Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr17

Orthogroup ID

OG0006204

Physical Location & Seq

Genomic Coordinates Forward (+)

27820911 .. 27834939

Gene Structure 14029 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD17G1230200.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1491 bp

ATGGTAGAGAGTGATTTGACCACAGAAAGGGTTGAGTACACGGAAGCCAACTACGCTCAGAGTGGGACCCAAGTGTCAGGTCTTCGCAGGGAGCCCTCATTCTCTCGCTGGTGCGATGAAGATGGGACAGTGCATTTTGATCGTCTGGATGCTACTGCAGAAGAAGAGTCTGACTTTGAATTGCCCAAGCTCCAACAGGGTGAGCTAGAAAACAGTATTTTAGATAAGGACAGATACCTCAGTACAAAATCTCAGAAGAGAAATATGCACTTGAACGGTGGTGATACCATGGATGATGCTTCTAACCAGGTTGGTGGGAATGGAAACGAGGAGTATCTGCCCTTTGATATCGAGAATGGGTCTGCAAGGGAGGTACAGGGTGTAGATAGCTCCAATTCTATGCATAACCATAAAGCATTACCGTCCAATTCAGAGAACCCTATAACTCTTCCAAATGTGTTGAAGACATTGTTCTTTGTACTTGTATGGTACACTTTCAGCCTGATGTTGACCTTGTACAATAAAAGTCTGTTAGGAGATCATTTGGGGAAGTTTCCTGCTCCCTTTATGATGAATACAGTTCATTTCACAATGCAAGCTGTTTTGTCGAAGGCAATCACATGGTATTGGTCTAATAGATTCCAAACTGGTGTTGTTATGTCATGGAGAGATTACTTGGTGAAAGTTGTACCCACGGCTATTGGAACAGCAATGGATGTTAATCTAAGCAACGCATCCCTTGTTTTTATATCTGTCACGTTTGCCACAATGTGCAAATCCGCTGCTCCTATATTTCTCCTCCTATTTGCTTTTGCTTTCAGATTGGAGTCACCAAGCGTTAGACTTTCGGGGATCATATTAATTATCTCACTCGGAATACTATTAACAGTTGCAAAAGAGACAGAATTTGACTTTTGGGGATTCATTTTTGTCATGCTTGCTGCTGTAATGTCCGGCTTCCGTTGGTGCATGACTCAAATTCTTTTGCAGAAAGAAGATTTTGGTTTGAGAAATCCGCTTACTTTGATGAGCTTTGTGACCCCAGTGATGGCAGTATTAACTGCCATTCTCTCTCTTGTCTTTGATCCGTGGGATGAACTTAGAGAAAACAATTACTTCGACAATCCAGGGCATATCGGTCGAAGTTTGTTGCTGATGCTTTTTGGTGGAACACTTGCCTTTTTTATGGTATTAACAGAATTCATTCTTGTCTCGGTAACCAGTGCTGTCACAGTAACAATAGCAGGTGTTGTTAAGGAGGCTCTCACTATATTGGTTGCAGTCATTTACTTCCACGATGAATTTACCAGGTTGAAAGGAGCTGGACTCTTTATAATTATTCTTGGTGTTAGTTTATTCAACTGGTACAAATACGATAAGCTTAAGGCACGTCATACAAGGGAAGATGACATGGAGGAACCAGTCACGACAAATAATGCTGCAAAATATGTTATTCTTGAGGAAATGGATGAGCAAGATGATGGCAGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005793 GO:0006810 GO:0006811 GO:0006820 GO:0008150 GO:0015711 GO:0015780 GO:0015786 GO:0015931 GO:0034220 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0051179 GO:0051234 GO:0055085 GO:0071702 GO:0071705 GO:0090481 GO:0098656 GO:1901264

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TPT

Protein Analysis

497

Amino Acids

55.9

Weight (kDa)

4.87

Isoelectric Point (pI)

42.9

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TPT	PF03151	155 - 454	6e-28	Triose-phosphate Transporter family
UAA	PF08449	201 - 454	1.8e-08	UAA transporter family
EamA	PF00892	306 - 454	3.7e-07	EamA-like transporter family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006204)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G06470 AT1G06470 AT1G06470 AT1G06470
fragaria_vesca	FvH4_6g27881 FvH4_6g27890
malus_domestica	MD09G1233800.v1.1 MD17G1230200.v1.1
prunus_persica	Prupe.3G108900_v2.0.a1 Prupe.3G108900_v2.0.a1
pyrus_communis	pycom09g15210 pycom09g15220 pycom17g23310
rosa_chinensis	RchiOBHm_Chr2g0131361
rosa_laevigata	RLG00000019180
rosa_multiflora	Rmu_ssc0000019.1_g000035
rosa_roxburghii	Rroxscaffold_2G00113060 Rroxscaffold_4G00296720 Rroxscaffold_4G00296730 Rroxscaffold_4G00296740
rosa_rugosa	Rorug02G0296000 Rorug02G0296100
rosa_samantha	Rh2AG349300 Rh2BG356300 Rh2CG335200 Rh2DG374200
rosa_wichuraiana	Rw2G028350

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1334
AarI	CACCTGC	1 cut(s)	1235
AasI	GACNNNNNNGTC	1 cut(s)	73
Acc36I	ACCTGC	1 cut(s)	1235
AciI	CCGC	2 cut(s)	780, 1016
AclWI	GGATC	2 cut(s)	860, 1079
AcsI	RAATTY	4 cut(s)	905, 978, 1199, 1301
AdeI	CACNNNGTG	1 cut(s)	771
AfaI	GTAC	8 cut(s)	38, 244, 375, 480, 491, 518, 690, 1367
AfiI	CCNNNNNNNGG	2 cut(s)	27, 1048
AflII	CTTAAG	1 cut(s)	1382
AgsI	TTSAA	5 cut(s)	179, 274, 463, 1315, 1360
AjiI	CACGTC	1 cut(s)	1391
AjnI	CCWGG	3 cut(s)	306, 1126, 1307
AluBI	AGCT	7 cut(s)	190, 205, 390, 599, 1032, 1322, 1381
AluI	AGCT	7 cut(s)	190, 205, 390, 599, 1032, 1322, 1381
Alw26I	GTCTC	2 cut(s)	893, 1216
AlwI	GGATC	2 cut(s)	860, 1079
ApeKI	GCWGC	3 cut(s)	782, 941, 1439
ApoI	RAATTY	4 cut(s)	905, 978, 1199, 1301
AseI	ATTAAT	1 cut(s)	860
Asp700I	GAANNNNTTC	1 cut(s)	1203
AspS9I	GGNCC	1 cut(s)	66
AsuHPI	GGTGA	4 cut(s)	212, 293, 691, 822
AvaII	GGWCC	1 cut(s)	66
BaeI	ACNNNNGTAYC	2 cut(s)	226, 259
BanII	GRGCYC	1 cut(s)	96
BbsI	GAAGAC	2 cut(s)	74, 470
BbvI	GCAGC	3 cut(s)	769, 928, 1426
BccI	CCATC	3 cut(s)	116, 1042, 1475
BceAI	ACGGC	1 cut(s)	711
BcgI	CGANNNNNNTGC	4 cut(s)	122, 156, 1121, 1155
BciT130I	CCWGG	3 cut(s)	308, 1128, 1309
BcoDI	GTCTC	2 cut(s)	893, 1216
BfaI	CTAG	1 cut(s)	206
BfmI	CTRYAG	1 cut(s)	156
BfrI	CTTAAG	1 cut(s)	1382
BfuAI	ACCTGC	1 cut(s)	1235
BisI	GCNGC	3 cut(s)	783, 942, 1440
BlsI	GCNGC	3 cut(s)	784, 943, 1441
Bme1390I	CCNGG	3 cut(s)	308, 1128, 1309
Bme18I	GGWCC	1 cut(s)	66
BmgBI	CACGTC	1 cut(s)	1391
BmgT120I	GGNCC	1 cut(s)	66
BmiI	GGNNCC	4 cut(s)	67, 68, 93, 1419
BmrFI	CCNGG	3 cut(s)	308, 1128, 1309
BmrI	ACTGGG	1 cut(s)	1037
BmsI	GCATC	4 cut(s)	139, 286, 743, 1146
BmuI	ACTGGG	1 cut(s)	1037
BpiI	GAAGAC	2 cut(s)	74, 470
BplI	GAGNNNNNCTC	2 cut(s)	1311, 1343
BpuEI	CTTGAG	1 cut(s)	1478
BsaBI	GATNNNNATC	1 cut(s)	720
BsaJI	CCNNGG	4 cut(s)	288, 693, 1088, 1127
Bsc4I	CCNNNNNNNGG	2 cut(s)	27, 1048
Bse1I	ACTGG	5 cut(s)	652, 1043, 1221, 1367, 1421
Bse3DI	GCAATG	1 cut(s)	717
Bse8I	GATNNNNATC	1 cut(s)	720
BseBI	CCWGG	3 cut(s)	308, 1128, 1309
BseDI	CCNNGG	4 cut(s)	288, 693, 1088, 1127
BseGI	GGATG	6 cut(s)	154, 298, 721, 734, 1099, 1474
BseJI	GATNNNNATC	1 cut(s)	720
BseLI	CCNNNNNNNGG	2 cut(s)	27, 1048
BseMI	GCAATG	1 cut(s)	717
BseMII	CTCAG	3 cut(s)	71, 253, 266
BseNI	ACTGG	5 cut(s)	652, 1043, 1221, 1367, 1421
BseRI	GAGGAG	2 cut(s)	344, 788
BseXI	GCAGC	3 cut(s)	769, 928, 1426
Bsh1285I	CGRYCG	1 cut(s)	1141
BsiEI	CGRYCG	1 cut(s)	1141
BsiSI	CCGG	1 cut(s)	954
BslFI	GGGAC	2 cut(s)	79, 139
BslI	CCNNNNNNNGG	2 cut(s)	27, 1048
BsmAI	GTCTC	2 cut(s)	893, 1216
BsmFI	GGGAC	2 cut(s)	79, 139
Bsp1286I	GDGCHC	1 cut(s)	96
Bsp1407I	TGTACA	1 cut(s)	516
Bsp143I	GATC	4 cut(s)	139, 538, 852, 1084
Bsp19I	CCATGG	1 cut(s)	288
BspACI	CCGC	2 cut(s)	780, 1016
BspCNI	CTCAG	3 cut(s)	70, 252, 265
BspLI	GGNNCC	4 cut(s)	67, 68, 93, 1419
BspMAI	CTGCAG	1 cut(s)	160
BspMI	ACCTGC	1 cut(s)	1235
BspPI	GGATC	2 cut(s)	860, 1079
BspTI	CTTAAG	1 cut(s)	1382
BsrDI	GCAATG	1 cut(s)	717
BsrGI	TGTACA	1 cut(s)	516
BsrI	ACTGG	5 cut(s)	652, 1043, 1221, 1367, 1421
BssECI	CCNNGG	4 cut(s)	288, 693, 1088, 1127
BssMI	GATC	4 cut(s)	139, 538, 852, 1084
BssT1I	CCWWGG	1 cut(s)	288
Bst2UI	CCWGG	3 cut(s)	308, 1128, 1309
Bst4CI	ACNGT	7 cut(s)	130, 215, 278, 423, 580, 889, 1234
Bst6I	CTCTTC	3 cut(s)	159, 251, 453
BstAFI	CTTAAG	1 cut(s)	1382
BstAUI	TGTACA	1 cut(s)	516
BstC8I	GCNNGC	2 cut(s)	597, 939
BstDEI	CTNAG	5 cut(s)	57, 239, 252, 725, 1100
BstDSI	CCRYGG	3 cut(s)	288, 693, 1088
BstEII	GGTNACC	1 cut(s)	1216
BstF5I	GGATG	6 cut(s)	154, 298, 721, 734, 1099, 1474
BstKTI	GATC	4 cut(s)	142, 541, 855, 1087
BstMAI	GTCTC	2 cut(s)	893, 1216
BstMBI	GATC	4 cut(s)	139, 538, 852, 1084
BstMCI	CGRYCG	1 cut(s)	1141
BstMWI	GCNNNNNNNGC	1 cut(s)	53
BstNI	CCWGG	3 cut(s)	308, 1128, 1309
BstPI	GGTNACC	1 cut(s)	1216
BstSCI	CCNGG	3 cut(s)	306, 1126, 1307
BstSFI	CTRYAG	1 cut(s)	156
BstV1I	GCAGC	3 cut(s)	769, 928, 1426
BstV2I	GAAGAC	2 cut(s)	74, 470
BstXI	CCANNNNNNTGG	1 cut(s)	314
BtgI	CCRYGG	3 cut(s)	288, 693, 1088
BtgZI	GCGATG	1 cut(s)	129
BtrI	CACGTC	1 cut(s)	1391
BtsCI	GGATG	6 cut(s)	154, 298, 721, 734, 1099, 1474
BtsIMutI	CAGTG	3 cut(s)	135, 1050, 1228
BveI	ACCTGC	1 cut(s)	1235
Cac8I	GCNNGC	2 cut(s)	597, 939
Cfr13I	GGNCC	1 cut(s)	66
CsiI	ACCWGGT	2 cut(s)	306, 1307
Csp6I	GTAC	8 cut(s)	37, 243, 374, 479, 490, 517, 689, 1366
CspCI	CAANNNNNGTGG	2 cut(s)	682, 717
CviAII	CATG	6 cut(s)	289, 621, 663, 934, 970, 1411
CviQI	GTAC	8 cut(s)	37, 243, 374, 479, 490, 517, 689, 1366
DdeI	CTNAG	5 cut(s)	57, 239, 252, 725, 1100
DpnI	GATC	4 cut(s)	141, 540, 854, 1086
DpnII	GATC	4 cut(s)	139, 538, 852, 1084
DraIII	CACNNNGTG	1 cut(s)	771
DrdI	GACNNNNNNGTC	1 cut(s)	73
DseDI	GACNNNNNNGTC	1 cut(s)	73
Eam1104I	CTCTTC	3 cut(s)	159, 251, 453
EarI	CTCTTC	3 cut(s)	159, 251, 453
Eco130I	CCWWGG	1 cut(s)	288
Eco24I	GRGCYC	1 cut(s)	96
Eco32I	GATATC	1 cut(s)	349
Eco47I	GGWCC	1 cut(s)	66
Eco91I	GGTNACC	1 cut(s)	1216
EcoO109I	RGGNCCY	1 cut(s)	66
EcoO65I	GGTNACC	1 cut(s)	1216
EcoRI	GAATTC	1 cut(s)	1199
EcoRII	CCWGG	3 cut(s)	306, 1126, 1307
EcoRV	GATATC	1 cut(s)	349
EcoT14I	CCWWGG	1 cut(s)	288
EcoT22I	ATGCAT	1 cut(s)	405
EcoT38I	GRGCYC	1 cut(s)	96
ErhI	CCWWGG	1 cut(s)	288
FaeI	CATG	6 cut(s)	292, 624, 666, 937, 973, 1414
FaqI	GGGAC	2 cut(s)	79, 139
FatI	CATG	6 cut(s)	288, 620, 662, 933, 969, 1410
Fnu4HI	GCNGC	3 cut(s)	783, 942, 1440
FokI	GGATG	6 cut(s)	161, 305, 721, 728, 1106, 1481
FriOI	GRGCYC	1 cut(s)	96
Fsp4HI	GCNGC	3 cut(s)	783, 942, 1440
FspBI	CTAG	1 cut(s)	206
GluI	GCNGC	3 cut(s)	783, 942, 1440
HapII	CCGG	1 cut(s)	954
Hin1II	CATG	6 cut(s)	292, 624, 666, 937, 973, 1414
HincII	GTYRAC	1 cut(s)	510
HindII	GTYRAC	1 cut(s)	510
HindIII	AAGCTT	1 cut(s)	1379
HinfI	GANTC	6 cut(s)	167, 639, 827, 921, 973, 1326
HpaII	CCGG	1 cut(s)	954
HphI	GGTGA	4 cut(s)	212, 293, 691, 822
Hpy166II	GTNNAC	3 cut(s)	39, 492, 510
Hpy188I	TCNGA	6 cut(s)	60, 172, 255, 433, 821, 875
Hpy188III	TCNNGA	4 cut(s)	146, 352, 1426, 1457
Hpy8I	GTNNAC	3 cut(s)	39, 492, 510
HpyAV	CCTTC	1 cut(s)	604
HpyCH4III	ACNGT	7 cut(s)	130, 215, 278, 423, 580, 889, 1234
HpyCH4IV	ACGT	2 cut(s)	758, 1390
HpyF10VI	GCNNNNNNNGC	1 cut(s)	53
HpyF3I	CTNAG	5 cut(s)	57, 239, 252, 725, 1100
HpySE526I	ACGT	2 cut(s)	758, 1390
Hsp92II	CATG	6 cut(s)	292, 624, 666, 937, 973, 1414
KflI	GGGWCCC	1 cut(s)	66
Kzo9I	GATC	4 cut(s)	139, 538, 852, 1084
LmnI	GCTCC	6 cut(s)	91, 195, 395, 565, 790, 1319
Lsp1109I	GCAGC	3 cut(s)	769, 928, 1426
LweI	GCATC	4 cut(s)	139, 286, 743, 1146
MabI	ACCWGGT	2 cut(s)	306, 1307
MaeI	CTAG	1 cut(s)	206
MaeII	ACGT	2 cut(s)	758, 1390
MaeIII	GTNAC	7 cut(s)	754, 828, 1036, 1216, 1228, 1234, 1423
MalI	GATC	4 cut(s)	141, 540, 854, 1086
MboI	GATC	4 cut(s)	139, 538, 852, 1084
MboII	GAAGA	9 cut(s)	74, 131, 173, 176, 268, 440, 475, 1007, 1415
MhlI	GDGCHC	1 cut(s)	96
MlyI	GAGTC	4 cut(s)	176, 836, 967, 1320
MmeI	TCCRAC	1 cut(s)	217
MnlI	CCTC	8 cut(s)	106, 248, 322, 364, 809, 1252, 1408, 1453
Mph1103I	ATGCAT	1 cut(s)	405
MroXI	GAANNNNTTC	1 cut(s)	1203
MseI	TTAA	7 cut(s)	720, 860, 884, 1058, 1193, 1254, 1383
MspA1I	CMGCKG	1 cut(s)	782
MspCI	CTTAAG	1 cut(s)	1382
MspI	CCGG	1 cut(s)	954
MspR9I	CCNGG	3 cut(s)	308, 1128, 1309
MvaI	CCWGG	3 cut(s)	308, 1128, 1309
MwoI	GCNNNNNNNGC	1 cut(s)	53
NcoI	CCATGG	1 cut(s)	288
NdeII	GATC	4 cut(s)	139, 538, 852, 1084
NlaIII	CATG	6 cut(s)	292, 624, 666, 937, 973, 1414
NlaIV	GGNNCC	4 cut(s)	67, 68, 93, 1419
NmuCI	GTSAC	5 cut(s)	754, 828, 1036, 1228, 1423
NsiI	ATGCAT	1 cut(s)	405
PaqCI	CACCTGC	1 cut(s)	1235
PdmI	GAANNNNTTC	1 cut(s)	1203
PfeI	GAWTC	2 cut(s)	639, 921
PkrI	GCNGC	3 cut(s)	784, 943, 1441
PleI	GAGTC	4 cut(s)	175, 835, 967, 1320
PpsI	GAGTC	4 cut(s)	175, 835, 967, 1320
PpuMI	RGGWCCY	1 cut(s)	66
PshBI	ATTAAT	1 cut(s)	860
PsiI	TTATAA	1 cut(s)	1334
Psp5II	RGGWCCY	1 cut(s)	66
Psp6I	CCWGG	3 cut(s)	306, 1126, 1307
PspEI	GGTNACC	1 cut(s)	1216
PspGI	CCWGG	3 cut(s)	306, 1126, 1307
PspN4I	GGNNCC	4 cut(s)	67, 68, 93, 1419
PspPI	GGNCC	1 cut(s)	66
PspPPI	RGGWCCY	1 cut(s)	66
PstI	CTGCAG	1 cut(s)	160
RsaI	GTAC	8 cut(s)	38, 244, 375, 480, 491, 518, 690, 1367
RsaNI	GTAC	8 cut(s)	37, 243, 374, 479, 490, 517, 689, 1366
SaqAI	TTAA	7 cut(s)	720, 860, 884, 1058, 1193, 1254, 1383
SatI	GCNGC	3 cut(s)	783, 942, 1440
Sau3AI	GATC	4 cut(s)	139, 538, 852, 1084
Sau96I	GGNCC	1 cut(s)	66
SchI	GAGTC	4 cut(s)	176, 836, 967, 1320
ScrFI	CCNGG	3 cut(s)	308, 1128, 1309
SduI	GDGCHC	1 cut(s)	96
SexAI	ACCWGGT	2 cut(s)	306, 1307
SfaNI	GCATC	4 cut(s)	139, 286, 743, 1146
SfcI	CTRYAG	1 cut(s)	156
SinI	GGWCC	1 cut(s)	66
SmlI	CTYRAG	2 cut(s)	1382, 1457
SmoI	CTYRAG	2 cut(s)	1382, 1457
SsiI	CCGC	2 cut(s)	780, 1016
SspMI	CTAG	1 cut(s)	206
StyD4I	CCNGG	3 cut(s)	306, 1126, 1307
StyI	CCWWGG	1 cut(s)	288
TaaI	ACNGT	7 cut(s)	130, 215, 278, 423, 580, 889, 1234
TaiI	ACGT	2 cut(s)	761, 1393
TaqI	TCGA	4 cut(s)	351, 608, 1119, 1141
TaqII	GACCGA	1 cut(s)	1127
TatI	WGTACW	4 cut(s)	36, 242, 478, 516
TfiI	GAWTC	2 cut(s)	639, 921
Tru1I	TTAA	7 cut(s)	720, 860, 884, 1058, 1193, 1254, 1383
Tru9I	TTAA	7 cut(s)	720, 860, 884, 1058, 1193, 1254, 1383
TscAI	CASTG	3 cut(s)	135, 1050, 1228
TseFI	GTSAC	5 cut(s)	754, 828, 1036, 1228, 1423
TseI	GCWGC	3 cut(s)	782, 941, 1439
Tsp45I	GTSAC	5 cut(s)	754, 828, 1036, 1228, 1423
TspDTI	ATGAA	7 cut(s)	132, 572, 587, 913, 1110, 1192, 1314
TspGWI	ACGGA	3 cut(s)	56, 950, 1077
TspRI	CASTG	3 cut(s)	135, 1050, 1228
Vha464I	CTTAAG	1 cut(s)	1382
VpaK11BI	GGWCC	1 cut(s)	66
VspI	ATTAAT	1 cut(s)	860
XapI	RAATTY	4 cut(s)	905, 978, 1199, 1301
XmnI	GAANNNNTTC	1 cut(s)	1203
XspI	CTAG	1 cut(s)	206
Zsp2I	ATGCAT	1 cut(s)	405

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.