Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_ssc0000019.1

Orthogroup ID

OG0006204

Physical Location & Seq

Genomic Coordinates Reverse (-)

179531 .. 188419

Gene Structure 8889 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_ssc0000019.1_g000035.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1455 bp

atggtacagagtggtttggacacagataaggttgagaattcaggagccaaagtctctcagagtggaagccaagcatcaggtcttcacagggatccctcattctctcgctggtttgatgaagatgggagagtgcaaggtgatttggtaaatgcggatgcgacggtagaagaagaccctgaatttgaattgcctctgccccaacagggagagctagaaaacaagggtttagatatggacagggaccgtatatctccaaggggaagtaagcgcttgaacggtggtgatacctttggtagtgctacagtccagctagatggaaatgatcaagcaaagcttttgccttttgacgttgagaaggggtctgaaagggagctacaggacatagatcactctacttctgttgatgaccacaaggcattatcctctaattcaaagtatcccatttctgctgcaattatactgaaaacattgttctttgtacttgtatggtacacttgcagcctatttttgaccttgtataacaaaagtctgttaggagataatttgggaaagtttcccgctcccttattgatgaatactgttcactttacaatgcaagctattttatcaaaggcaatcacgtggtactggtctcataggttcaaaaccagcgtcactatgtcttggagagattattttgctaaagttgtaccaacggctcttggaacagcaatggatgttaatctaagcaatgcatcccttgtttttatatcggtcacatttgccacaatgtgtaaatccgccgctccaatatttctccttctatttgctttcgctttcaggttggaatctccgagctataaactttcgggaatcatattggttatatccattggaatacttctaacagttgcaaaggagacagaatttgatttctggggattcatttttgtcatgcttgctgctgttatgtctggtttccgatggtgtttgaaaaatccacttactttgatgagctatgtgactccggttatggcagtggtgactgccctgctctcttttatttttgatccctgggatgaacttagaagaaacaattacttcaataatcctgagcatatcagtcgaagttgcttgctgatgctttttggtggaacccttgcctttttcatggtattaacagaattcattcttgtctcagtgaccagtgctgtcactgtcacaatcgcaggtgttgtcaaggaggctctcactatattggttgcagtcatttacttccatgatgaatttactatgttaaaaggagttggactcttcacaattattcttggtgtgagtttattcaactggtacaagtacgaaaaactaaagaagggtcacacaagtgaagacgacatggaggaatcagtcgtgataaataatgctgcaaaatatgttattcttgaagagacagatgagcaagatgatggcacataa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005793 GO:0006810 GO:0006811 GO:0006820 GO:0008150 GO:0015711 GO:0015780 GO:0015786 GO:0015931 GO:0034220 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0051179 GO:0051234 GO:0055085 GO:0071702 GO:0071705 GO:0090481 GO:0098656 GO:1901264

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TPT

Protein Analysis

484

Amino Acids

53.97

Weight (kDa)

4.95

Isoelectric Point (pI)

36.95

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006204)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G06470 AT1G06470 AT1G06470 AT1G06470
fragaria_vesca	FvH4_6g27881 FvH4_6g27890
malus_domestica	MD09G1233800.v1.1 MD17G1230200.v1.1
prunus_persica	Prupe.3G108900_v2.0.a1 Prupe.3G108900_v2.0.a1
pyrus_communis	pycom09g15210 pycom09g15220 pycom17g23310
rosa_chinensis	RchiOBHm_Chr2g0131361
rosa_laevigata	RLG00000019180
rosa_multiflora	Rmu_ssc0000019.1_g000035
rosa_roxburghii	Rroxscaffold_2G00113060 Rroxscaffold_4G00296720 Rroxscaffold_4G00296730 Rroxscaffold_4G00296740
rosa_rugosa	Rorug02G0296000 Rorug02G0296100
rosa_samantha	Rh2AG349300 Rh2BG356300 Rh2CG335200 Rh2DG374200
rosa_wichuraiana	Rw2G028350

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	1199
Acc36I	ACCTGC	1 cut(s)	1199
AccBSI	CCGCTC	2 cut(s)	560, 785
AciI	CCGC	4 cut(s)	152, 558, 780, 783
AclWI	GGATC	3 cut(s)	86, 99, 1043
AcsI	RAATTY	5 cut(s)	37, 179, 905, 1163, 1265
AcvI	CACGTG	1 cut(s)	621
AdeI	CACNNNGTG	1 cut(s)	771
AfaI	GTAC	7 cut(s)	6, 480, 491, 626, 690, 1331, 1337
AfeI	AGCGCT	1 cut(s)	269
AfiI	CCNNNNNNNGG	1 cut(s)	203
AgsI	TTSAA	8 cut(s)	185, 274, 432, 643, 973, 1084, 1324, 1424
AjnI	CCWGG	1 cut(s)	1052
AleI	CACNNNNGTG	1 cut(s)	1362
AluBI	AGCT	7 cut(s)	211, 310, 334, 373, 599, 837, 996
AluI	AGCT	7 cut(s)	211, 310, 334, 373, 599, 837, 996
Alw26I	GTCTC	5 cut(s)	58, 636, 893, 1180, 1421
AlwI	GGATC	3 cut(s)	86, 99, 1043
Aor51HI	AGCGCT	1 cut(s)	269
ApeKI	GCWGC	4 cut(s)	449, 498, 941, 1403
ApoI	RAATTY	5 cut(s)	37, 179, 905, 1163, 1265
ArsI	GACNNNNNNTTYG	4 cut(s)	164, 196, 636, 668
Asp700I	GAANNNNTTC	1 cut(s)	1167
AspLEI	GCGC	1 cut(s)	270
AspS9I	GGNCC	1 cut(s)	241
AsuHPI	GGTGA	3 cut(s)	149, 293, 1033
AvaII	GGWCC	1 cut(s)	241
BamHI	GGATCC	1 cut(s)	91
BbrPI	CACGTG	1 cut(s)	621
BbsI	GAAGAC	3 cut(s)	74, 177, 1374
BbvI	GCAGC	4 cut(s)	436, 510, 928, 1390
BccI	CCATC	4 cut(s)	116, 308, 957, 1439
BceAI	ACGGC	1 cut(s)	711
BcgI	CGANNNNNNTGC	2 cut(s)	1085, 1119
BciT130I	CCWGG	1 cut(s)	1054
BciVI	GTATCC	1 cut(s)	447
BclI	TGATCA	1 cut(s)	322
BcoDI	GTCTC	5 cut(s)	58, 636, 893, 1180, 1421
BfaI	CTAG	2 cut(s)	212, 311
BfmI	CTRYAG	2 cut(s)	300, 374
BfoI	RGCGCY	1 cut(s)	271
BfuAI	ACCTGC	1 cut(s)	1199
BfuI	GTATCC	1 cut(s)	447
BisI	GCNGC	5 cut(s)	450, 499, 783, 942, 1404
BlsI	GCNGC	5 cut(s)	451, 500, 784, 943, 1405
Bme1390I	CCNGG	1 cut(s)	1054
Bme18I	GGWCC	1 cut(s)	241
BmgT120I	GGNCC	1 cut(s)	241
BmiI	GGNNCC	4 cut(s)	46, 93, 242, 1135
BmrFI	CCNGG	1 cut(s)	1054
BmsI	GCATC	4 cut(s)	83, 145, 743, 1110
BpiI	GAAGAC	3 cut(s)	74, 177, 1374
BplI	GAGNNNNNCTC	2 cut(s)	1275, 1307
Bpu10I	CCTNAGC	1 cut(s)	1092
BsaAI	YACGTR	1 cut(s)	621
BsaBI	GATNNNNATC	1 cut(s)	720
BsaI	GGTCTC	1 cut(s)	636
BsaJI	CCNNGG	3 cut(s)	254, 1052, 1053
BsaWI	WCCGGW	1 cut(s)	1006
BsaXI	ACNNNNNCTCC	2 cut(s)	36, 66
Bsc4I	CCNNNNNNNGG	1 cut(s)	203
Bse1I	ACTGG	3 cut(s)	632, 1185, 1331
Bse3DI	GCAATG	2 cut(s)	717, 736
Bse8I	GATNNNNATC	1 cut(s)	720
BseBI	CCWGG	1 cut(s)	1054
BseDI	CCNNGG	3 cut(s)	254, 1052, 1053
BseGI	GGATG	4 cut(s)	160, 721, 734, 1063
BseJI	GATNNNNATC	1 cut(s)	720
BseLI	CCNNNNNNNGG	1 cut(s)	203
BseMI	GCAATG	2 cut(s)	717, 736
BseMII	CTCAG	3 cut(s)	71, 1083, 1191
BseNI	ACTGG	3 cut(s)	632, 1185, 1331
BseXI	GCAGC	4 cut(s)	436, 510, 928, 1390
BsiSI	CCGG	1 cut(s)	1007
BslFI	GGGAC	1 cut(s)	254
BslI	CCNNNNNNNGG	1 cut(s)	203
BsmAI	GTCTC	5 cut(s)	58, 636, 893, 1180, 1421
BsmFI	GGGAC	1 cut(s)	254
Bso31I	GGTCTC	1 cut(s)	636
Bsp143I	GATC	4 cut(s)	91, 322, 385, 1048
BspACI	CCGC	4 cut(s)	152, 558, 780, 783
BspCNI	CTCAG	3 cut(s)	70, 1084, 1190
BspLI	GGNNCC	4 cut(s)	46, 93, 242, 1135
BspMI	ACCTGC	1 cut(s)	1199
BspPI	GGATC	3 cut(s)	86, 99, 1043
BspTNI	GGTCTC	1 cut(s)	636
BsrBI	CCGCTC	2 cut(s)	560, 785
BsrDI	GCAATG	2 cut(s)	717, 736
BsrI	ACTGG	3 cut(s)	632, 1185, 1331
BssECI	CCNNGG	3 cut(s)	254, 1052, 1053
BssMI	GATC	4 cut(s)	91, 322, 385, 1048
BssT1I	CCWWGG	1 cut(s)	254
Bst2UI	CCWGG	1 cut(s)	1054
Bst4CI	ACNGT	7 cut(s)	163, 245, 278, 304, 580, 889, 1198
Bst6I	CTCTTC	2 cut(s)	1298, 1419
BstBAI	YACGTR	1 cut(s)	621
BstC8I	GCNNGC	3 cut(s)	597, 939, 1115
BstDEI	CTNAG	5 cut(s)	57, 725, 1064, 1092, 1177
BstF5I	GGATG	4 cut(s)	160, 721, 734, 1063
BstH2I	RGCGCY	1 cut(s)	271
BstHHI	GCGC	1 cut(s)	270
BstKTI	GATC	4 cut(s)	94, 325, 388, 1051
BstMAI	GTCTC	5 cut(s)	58, 636, 893, 1180, 1421
BstMBI	GATC	4 cut(s)	91, 322, 385, 1048
BstNI	CCWGG	1 cut(s)	1054
BstSCI	CCNGG	1 cut(s)	1052
BstSFI	CTRYAG	2 cut(s)	300, 374
BstV1I	GCAGC	4 cut(s)	436, 510, 928, 1390
BstV2I	GAAGAC	3 cut(s)	74, 177, 1374
BstX2I	RGATCY	1 cut(s)	91
BstXI	CCANNNNNNTGG	1 cut(s)	314
BstYI	RGATCY	1 cut(s)	91
BsuI	GTATCC	1 cut(s)	447
BtsCI	GGATG	4 cut(s)	160, 721, 734, 1063
BtsI	GCAGTG	1 cut(s)	1023
BtsIMutI	CAGTG	4 cut(s)	1023, 1185, 1192, 1194
BveI	ACCTGC	1 cut(s)	1199
Cac8I	GCNNGC	3 cut(s)	597, 939, 1115
CfoI	GCGC	1 cut(s)	270
Cfr13I	GGNCC	1 cut(s)	241
CseI	GACGC	1 cut(s)	640
Csp6I	GTAC	7 cut(s)	5, 479, 490, 625, 689, 1330, 1336
CspCI	CAANNNNNGTGG	2 cut(s)	969, 1004
CviAII	CATG	4 cut(s)	934, 1150, 1259, 1375
CviQI	GTAC	7 cut(s)	5, 479, 490, 625, 689, 1330, 1336
DdeI	CTNAG	5 cut(s)	57, 725, 1064, 1092, 1177
DpnI	GATC	4 cut(s)	93, 324, 387, 1050
DpnII	GATC	4 cut(s)	91, 322, 385, 1048
DraIII	CACNNNGTG	1 cut(s)	771
Eam1104I	CTCTTC	2 cut(s)	1298, 1419
EarI	CTCTTC	2 cut(s)	1298, 1419
EciI	GGCGGA	1 cut(s)	769
Eco130I	CCWWGG	1 cut(s)	254
Eco31I	GGTCTC	1 cut(s)	636
Eco47I	GGWCC	1 cut(s)	241
Eco47III	AGCGCT	1 cut(s)	269
Eco72I	CACGTG	1 cut(s)	621
EcoRI	GAATTC	2 cut(s)	37, 1163
EcoRII	CCWGG	1 cut(s)	1052
EcoT14I	CCWWGG	1 cut(s)	254
EcoT22I	ATGCAT	1 cut(s)	736
ErhI	CCWWGG	1 cut(s)	254
FaeI	CATG	4 cut(s)	937, 1153, 1262, 1378
FalI	AAGNNNNNCTT	2 cut(s)	318, 350
FaqI	GGGAC	1 cut(s)	254
FatI	CATG	4 cut(s)	933, 1149, 1258, 1374
FauI	CCCGC	1 cut(s)	565
FbaI	TGATCA	1 cut(s)	322
Fnu4HI	GCNGC	5 cut(s)	450, 499, 783, 942, 1404
FokI	GGATG	4 cut(s)	167, 721, 728, 1070
Fsp4HI	GCNGC	5 cut(s)	450, 499, 783, 942, 1404
FspBI	CTAG	2 cut(s)	212, 311
GlaI	GCGC	1 cut(s)	269
GluI	GCNGC	5 cut(s)	450, 499, 783, 942, 1404
HaeII	RGCGCY	1 cut(s)	271
HapII	CCGG	1 cut(s)	1007
HgaI	GACGC	1 cut(s)	640
HhaI	GCGC	1 cut(s)	270
Hin1II	CATG	4 cut(s)	937, 1153, 1262, 1378
Hin6I	GCGC	1 cut(s)	268
HinP1I	GCGC	1 cut(s)	268
HindIII	AAGCTT	1 cut(s)	332
HinfI	GANTC	6 cut(s)	827, 852, 921, 1003, 1290, 1382
HpaII	CCGG	1 cut(s)	1007
HphI	GGTGA	3 cut(s)	149, 293, 1033
Hpy166II	GTNNAC	2 cut(s)	492, 583
Hpy188I	TCNGA	4 cut(s)	60, 364, 834, 962
Hpy188III	TCNNGA	5 cut(s)	42, 849, 1091, 1390, 1421
Hpy8I	GTNNAC	2 cut(s)	492, 583
Hpy99I	CGWCG	1 cut(s)	163
HpyAV	CCTTC	3 cut(s)	349, 809, 1345
HpyCH4III	ACNGT	7 cut(s)	163, 245, 278, 304, 580, 889, 1198
HpyCH4IV	ACGT	2 cut(s)	348, 620
HpyCH4V	TGCA	8 cut(s)	133, 452, 498, 595, 734, 893, 1244, 1406
HpyF3I	CTNAG	5 cut(s)	57, 725, 1064, 1092, 1177
HpySE526I	ACGT	2 cut(s)	348, 620
Hsp92II	CATG	4 cut(s)	937, 1153, 1262, 1378
HspAI	GCGC	1 cut(s)	268
Ksp22I	TGATCA	1 cut(s)	322
Kzo9I	GATC	4 cut(s)	91, 322, 385, 1048
LmnI	GCTCC	4 cut(s)	44, 370, 565, 790
Lsp1109I	GCAGC	4 cut(s)	436, 510, 928, 1390
LweI	GCATC	4 cut(s)	83, 145, 743, 1110
MaeI	CTAG	2 cut(s)	212, 311
MaeII	ACGT	2 cut(s)	348, 620
MaeIII	GTNAC	8 cut(s)	652, 754, 1000, 1021, 1180, 1192, 1198, 1355
MalI	GATC	4 cut(s)	93, 324, 387, 1050
MbiI	CCGCTC	2 cut(s)	560, 785
MboI	GATC	4 cut(s)	91, 322, 385, 1048
MboII	GAAGA	8 cut(s)	74, 131, 179, 182, 1080, 1285, 1379, 1436
MflI	RGATCY	1 cut(s)	91
MlyI	GAGTC	2 cut(s)	997, 1284
MmeI	TCCRAC	2 cut(s)	804, 1267
MnlI	CCTC	5 cut(s)	106, 201, 433, 1216, 1372
Mph1103I	ATGCAT	1 cut(s)	736
MroXI	GAANNNNTTC	1 cut(s)	1167
MseI	TTAA	3 cut(s)	720, 1157, 1277
MslI	CAYNNNNRTG	1 cut(s)	1362
MspI	CCGG	1 cut(s)	1007
MspR9I	CCNGG	1 cut(s)	1054
MvaI	CCWGG	1 cut(s)	1054
NdeII	GATC	4 cut(s)	91, 322, 385, 1048
NlaIII	CATG	4 cut(s)	937, 1153, 1262, 1378
NlaIV	GGNNCC	4 cut(s)	46, 93, 242, 1135
NmuCI	GTSAC	8 cut(s)	652, 754, 1000, 1021, 1180, 1192, 1198, 1355
NsiI	ATGCAT	1 cut(s)	736
OliI	CACNNNNGTG	1 cut(s)	1362
PaqCI	CACCTGC	1 cut(s)	1199
PasI	CCCWGGG	1 cut(s)	1053
PdmI	GAANNNNTTC	1 cut(s)	1167
PfeI	GAWTC	4 cut(s)	827, 852, 921, 1382
PkrI	GCNGC	5 cut(s)	451, 500, 784, 943, 1405
PleI	GAGTC	2 cut(s)	997, 1284
PmaCI	CACGTG	1 cut(s)	621
PmlI	CACGTG	1 cut(s)	621
PpsI	GAGTC	2 cut(s)	997, 1284
Ppu21I	YACGTR	1 cut(s)	621
Psp6I	CCWGG	1 cut(s)	1052
PspCI	CACGTG	1 cut(s)	621
PspGI	CCWGG	1 cut(s)	1052
PspN4I	GGNNCC	4 cut(s)	46, 93, 242, 1135
PspPI	GGNCC	1 cut(s)	241
PsuI	RGATCY	1 cut(s)	91
RsaI	GTAC	7 cut(s)	6, 480, 491, 626, 690, 1331, 1337
RsaNI	GTAC	7 cut(s)	5, 479, 490, 625, 689, 1330, 1336
RseI	CAYNNNNRTG	1 cut(s)	1362
SaqAI	TTAA	3 cut(s)	720, 1157, 1277
SatI	GCNGC	5 cut(s)	450, 499, 783, 942, 1404
Sau3AI	GATC	4 cut(s)	91, 322, 385, 1048
Sau96I	GGNCC	1 cut(s)	241
SchI	GAGTC	2 cut(s)	997, 1284
ScrFI	CCNGG	1 cut(s)	1054
SfaNI	GCATC	4 cut(s)	83, 145, 743, 1110
SfcI	CTRYAG	2 cut(s)	300, 374
SinI	GGWCC	1 cut(s)	241
SmiMI	CAYNNNNRTG	1 cut(s)	1362
SsiI	CCGC	4 cut(s)	152, 558, 780, 783
SspI	AATATT	1 cut(s)	792
SspMI	CTAG	2 cut(s)	212, 311
StyD4I	CCNGG	1 cut(s)	1052
StyI	CCWWGG	1 cut(s)	254
TaaI	ACNGT	7 cut(s)	163, 245, 278, 304, 580, 889, 1198
TaiI	ACGT	2 cut(s)	351, 623
TaqI	TCGA	1 cut(s)	1105
TaqII	GACCGA	1 cut(s)	742
TatI	WGTACW	1 cut(s)	478
TauI	GCSGC	1 cut(s)	785
TfiI	GAWTC	4 cut(s)	827, 852, 921, 1382
Tru1I	TTAA	3 cut(s)	720, 1157, 1277
Tru9I	TTAA	3 cut(s)	720, 1157, 1277
TscAI	CASTG	4 cut(s)	1023, 1185, 1192, 1201
TseFI	GTSAC	8 cut(s)	652, 754, 1000, 1021, 1180, 1192, 1198, 1355
TseI	GCWGC	4 cut(s)	449, 498, 941, 1403
Tsp45I	GTSAC	8 cut(s)	652, 754, 1000, 1021, 1180, 1192, 1198, 1355
TspDTI	ATGAA	7 cut(s)	132, 587, 913, 1074, 1138, 1156, 1278
TspRI	CASTG	4 cut(s)	1023, 1185, 1192, 1201
VpaK11BI	GGWCC	1 cut(s)	241
XapI	RAATTY	5 cut(s)	37, 179, 905, 1163, 1265
XmnI	GAANNNNTTC	1 cut(s)	1167
XspI	CTAG	2 cut(s)	212, 311
Zsp2I	ATGCAT	1 cut(s)	736

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.