Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0006204

Physical Location & Seq

Genomic Coordinates Forward (+)

32835002 .. 32835322

Gene Structure 321 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0296100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 321 bp

ATGGCGTCCATTGAGGATGTCACTGCCTCCTTTGCGGCATCTCTTGCTTTAGCCAGCAATGAAGTTATCGATCTGTCTCGTCGAACTGGGGGTGCACAACGCCGTCCTCGACAATCCTACCTACTGGCCAAACCCTTGGCAAAGCAATCTGCTGCCTTCAACGACATCAGGCGATTCTTCAGACGAGTATGGGTGCTCGATAAAGGATTTAAGATCCAAGAGAGAGAGCAGAACCATTTTGTGCTAGCTTTTGACCTCCAACGTGATCGAAACAAGGTGTTGGTGGTGGTCTATGGCGCTTTAACCATGCCCCGATTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005793 GO:0006810 GO:0006811 GO:0006820 GO:0008150 GO:0015711 GO:0015780 GO:0015786 GO:0015931 GO:0034220 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0051179 GO:0051234 GO:0055085 GO:0071702 GO:0071705 GO:0090481 GO:0098656 GO:1901264

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TPT

Protein Analysis

106

Amino Acids

12.12

Weight (kDa)

10.85

Isoelectric Point (pI)

57.24

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DUF4283	PF14111	39 - 94	1.8e-08	Domain of unknown function (DUF4283)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006204)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G06470 AT1G06470 AT1G06470 AT1G06470
fragaria_vesca	FvH4_6g27881 FvH4_6g27890
malus_domestica	MD09G1233800.v1.1 MD17G1230200.v1.1
prunus_persica	Prupe.3G108900_v2.0.a1 Prupe.3G108900_v2.0.a1
pyrus_communis	pycom09g15210 pycom09g15220 pycom17g23310
rosa_chinensis	RchiOBHm_Chr2g0131361
rosa_laevigata	RLG00000019180
rosa_multiflora	Rmu_ssc0000019.1_g000035
rosa_roxburghii	Rroxscaffold_2G00113060 Rroxscaffold_4G00296720 Rroxscaffold_4G00296730 Rroxscaffold_4G00296740
rosa_rugosa	Rorug02G0296000 Rorug02G0296100
rosa_samantha	Rh2AG349300 Rh2BG356300 Rh2CG335200 Rh2DG374200
rosa_wichuraiana	Rw2G028350

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	35
AclWI	GGATC	1 cut(s)	208
AcoI	YGGCCR	1 cut(s)	126
AcuI	CTGAAG	1 cut(s)	163
AcyI	GRCGYC	1 cut(s)	5
AgsI	TTSAA	1 cut(s)	160
AluBI	AGCT	1 cut(s)	248
AluI	AGCT	1 cut(s)	248
Alw21I	GWGCWC	2 cut(s)	97, 198
Alw26I	GTCTC	1 cut(s)	81
Alw44I	GTGCAC	1 cut(s)	93
AlwI	GGATC	1 cut(s)	208
AoxI	GGCC	1 cut(s)	126
ApaLI	GTGCAC	1 cut(s)	93
ApeKI	GCWGC	1 cut(s)	152
AspLEI	GCGC	1 cut(s)	299
AsuNHI	GCTAGC	1 cut(s)	244
BaeGI	GKGCMC	1 cut(s)	97
BalI	TGGCCA	1 cut(s)	128
Bbv12I	GWGCWC	2 cut(s)	97, 198
BbvI	GCAGC	1 cut(s)	139
BceAI	ACGGC	1 cut(s)	87
BcoDI	GTCTC	1 cut(s)	81
BfaI	CTAG	1 cut(s)	245
BfoI	RGCGCY	1 cut(s)	300
BisI	GCNGC	2 cut(s)	36, 153
BlsI	GCNGC	2 cut(s)	37, 154
BmrI	ACTGGG	1 cut(s)	96
BmsI	GCATC	1 cut(s)	47
BmtI	GCTAGC	1 cut(s)	248
BmuI	ACTGGG	1 cut(s)	96
Bsa29I	ATCGAT	1 cut(s)	69
BsaHI	GRCGYC	1 cut(s)	5
BsaJI	CCNNGG	1 cut(s)	135
Bse1I	ACTGG	2 cut(s)	91, 129
Bse3DI	GCAATG	1 cut(s)	64
BseCI	ATCGAT	1 cut(s)	69
BseDI	CCNNGG	1 cut(s)	135
BseGI	GGATG	1 cut(s)	22
BseMI	GCAATG	1 cut(s)	64
BseNI	ACTGG	2 cut(s)	91, 129
BseSI	GKGCMC	1 cut(s)	97
BseXI	GCAGC	1 cut(s)	139
BshFI	GGCC	1 cut(s)	128
BshVI	ATCGAT	1 cut(s)	69
BsiHKAI	GWGCWC	2 cut(s)	97, 198
BsmAI	GTCTC	1 cut(s)	81
BsnI	GGCC	1 cut(s)	128
Bsp1286I	GDGCHC	2 cut(s)	97, 198
Bsp143I	GATC	3 cut(s)	70, 213, 265
BspACI	CCGC	1 cut(s)	35
BspANI	GGCC	1 cut(s)	128
BspDI	ATCGAT	1 cut(s)	69
BspOI	GCTAGC	1 cut(s)	248
BspPI	GGATC	1 cut(s)	208
BsrDI	GCAATG	1 cut(s)	64
BsrI	ACTGG	2 cut(s)	91, 129
BssECI	CCNNGG	1 cut(s)	135
BssMI	GATC	3 cut(s)	70, 213, 265
BssNI	GRCGYC	1 cut(s)	5
BssT1I	CCWWGG	1 cut(s)	135
BstACI	GRCGYC	1 cut(s)	5
BstAPI	GCANNNNNTGC	1 cut(s)	44
BstC8I	GCNNGC	2 cut(s)	55, 246
BstF5I	GGATG	1 cut(s)	22
BstH2I	RGCGCY	1 cut(s)	300
BstHHI	GCGC	1 cut(s)	299
BstKTI	GATC	3 cut(s)	73, 216, 268
BstMAI	GTCTC	1 cut(s)	81
BstMBI	GATC	3 cut(s)	70, 213, 265
BstMWI	GCNNNNNNNGC	2 cut(s)	32, 44
BstSLI	GKGCMC	1 cut(s)	97
BstV1I	GCAGC	1 cut(s)	139
BstX2I	RGATCY	1 cut(s)	213
BstXI	CCANNNNNNTGG	1 cut(s)	136
BstYI	RGATCY	1 cut(s)	213
Bsu15I	ATCGAT	1 cut(s)	69
BsuRI	GGCC	1 cut(s)	128
BsuTUI	ATCGAT	1 cut(s)	69
BtsCI	GGATG	1 cut(s)	22
BtsI	GCAGTG	1 cut(s)	21
BtsIMutI	CAGTG	1 cut(s)	21
Cac8I	GCNNGC	2 cut(s)	55, 246
CfoI	GCGC	1 cut(s)	299
ClaI	ATCGAT	1 cut(s)	69
CviAII	CATG	1 cut(s)	307
CviJI	RGCY	3 cut(s)	53, 128, 248
CviKI_1	RGCY	3 cut(s)	53, 128, 248
DpnI	GATC	3 cut(s)	72, 215, 267
DpnII	GATC	3 cut(s)	70, 213, 265
EaeI	YGGCCR	1 cut(s)	126
Eco130I	CCWWGG	1 cut(s)	135
Eco57I	CTGAAG	1 cut(s)	163
EcoT14I	CCWWGG	1 cut(s)	135
ErhI	CCWWGG	1 cut(s)	135
FaeI	CATG	1 cut(s)	310
FaiI	YATR	3 cut(s)	190, 294, 308
FatI	CATG	1 cut(s)	306
Fnu4HI	GCNGC	2 cut(s)	36, 153
FokI	GGATG	1 cut(s)	29
Fsp4HI	GCNGC	2 cut(s)	36, 153
FspBI	CTAG	1 cut(s)	245
GlaI	GCGC	1 cut(s)	298
GluI	GCNGC	2 cut(s)	36, 153
HaeII	RGCGCY	1 cut(s)	300
HaeIII	GGCC	1 cut(s)	128
HhaI	GCGC	1 cut(s)	299
Hin1I	GRCGYC	1 cut(s)	5
Hin1II	CATG	1 cut(s)	310
Hin6I	GCGC	1 cut(s)	297
HinP1I	GCGC	1 cut(s)	297
HinfI	GANTC	1 cut(s)	174
Hpy166II	GTNNAC	1 cut(s)	95
Hpy188I	TCNGA	1 cut(s)	182
Hpy8I	GTNNAC	1 cut(s)	95
Hpy99I	CGWCG	1 cut(s)	84
HpyAV	CCTTC	1 cut(s)	166
HpyCH4IV	ACGT	1 cut(s)	262
HpyCH4V	TGCA	1 cut(s)	95
HpyF10VI	GCNNNNNNNGC	2 cut(s)	32, 44
HpySE526I	ACGT	1 cut(s)	262
Hsp92I	GRCGYC	1 cut(s)	5
Hsp92II	CATG	1 cut(s)	310
HspAI	GCGC	1 cut(s)	297
Kzo9I	GATC	3 cut(s)	70, 213, 265
LpnPI	CCDG	4 cut(s)	67, 72, 110, 154
Lsp1109I	GCAGC	1 cut(s)	139
LweI	GCATC	1 cut(s)	47
MaeI	CTAG	1 cut(s)	245
MaeII	ACGT	1 cut(s)	262
MaeIII	GTNAC	1 cut(s)	19
MalI	GATC	3 cut(s)	72, 215, 267
MboI	GATC	3 cut(s)	70, 213, 265
MboII	GAAGA	1 cut(s)	169
MflI	RGATCY	1 cut(s)	213
MhlI	GDGCHC	2 cut(s)	97, 198
MlsI	TGGCCA	1 cut(s)	128
MluNI	TGGCCA	1 cut(s)	128
MmeI	TCCRAC	1 cut(s)	283
MnlI	CCTC	4 cut(s)	7, 37, 117, 266
Mox20I	TGGCCA	1 cut(s)	128
MscI	TGGCCA	1 cut(s)	128
MseI	TTAA	2 cut(s)	210, 302
Msp20I	TGGCCA	1 cut(s)	128
MwoI	GCNNNNNNNGC	2 cut(s)	32, 44
NdeII	GATC	3 cut(s)	70, 213, 265
NheI	GCTAGC	1 cut(s)	244
NlaIII	CATG	1 cut(s)	310
NmuCI	GTSAC	1 cut(s)	19
PcsI	WCGNNNNNNNCGW	1 cut(s)	106
PfeI	GAWTC	1 cut(s)	174
PkrI	GCNGC	2 cut(s)	37, 154
PsuI	RGATCY	1 cut(s)	213
SaqAI	TTAA	2 cut(s)	210, 302
SatI	GCNGC	2 cut(s)	36, 153
Sau3AI	GATC	3 cut(s)	70, 213, 265
SduI	GDGCHC	2 cut(s)	97, 198
SetI	ASST	5 cut(s)	123, 250, 258, 265, 279
SfaNI	GCATC	1 cut(s)	47
SsiI	CCGC	1 cut(s)	35
SspMI	CTAG	1 cut(s)	245
StyI	CCWWGG	1 cut(s)	135
TaiI	ACGT	1 cut(s)	265
TaqI	TCGA	5 cut(s)	69, 82, 109, 198, 268
TauI	GCSGC	1 cut(s)	38
TfiI	GAWTC	1 cut(s)	174
Tru1I	TTAA	2 cut(s)	210, 302
Tru9I	TTAA	2 cut(s)	210, 302
TscAI	CASTG	1 cut(s)	28
TseFI	GTSAC	1 cut(s)	19
TseI	GCWGC	1 cut(s)	152
Tsp45I	GTSAC	1 cut(s)	19
TspDTI	ATGAA	1 cut(s)	75
TspRI	CASTG	1 cut(s)	28
VneI	GTGCAC	1 cut(s)	93
XspI	CTAG	1 cut(s)	245

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.