s)	203
BseMI	GCAATG	1 cut(s)	743
BseMII	CTCAG	1 cut(s)	71
BseNI	ACTGG	2 cut(s)	638, 654
BseSI	GKGCMC	1 cut(s)	282
BseXI	GCAGC	1 cut(s)	516
Bsh1236I	CGCG	1 cut(s)	276
BshNI	GGYRCC	1 cut(s)	44
BsiHKAI	GWGCWC	1 cut(s)	282
BslFI	GGGAC	2 cut(s)	254, 708
BslI	CCNNNNNNNGG	1 cut(s)	203
BsmAI	GTCTC	1 cut(s)	642
BsmFI	GGGAC	2 cut(s)	254, 708
Bso31I	GGTCTC	1 cut(s)	642
Bsp1286I	GDGCHC	1 cut(s)	282
Bsp143I	GATC	3 cut(s)	91, 365, 391
BspACI	CCGC	1 cut(s)	564
BspCNI	CTCAG	1 cut(s)	70
BspFNI	CGCG	1 cut(s)	276
BspLI	GGNNCC	2 cut(s)	46, 242
BspPI	GGATC	2 cut(s)	86, 373
BspT107I	GGYRCC	1 cut(s)	44
BspTNI	GGTCTC	1 cut(s)	642
BsrBI	CCGCTC	1 cut(s)	566
BsrDI	GCAATG	1 cut(s)	743
BsrI	ACTGG	2 cut(s)	638, 654
BssECI	CCNNGG	2 cut(s)	159, 260
BssMI	GATC	3 cut(s)	91, 365, 391
BssNI	GRCGYC	1 cut(s)	45
Bst4CI	ACNGT	5 cut(s)	163, 245, 284, 586, 711
BstACI	GRCGYC	1 cut(s)	45
BstC8I	GCNNGC	2 cut(s)	278, 603
BstDEI	CTNAG	2 cut(s)	57, 405
BstDSI	CCRYGG	1 cut(s)	159
BstF5I	GGATG	3 cut(s)	160, 415, 747
BstFNI	CGCG	1 cut(s)	276
BstH2I	RGCGCY	1 cut(s)	48
BstHHI	GCGC	1 cut(s)	47
BstKTI	GATC	3 cut(s)	94, 368, 394
BstMAI	GTCTC	1 cut(s)	642
BstMBI	GATC	3 cut(s)	91, 365, 391
BstSFI	CTRYAG	1 cut(s)	380
BstSLI	GKGCMC	1 cut(s)	282
BstUI	CGCG	1 cut(s)	276
BstV1I	GCAGC	1 cut(s)	516
BstV2I	GAAGAC	2 cut(s)	74, 177
BstX2I	RGATCY	2 cut(s)	91, 365
BstXI	CCANNNNNNTGG	1 cut(s)	320
BstYI	RGATCY	2 cut(s)	91, 365
BtgI	CCRYGG	1 cut(s)	159
BtsCI	GGATG	3 cut(s)	160, 415, 747
BtsIMutI	CAGTG	2 cut(s)	289, 661
Cac8I	GCNNGC	2 cut(s)	278, 603
CfoI	GCGC	1 cut(s)	47
Cfr13I	GGNCC	1 cut(s)	241
Csp6I	GTAC	5 cut(s)	464, 485, 496, 631, 715
CviAII	CATG	2 cut(s)	627, 669
CviJI	RGCY	7 cut(s)	69, 211, 316, 379, 507, 605, 724
CviKI_1	RGCY	7 cut(s)	69, 211, 316, 379, 507, 605, 724
CviQI	GTAC	5 cut(s)	464, 485, 496, 631, 715
DdeI	CTNAG	2 cut(s)	57, 405
DinI	GGCGCC	1 cut(s)	46
DpnI	GATC	3 cut(s)	93, 367, 393
DpnII	GATC	3 cut(s)	91, 365, 391
Eco31I	GGTCTC	1 cut(s)	642
Eco47I	GGWCC	1 cut(s)	241
EcoRI	GAATTC	1 cut(s)	37
EgeI	GGCGCC	1 cut(s)	46
EheI	GGCGCC	1 cut(s)	46
FaeI	CATG	2 cut(s)	630, 672
FaiI	YATR	8 cut(s)	233, 254, 493, 525, 628, 642, 665, 670
FalI	AAGNNNNNCTT	2 cut(s)	681, 713
FaqI	GGGAC	2 cut(s)	254, 708
FatI	CATG	2 cut(s)	626, 668
FauI	CCCGC	1 cut(s)	571
Fnu4HI	GCNGC	1 cut(s)	505
FokI	GGATG	2 cut(s)	167, 422
Fsp4HI	GCNGC	1 cut(s)	505
FspBI	CTAG	3 cut(s)	212, 317, 488
GlaI	GCGC	1 cut(s)	46
GluI	GCNGC	1 cut(s)	505
HaeII	RGCGCY	1 cut(s)	48
HhaI	GCGC	1 cut(s)	47
Hin1I	GRCGYC	1 cut(s)	45
Hin1II	CATG	2 cut(s)	630, 672
Hin6I	GCGC	1 cut(s)	45
HinP1I	GCGC	1 cut(s)	45
HinfI	GANTC	1 cut(s)	621
HphI	GGTGA	1 cut(s)	299
Hpy166II	GTNNAC	3 cut(s)	272, 280, 464
Hpy188I	TCNGA	2 cut(s)	60, 261
Hpy8I	GTNNAC	3 cut(s)	272, 280, 464
HpyAV	CCTTC	2 cut(s)	355, 610
HpyCH4III	ACNGT	5 cut(s)	163, 245, 284, 586, 711
HpyCH4V	TGCA	5 cut(s)	133, 280, 371, 504, 601
HpyF3I	CTNAG	2 cut(s)	57, 405
Hsp92I	GRCGYC	1 cut(s)	45
Hsp92II	CATG	2 cut(s)	630, 672
HspAI	GCGC	1 cut(s)	45
KasI	GGCGCC	1 cut(s)	44
Kzo9I	GATC	3 cut(s)	91, 365, 391
LmnI	GCTCC	2 cut(s)	376, 571
LpnPI	CCDG	8 cut(s)	63, 94, 223, 326, 368, 536, 619, 667
Lsp1109I	GCAGC	1 cut(s)	516
LweI	GCATC	2 cut(s)	83, 145
MaeI	CTAG	3 cut(s)	212, 317, 488
MaeIII	GTNAC	1 cut(s)	658
MalI	GATC	3 cut(s)	93, 367, 393
MbiI	CCGCTC	1 cut(s)	566
MboI	GATC	3 cut(s)	91, 365, 391
MboII	GAAGA	5 cut(s)	74, 131, 179, 182, 472
MflI	RGATCY	2 cut(s)	91, 365
MhlI	GDGCHC	1 cut(s)	282
MluCI	AATT	5 cut(s)	37, 50, 185, 433, 557
MluI	ACGCGT	1 cut(s)	274
Mly113I	GGCGCC	1 cut(s)	45
MnlI	CCTC	6 cut(s)	106, 196, 201, 255, 439, 685
MseI	TTAA	1 cut(s)	746
MslI	CAYNNNNRTG	1 cut(s)	285
MvnI	CGCG	1 cut(s)	276
NarI	GGCGCC	1 cut(s)	45
NdeII	GATC	3 cut(s)	91, 365, 391
NlaIII	CATG	2 cut(s)	630, 672
NlaIV	GGNNCC	2 cut(s)	46, 242
OliI	CACNNNNGTG	1 cut(s)	285
PfeI	GAWTC	1 cut(s)	621
PkrI	GCNGC	1 cut(s)	506
PluTI	GGCGCC	1 cut(s)	48
PspN4I	GGNNCC	2 cut(s)	46, 242
PspPI	GGNCC	1 cut(s)	241
PsuI	RGATCY	2 cut(s)	91, 365
RsaI	GTAC	5 cut(s)	465, 486, 497, 632, 716
RsaNI	GTAC	5 cut(s)	464, 485, 496, 631, 715
RseI	CAYNNNNRTG	1 cut(s)	285
SaqAI	TTAA	1 cut(s)	746
SatI	GCNGC	1 cut(s)	505
Sau3AI	GATC	3 cut(s)	91, 365, 391
Sau96I	GGNCC	1 cut(s)	241
SduI	GDGCHC	1 cut(s)	282
SetI	ASST	8 cut(s)	33, 82, 213, 296, 318, 381, 607, 647
SfaNI	GCATC	2 cut(s)	83, 145
SfcI	CTRYAG	1 cut(s)	380
SfoI	GGCGCC	1 cut(s)	46
SinI	GGWCC	1 cut(s)	241
SmiMI	CAYNNNNRTG	1 cut(s)	285
SpeI	ACTAGT	1 cut(s)	487
Sse9I	AATT	5 cut(s)	37, 50, 185, 433, 557
SsiI	CCGC	1 cut(s)	564
SspDI	GGCGCC	1 cut(s)	44
SspMI	CTAG	3 cut(s)	212, 317, 488
TaaI	ACNGT	5 cut(s)	163, 245, 284, 586, 711
TaqI	TCGA	2 cut(s)	114, 614
TasI	AATT	5 cut(s)	37, 50, 185, 433, 557
TatI	WGTACW	1 cut(s)	463
TfiI	GAWTC	1 cut(s)	621
Tru1I	TTAA	1 cut(s)	746
Tru9I	TTAA	1 cut(s)	746
TscAI	CASTG	2 cut(s)	289, 661
TseI	GCWGC	1 cut(s)	504
TspDTI	ATGAA	4 cut(s)	132, 348, 578, 593
TspGWI	ACGGA	2 cut(s)	38, 167
TspRI	CASTG	2 cut(s)	289, 661
VneI	GTGCAC	1 cut(s)	278
VpaK11BI	GGWCC	1 cut(s)	241
XapI	RAATTY	3 cut(s)	37, 50, 557
XspI	CTAG	3 cut(s)	212, 317, 488

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.