Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr4

Orthogroup ID

OG0006204

Physical Location & Seq

Genomic Coordinates Reverse (-)

47825218 .. 47834508

Gene Structure 9291 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000019180

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1491 bp

ATGGTACAGAGTGGTTTGGACACAGAAAAGGTTGAGAATTCAGGAGCCAAAGACTCTCAGAGTGGAAGCCAAGCATCAGGTCTTCACAGGGATCCCTCATTCTCTCGCTGGTTTGATGAAGATGGGAGAGTGCAAGGTAATTTGGTAAATACAGATGCGACGGTAGAAGAAGACCCTGAATTTGAATTGCCTCTGCCCCAACAGGGAGAGCTAGAAAACAAGGGTTTAGATATGGACAGGGACCGTATATCTCCAAGGGGAAGCAAGCGCTTGAACAATGGTGATACCTTTGGTAGTGCTACTGTCCAGCTAGATGGAAATGATCAAGCAAAGCTTTTGCCTTTTGACGTTGAGAAGGGGTCTGAAAGGGAGCTACAGGACATAGATCACTCTACTTCTGTTGATAACCACAAGGCATTATCCTCCAATTCAAAGTATCCCATTTCTGCTGCAATTGTGCTGAAAACATTGTTCTTTATACTTGTATGGTACACTTGCAGCCTATTTTTGACCTTGTATAACAAAAGTCTGTTAGGAGATAATTTGGGAAAGTTCCCCGCTCCCTTATTGATGAATACTGTTCACTTTACAATGCAAGCTATTTTATCAAAGGCAATCACGTGGTACTGGTCTCATAGGTTCAAAACCAGTGTCACTATGTCTTGGAGAGATTATTTTGCTAAAGTTGTACCAACGGCTCTTGGAACAGCAATGGATGTTAATCTAAGCAATGCATCCCTTGTTTTTATATCTGTCACATTTGCCACAATGTGTAAATCTGCTGCTCCAATATTTCTCCTTCTATTTGCTTTCGCTTTCAGGTTGGAATCTCTGAGCTATAAACTTTCGGGAATCATATTGGTTATATCCATTGGAATACTACTAACAGTTGCAAAGGAGACAGAATTTGATTTCTGGGGATTCATTTTTGTCATGCTTGCTGCTGTTATGTCTGGTTTCCGATGGTGTATGACTCAAATTCTTCTTCAGAAAGAATCATATGGTTTGAAAAATCCACTTACTTTGATGAGCTATGTGACTCCGGTTATGGCAGTGGTGACTGCCCTGCTCTCTTTTATTTTTGATCCATGGGATGAACTTAGAAGAAACAATTACTTCAATAATCCTGAGCATATCAGTCGAAGTTGCTTGCTGATGCTTTTTGGTGGAACCCTTGCCTTTTTCATGGTATTAACAGAATTCATTCTTGTCTCAGTGACCAGTGCTGTCACTGTCACAATAGCAGGTGTTGTCAAGGAGGCTCTCACTATATTGGTTGCAGTCATTTACTTCCATGATGAATTTACTGTGTTAAAAGGAGTTGGACTCTTCACAATTATTCTTGGTGTGAGTTTATTCAACTGGTACAAGTATGAAAAACTCAAGAAGGGTCACACAAGTGAAGACGACATGGAGGAATCAGTCGTGATGACTAATGCTGCAAAATATGTTATTCTTGAAGAGACAGATGAGCAAGATGATGGCACATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005793 GO:0006810 GO:0006811 GO:0006820 GO:0008150 GO:0015711 GO:0015780 GO:0015786 GO:0015931 GO:0034220 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0051179 GO:0051234 GO:0055085 GO:0071702 GO:0071705 GO:0090481 GO:0098656 GO:1901264

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TPT

Protein Analysis

497

Amino Acids

55.47

Weight (kDa)

5.02

Isoelectric Point (pI)

36.51

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TPT	PF03151	155 - 454	1.4e-27	Triose-phosphate Transporter family
UAA	PF08449	192 - 454	9.8e-08	UAA transporter family
PUNUT	PF16913	215 - 462	3.7e-06	Purine nucleobase transmembrane transport
EamA	PF00892	306 - 454	2.6e-06	EamA-like transporter family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006204)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G06470 AT1G06470 AT1G06470 AT1G06470
fragaria_vesca	FvH4_6g27881 FvH4_6g27890
malus_domestica	MD09G1233800.v1.1 MD17G1230200.v1.1
prunus_persica	Prupe.3G108900_v2.0.a1 Prupe.3G108900_v2.0.a1
pyrus_communis	pycom09g15210 pycom09g15220 pycom17g23310
rosa_chinensis	RchiOBHm_Chr2g0131361
rosa_laevigata	RLG00000019180
rosa_multiflora	Rmu_ssc0000019.1_g000035
rosa_roxburghii	Rroxscaffold_2G00113060 Rroxscaffold_4G00296720 Rroxscaffold_4G00296730 Rroxscaffold_4G00296740
rosa_rugosa	Rorug02G0296000 Rorug02G0296100
rosa_samantha	Rh2AG349300 Rh2BG356300 Rh2CG335200 Rh2DG374200
rosa_wichuraiana	Rw2G028350

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	1235
Acc36I	ACCTGC	1 cut(s)	1235
AccBSI	CCGCTC	1 cut(s)	560
AciI	CCGC	1 cut(s)	558
AclWI	GGATC	3 cut(s)	86, 99, 1079
AcsI	RAATTY	6 cut(s)	37, 179, 905, 978, 1199, 1301
AcuI	CTGAAG	1 cut(s)	971
AcvI	CACGTG	1 cut(s)	621
AdeI	CACNNNGTG	1 cut(s)	771
AfaI	GTAC	5 cut(s)	6, 491, 626, 690, 1367
AfeI	AGCGCT	1 cut(s)	269
AfiI	CCNNNNNNNGG	1 cut(s)	203
AgsI	TTSAA	8 cut(s)	185, 274, 432, 643, 1009, 1120, 1360, 1460
AleI	CACNNNNGTG	1 cut(s)	1398
AluBI	AGCT	7 cut(s)	211, 310, 334, 373, 599, 837, 1032
AluI	AGCT	7 cut(s)	211, 310, 334, 373, 599, 837, 1032
Alw26I	GTCTC	4 cut(s)	636, 893, 1216, 1457
AlwI	GGATC	3 cut(s)	86, 99, 1079
Aor51HI	AGCGCT	1 cut(s)	269
ApeKI	GCWGC	5 cut(s)	449, 498, 782, 941, 1439
ApoI	RAATTY	6 cut(s)	37, 179, 905, 978, 1199, 1301
ArsI	GACNNNNNNTTYG	4 cut(s)	164, 196, 636, 668
Asp700I	GAANNNNTTC	1 cut(s)	1203
AspLEI	GCGC	1 cut(s)	270
AspS9I	GGNCC	1 cut(s)	241
AsuHPI	GGTGA	2 cut(s)	293, 1069
AvaII	GGWCC	1 cut(s)	241
BamHI	GGATCC	1 cut(s)	91
BbrPI	CACGTG	1 cut(s)	621
BbsI	GAAGAC	3 cut(s)	74, 177, 1410
BbvI	GCAGC	5 cut(s)	436, 510, 769, 928, 1426
BccI	CCATC	4 cut(s)	116, 308, 957, 1475
BceAI	ACGGC	1 cut(s)	711
BcgI	CGANNNNNNTGC	2 cut(s)	1121, 1155
BciVI	GTATCC	1 cut(s)	447
BclI	TGATCA	1 cut(s)	322
BcoDI	GTCTC	4 cut(s)	636, 893, 1216, 1457
BfaI	CTAG	2 cut(s)	212, 311
BfmI	CTRYAG	1 cut(s)	374
BfoI	RGCGCY	1 cut(s)	271
BfuAI	ACCTGC	1 cut(s)	1235
BfuI	GTATCC	1 cut(s)	447
BisI	GCNGC	5 cut(s)	450, 499, 783, 942, 1440
BlsI	GCNGC	5 cut(s)	451, 500, 784, 943, 1441
Bme18I	GGWCC	1 cut(s)	241
BmgT120I	GGNCC	1 cut(s)	241
BmiI	GGNNCC	4 cut(s)	46, 93, 242, 1171
BmsI	GCATC	4 cut(s)	83, 145, 743, 1146
BpiI	GAAGAC	3 cut(s)	74, 177, 1410
BplI	GAGNNNNNCTC	2 cut(s)	1311, 1343
Bpu10I	CCTNAGC	1 cut(s)	1128
BpuEI	CTTGAG	1 cut(s)	1367
BsaAI	YACGTR	1 cut(s)	621
BsaBI	GATNNNNATC	1 cut(s)	720
BsaI	GGTCTC	1 cut(s)	636
BsaJI	CCNNGG	2 cut(s)	254, 1088
BsaWI	WCCGGW	1 cut(s)	1042
Bsc4I	CCNNNNNNNGG	1 cut(s)	203
Bse1I	ACTGG	4 cut(s)	632, 648, 1221, 1367
Bse3DI	GCAATG	2 cut(s)	717, 736
Bse8I	GATNNNNATC	1 cut(s)	720
BseDI	CCNNGG	2 cut(s)	254, 1088
BseGI	GGATG	3 cut(s)	721, 734, 1099
BseJI	GATNNNNATC	1 cut(s)	720
BseLI	CCNNNNNNNGG	1 cut(s)	203
BseMI	GCAATG	2 cut(s)	717, 736
BseMII	CTCAG	4 cut(s)	71, 824, 1119, 1227
BseNI	ACTGG	4 cut(s)	632, 648, 1221, 1367
BseXI	GCAGC	5 cut(s)	436, 510, 769, 928, 1426
BsiSI	CCGG	1 cut(s)	1043
BslFI	GGGAC	1 cut(s)	254
BslI	CCNNNNNNNGG	1 cut(s)	203
BsmAI	GTCTC	4 cut(s)	636, 893, 1216, 1457
BsmFI	GGGAC	1 cut(s)	254
Bso31I	GGTCTC	1 cut(s)	636
Bsp143I	GATC	4 cut(s)	91, 322, 385, 1084
Bsp19I	CCATGG	1 cut(s)	1088
BspACI	CCGC	1 cut(s)	558
BspCNI	CTCAG	4 cut(s)	70, 825, 1120, 1226
BspLI	GGNNCC	4 cut(s)	46, 93, 242, 1171
BspMI	ACCTGC	1 cut(s)	1235
BspPI	GGATC	3 cut(s)	86, 99, 1079
BspTNI	GGTCTC	1 cut(s)	636
BsrBI	CCGCTC	1 cut(s)	560
BsrDI	GCAATG	2 cut(s)	717, 736
BsrI	ACTGG	4 cut(s)	632, 648, 1221, 1367
BssECI	CCNNGG	2 cut(s)	254, 1088
BssMI	GATC	4 cut(s)	91, 322, 385, 1084
BssT1I	CCWWGG	2 cut(s)	254, 1088
Bst4CI	ACNGT	7 cut(s)	163, 245, 304, 580, 889, 1234, 1309
Bst6I	CTCTTC	2 cut(s)	1334, 1455
BstBAI	YACGTR	1 cut(s)	621
BstC8I	GCNNGC	4 cut(s)	266, 597, 939, 1151
BstDEI	CTNAG	6 cut(s)	57, 725, 833, 1100, 1128, 1213
BstDSI	CCRYGG	1 cut(s)	1088
BstF5I	GGATG	3 cut(s)	721, 734, 1099
BstH2I	RGCGCY	1 cut(s)	271
BstHHI	GCGC	1 cut(s)	270
BstKTI	GATC	4 cut(s)	94, 325, 388, 1087
BstMAI	GTCTC	4 cut(s)	636, 893, 1216, 1457
BstMBI	GATC	4 cut(s)	91, 322, 385, 1084
BstSFI	CTRYAG	1 cut(s)	374
BstV1I	GCAGC	5 cut(s)	436, 510, 769, 928, 1426
BstV2I	GAAGAC	3 cut(s)	74, 177, 1410
BstX2I	RGATCY	1 cut(s)	91
BstXI	CCANNNNNNTGG	1 cut(s)	314
BstYI	RGATCY	1 cut(s)	91
BsuI	GTATCC	1 cut(s)	447
BtgI	CCRYGG	1 cut(s)	1088
BtsCI	GGATG	3 cut(s)	721, 734, 1099
BtsI	GCAGTG	1 cut(s)	1059
BtsIMutI	CAGTG	5 cut(s)	655, 1059, 1221, 1228, 1230
BveI	ACCTGC	1 cut(s)	1235
Cac8I	GCNNGC	4 cut(s)	266, 597, 939, 1151
CfoI	GCGC	1 cut(s)	270
Cfr13I	GGNCC	1 cut(s)	241
Csp6I	GTAC	5 cut(s)	5, 490, 625, 689, 1366
CspCI	CAANNNNNGTGG	2 cut(s)	1005, 1040
CviAII	CATG	5 cut(s)	934, 1089, 1186, 1295, 1411
CviQI	GTAC	5 cut(s)	5, 490, 625, 689, 1366
DdeI	CTNAG	6 cut(s)	57, 725, 833, 1100, 1128, 1213
DpnI	GATC	4 cut(s)	93, 324, 387, 1086
DpnII	GATC	4 cut(s)	91, 322, 385, 1084
DraIII	CACNNNGTG	1 cut(s)	771
Eam1104I	CTCTTC	2 cut(s)	1334, 1455
EarI	CTCTTC	2 cut(s)	1334, 1455
Eco130I	CCWWGG	2 cut(s)	254, 1088
Eco31I	GGTCTC	1 cut(s)	636
Eco47I	GGWCC	1 cut(s)	241
Eco47III	AGCGCT	1 cut(s)	269
Eco57I	CTGAAG	1 cut(s)	971
Eco72I	CACGTG	1 cut(s)	621
EcoRI	GAATTC	2 cut(s)	37, 1199
EcoT14I	CCWWGG	2 cut(s)	254, 1088
EcoT22I	ATGCAT	1 cut(s)	736
ErhI	CCWWGG	2 cut(s)	254, 1088
FaeI	CATG	5 cut(s)	937, 1092, 1189, 1298, 1414
FalI	AAGNNNNNCTT	2 cut(s)	318, 350
FaqI	GGGAC	1 cut(s)	254
FatI	CATG	5 cut(s)	933, 1088, 1185, 1294, 1410
FauI	CCCGC	1 cut(s)	565
FauNDI	CATATG	1 cut(s)	1000
FbaI	TGATCA	1 cut(s)	322
Fnu4HI	GCNGC	5 cut(s)	450, 499, 783, 942, 1440
FokI	GGATG	3 cut(s)	721, 728, 1106
Fsp4HI	GCNGC	5 cut(s)	450, 499, 783, 942, 1440
FspBI	CTAG	2 cut(s)	212, 311
GlaI	GCGC	1 cut(s)	269
GluI	GCNGC	5 cut(s)	450, 499, 783, 942, 1440
HaeII	RGCGCY	1 cut(s)	271
HapII	CCGG	1 cut(s)	1043
HhaI	GCGC	1 cut(s)	270
Hin1II	CATG	5 cut(s)	937, 1092, 1189, 1298, 1414
Hin6I	GCGC	1 cut(s)	268
HinP1I	GCGC	1 cut(s)	268
HindIII	AAGCTT	1 cut(s)	332
HinfI	GANTC	9 cut(s)	53, 827, 852, 921, 973, 995, 1039, 1326, 1418
HpaII	CCGG	1 cut(s)	1043
HphI	GGTGA	2 cut(s)	293, 1069
Hpy166II	GTNNAC	2 cut(s)	492, 583
Hpy188I	TCNGA	5 cut(s)	60, 364, 834, 962, 990
Hpy188III	TCNNGA	6 cut(s)	42, 849, 1127, 1384, 1426, 1457
Hpy8I	GTNNAC	2 cut(s)	492, 583
Hpy99I	CGWCG	1 cut(s)	163
HpyAV	CCTTC	3 cut(s)	349, 809, 1381
HpyCH4III	ACNGT	7 cut(s)	163, 245, 304, 580, 889, 1234, 1309
HpyCH4IV	ACGT	2 cut(s)	348, 620
HpyCH4V	TGCA	8 cut(s)	133, 452, 498, 595, 734, 893, 1280, 1442
HpyF3I	CTNAG	6 cut(s)	57, 725, 833, 1100, 1128, 1213
HpySE526I	ACGT	2 cut(s)	348, 620
Hsp92II	CATG	5 cut(s)	937, 1092, 1189, 1298, 1414
HspAI	GCGC	1 cut(s)	268
Ksp22I	TGATCA	1 cut(s)	322
Kzo9I	GATC	4 cut(s)	91, 322, 385, 1084
LmnI	GCTCC	4 cut(s)	44, 370, 565, 790
Lsp1109I	GCAGC	5 cut(s)	436, 510, 769, 928, 1426
LweI	GCATC	4 cut(s)	83, 145, 743, 1146
MaeI	CTAG	2 cut(s)	212, 311
MaeII	ACGT	2 cut(s)	348, 620
MaeIII	GTNAC	8 cut(s)	652, 754, 1036, 1057, 1216, 1228, 1234, 1391
MalI	GATC	4 cut(s)	93, 324, 387, 1086
MbiI	CCGCTC	1 cut(s)	560
MboI	GATC	4 cut(s)	91, 322, 385, 1084
MfeI	CAATTG	1 cut(s)	453
MflI	RGATCY	1 cut(s)	91
MlyI	GAGTC	4 cut(s)	47, 967, 1033, 1320
MmeI	TCCRAC	2 cut(s)	804, 1303
MnlI	CCTC	5 cut(s)	106, 201, 433, 1252, 1408
Mph1103I	ATGCAT	1 cut(s)	736
MroXI	GAANNNNTTC	1 cut(s)	1203
MseI	TTAA	3 cut(s)	720, 1193, 1313
MslI	CAYNNNNRTG	1 cut(s)	1398
MspI	CCGG	1 cut(s)	1043
MunI	CAATTG	1 cut(s)	453
NcoI	CCATGG	1 cut(s)	1088
NdeI	CATATG	1 cut(s)	1000
NdeII	GATC	4 cut(s)	91, 322, 385, 1084
NlaIII	CATG	5 cut(s)	937, 1092, 1189, 1298, 1414
NlaIV	GGNNCC	4 cut(s)	46, 93, 242, 1171
NmuCI	GTSAC	8 cut(s)	652, 754, 1036, 1057, 1216, 1228, 1234, 1391
NsiI	ATGCAT	1 cut(s)	736
OliI	CACNNNNGTG	1 cut(s)	1398
PaqCI	CACCTGC	1 cut(s)	1235
PdmI	GAANNNNTTC	1 cut(s)	1203
PfeI	GAWTC	5 cut(s)	827, 852, 921, 995, 1418
PkrI	GCNGC	5 cut(s)	451, 500, 784, 943, 1441
PleI	GAGTC	4 cut(s)	47, 967, 1033, 1320
PmaCI	CACGTG	1 cut(s)	621
PmlI	CACGTG	1 cut(s)	621
PpsI	GAGTC	4 cut(s)	47, 967, 1033, 1320
Ppu21I	YACGTR	1 cut(s)	621
PspCI	CACGTG	1 cut(s)	621
PspN4I	GGNNCC	4 cut(s)	46, 93, 242, 1171
PspPI	GGNCC	1 cut(s)	241
PsuI	RGATCY	1 cut(s)	91
RsaI	GTAC	5 cut(s)	6, 491, 626, 690, 1367
RsaNI	GTAC	5 cut(s)	5, 490, 625, 689, 1366
RseI	CAYNNNNRTG	1 cut(s)	1398
SaqAI	TTAA	3 cut(s)	720, 1193, 1313
SatI	GCNGC	5 cut(s)	450, 499, 783, 942, 1440
Sau3AI	GATC	4 cut(s)	91, 322, 385, 1084
Sau96I	GGNCC	1 cut(s)	241
SchI	GAGTC	4 cut(s)	47, 967, 1033, 1320
SfaNI	GCATC	4 cut(s)	83, 145, 743, 1146
SfcI	CTRYAG	1 cut(s)	374
SinI	GGWCC	1 cut(s)	241
SmiMI	CAYNNNNRTG	1 cut(s)	1398
SmlI	CTYRAG	1 cut(s)	1382
SmoI	CTYRAG	1 cut(s)	1382
SsiI	CCGC	1 cut(s)	558
SspI	AATATT	1 cut(s)	792
SspMI	CTAG	2 cut(s)	212, 311
StyI	CCWWGG	2 cut(s)	254, 1088
TaaI	ACNGT	7 cut(s)	163, 245, 304, 580, 889, 1234, 1309
TaiI	ACGT	2 cut(s)	351, 623
TaqI	TCGA	1 cut(s)	1141
TfiI	GAWTC	5 cut(s)	827, 852, 921, 995, 1418
Tru1I	TTAA	3 cut(s)	720, 1193, 1313
Tru9I	TTAA	3 cut(s)	720, 1193, 1313
TscAI	CASTG	5 cut(s)	655, 1059, 1221, 1228, 1237
TseFI	GTSAC	8 cut(s)	652, 754, 1036, 1057, 1216, 1228, 1234, 1391
TseI	GCWGC	5 cut(s)	449, 498, 782, 941, 1439
Tsp45I	GTSAC	8 cut(s)	652, 754, 1036, 1057, 1216, 1228, 1234, 1391
TspDTI	ATGAA	8 cut(s)	132, 587, 913, 1110, 1174, 1192, 1314, 1389
TspRI	CASTG	5 cut(s)	655, 1059, 1221, 1228, 1237
VpaK11BI	GGWCC	1 cut(s)	241
XapI	RAATTY	6 cut(s)	37, 179, 905, 978, 1199, 1301
XmnI	GAANNNNTTC	1 cut(s)	1203
XspI	CTAG	2 cut(s)	212, 311
Zsp2I	ATGCAT	1 cut(s)	736

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.