Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr9

Orthogroup ID

OG0006204

Physical Location & Seq

Genomic Coordinates Forward (+)

15072519 .. 15077774

Gene Structure 5256 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom09g15210.4

Sequence Viewer

CDS Protein Promoter (2k)

Length: 924 bp

ATGGTAGAGAGTGATTTGACCACAAAAAAGGTCGGCTACACGGAAGCCAACTACGCTCAGAGTGGAAGCCACCCGTCAGGCCATCGCAGGGAGCCCTCATTCTCTCGCTGGTGCGATGAAGATGGGACAATGCATTTTGATCGTCTATTAGGAAATACGGATGCGACTGCAGAAGAAGAGTCTGACTTTGAATTGCCCAAGCTCCAACAGGGTGAGCTAGCACACAATATTTTAGATAAGGACAAATACCACAATACAAAATCTCAGAAGAGAAATATGCACTTGAACGGTGGTGATACCATGGATTCTGCTGCTAACCAGGTTGGTGCAAACGGAAACGAGGAGTATTTGCCCTTTGATATCGAGAATGGGTTTGCAAGGGAGGCAAATGGTGTAGATAGCTTTATTTCTATGCATGACCATAAAGCATTACCACCCAATTCGGAGAACCCTATTACTCTTACAAATGTGTTGAAGACATTGTTCTTTGTACTTGTATGGTACACTTTCAGCCTGTTGCTGACCTTGTACAATAAAAGTCTGTTAGGAGATAATTTGGGGAAGTTCCCTGCTCCCTTTTTGATGAATACAGTTCATTTCACAATGCAAGCTGTTTTGTCAAAGGGAATCACATGGTTTTGGTCTAATAGATTCCAAACTGGTGTTGCTATGTCATGGAGAGATTACTTTGTGAAAGTTGTACCGACGGCTATTGGAACAGCAATGGATGTTAATCTAAGCAACGCATCCCTTGTTTTTATATCTGTCACATTTGCCACAATGTGTAAATCAGCTGCTCCTATATTTCTCCTTCTATTTGCTTTTGCTTTCAGATTGGAGTCACCAAGTGTTAGACTTTCAGGGATCGATATTAATTATCTCCCTCGGAATACTATTAACAGTTGCAAAAGAGACAGAATTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005793 GO:0006810 GO:0006811 GO:0006820 GO:0008150 GO:0015711 GO:0015780 GO:0015786 GO:0015931 GO:0034220 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0051179 GO:0051234 GO:0055085 GO:0071702 GO:0071705 GO:0090481 GO:0098656 GO:1901264

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TPT

Protein Analysis

308

Amino Acids

34.49

Weight (kDa)

5.99

Isoelectric Point (pI)

44.85

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006204)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G06470 AT1G06470 AT1G06470 AT1G06470
fragaria_vesca	FvH4_6g27881 FvH4_6g27890
malus_domestica	MD09G1233800.v1.1 MD17G1230200.v1.1
prunus_persica	Prupe.3G108900_v2.0.a1 Prupe.3G108900_v2.0.a1
pyrus_communis	pycom09g15210 pycom09g15220 pycom17g23310
rosa_chinensis	RchiOBHm_Chr2g0131361
rosa_laevigata	RLG00000019180
rosa_multiflora	Rmu_ssc0000019.1_g000035
rosa_roxburghii	Rroxscaffold_2G00113060 Rroxscaffold_4G00296720 Rroxscaffold_4G00296730 Rroxscaffold_4G00296740
rosa_rugosa	Rorug02G0296000 Rorug02G0296100
rosa_samantha	Rh2AG349300 Rh2BG356300 Rh2CG335200 Rh2DG374200
rosa_wichuraiana	Rw2G028350

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	872
AcsI	RAATTY	1 cut(s)	918
AdeI	CACNNNGTG	2 cut(s)	783, 848
AfaI	GTAC	4 cut(s)	492, 503, 530, 702
AfiI	CCNNNNNNNGG	1 cut(s)	88
AgsI	TTSAA	3 cut(s)	191, 286, 475
AjnI	CCWGG	1 cut(s)	318
AluBI	AGCT	5 cut(s)	202, 217, 402, 611, 794
AluI	AGCT	5 cut(s)	202, 217, 402, 611, 794
Alw26I	GTCTC	1 cut(s)	906
AlwI	GGATC	1 cut(s)	872
AoxI	GGCC	1 cut(s)	79
ApeKI	GCWGC	2 cut(s)	311, 794
ApoI	RAATTY	1 cut(s)	918
AseI	ATTAAT	1 cut(s)	873
AsuHPI	GGTGA	3 cut(s)	224, 305, 834
AsuNHI	GCTAGC	1 cut(s)	217
BanII	GRGCYC	1 cut(s)	96
BbsI	GAAGAC	1 cut(s)	482
BbvI	GCAGC	2 cut(s)	298, 781
BccI	CCATC	2 cut(s)	90, 116
BceAI	ACGGC	1 cut(s)	723
BcgI	CGANNNNNNTGC	2 cut(s)	122, 156
BciT130I	CCWGG	1 cut(s)	320
BcoDI	GTCTC	1 cut(s)	906
BfaI	CTAG	1 cut(s)	218
BfmI	CTRYAG	1 cut(s)	168
BisI	GCNGC	2 cut(s)	312, 795
BlsI	GCNGC	2 cut(s)	313, 796
Bme1390I	CCNGG	1 cut(s)	320
BmiI	GGNNCC	1 cut(s)	93
BmrFI	CCNGG	1 cut(s)	320
BmsI	GCATC	2 cut(s)	151, 755
BmtI	GCTAGC	1 cut(s)	221
BpiI	GAAGAC	1 cut(s)	482
Bsa29I	ATCGAT	1 cut(s)	867
BsaBI	GATNNNNATC	1 cut(s)	732
BsaJI	CCNNGG	2 cut(s)	300, 884
Bsc4I	CCNNNNNNNGG	1 cut(s)	88
Bse1I	ACTGG	1 cut(s)	664
Bse3DI	GCAATG	1 cut(s)	729
Bse8I	GATNNNNATC	1 cut(s)	732
BseBI	CCWGG	1 cut(s)	320
BseCI	ATCGAT	1 cut(s)	867
BseDI	CCNNGG	2 cut(s)	300, 884
BseGI	GGATG	3 cut(s)	166, 733, 746
BseJI	GATNNNNATC	1 cut(s)	732
BseLI	CCNNNNNNNGG	1 cut(s)	88
BseMI	GCAATG	1 cut(s)	729
BseMII	CTCAG	2 cut(s)	71, 278
BseNI	ACTGG	1 cut(s)	664
BseRI	GAGGAG	1 cut(s)	356
BseXI	GCAGC	2 cut(s)	298, 781
BshFI	GGCC	1 cut(s)	81
BshVI	ATCGAT	1 cut(s)	867
BslFI	GGGAC	1 cut(s)	139
BslI	CCNNNNNNNGG	1 cut(s)	88
BsmAI	GTCTC	1 cut(s)	906
BsmFI	GGGAC	1 cut(s)	139
BsnI	GGCC	1 cut(s)	81
Bsp1286I	GDGCHC	1 cut(s)	96
Bsp1407I	TGTACA	1 cut(s)	528
Bsp143I	GATC	2 cut(s)	139, 864
Bsp19I	CCATGG	1 cut(s)	300
BspANI	GGCC	1 cut(s)	81
BspCNI	CTCAG	2 cut(s)	70, 277
BspDI	ATCGAT	1 cut(s)	867
BspLI	GGNNCC	1 cut(s)	93
BspMAI	CTGCAG	1 cut(s)	172
BspOI	GCTAGC	1 cut(s)	221
BspPI	GGATC	1 cut(s)	872
BsrDI	GCAATG	1 cut(s)	729
BsrGI	TGTACA	1 cut(s)	528
BsrI	ACTGG	1 cut(s)	664
BssECI	CCNNGG	2 cut(s)	300, 884
BssMI	GATC	2 cut(s)	139, 864
BssT1I	CCWWGG	1 cut(s)	300
Bst2UI	CCWGG	1 cut(s)	320
Bst4CI	ACNGT	3 cut(s)	290, 592, 902
Bst6I	CTCTTC	2 cut(s)	171, 263
BstAUI	TGTACA	1 cut(s)	528
BstC8I	GCNNGC	2 cut(s)	219, 609
BstDEI	CTNAG	3 cut(s)	57, 264, 737
BstDSI	CCRYGG	1 cut(s)	300
BstF5I	GGATG	3 cut(s)	166, 733, 746
BstKTI	GATC	2 cut(s)	142, 867
BstMAI	GTCTC	1 cut(s)	906
BstMBI	GATC	2 cut(s)	139, 864
BstMWI	GCNNNNNNNGC	2 cut(s)	53, 383
BstNI	CCWGG	1 cut(s)	320
BstSCI	CCNGG	1 cut(s)	318
BstSFI	CTRYAG	1 cut(s)	168
BstV1I	GCAGC	2 cut(s)	298, 781
BstV2I	GAAGAC	1 cut(s)	482
Bsu15I	ATCGAT	1 cut(s)	867
BsuRI	GGCC	1 cut(s)	81
BsuTUI	ATCGAT	1 cut(s)	867
BtgI	CCRYGG	1 cut(s)	300
BtgZI	GCGATG	2 cut(s)	68, 129
BtsCI	GGATG	3 cut(s)	166, 733, 746
Cac8I	GCNNGC	2 cut(s)	219, 609
ClaI	ATCGAT	1 cut(s)	867
CsiI	ACCWGGT	1 cut(s)	318
Csp6I	GTAC	4 cut(s)	491, 502, 529, 701
CviAII	CATG	4 cut(s)	301, 416, 633, 675
CviQI	GTAC	4 cut(s)	491, 502, 529, 701
DdeI	CTNAG	3 cut(s)	57, 264, 737
DpnI	GATC	2 cut(s)	141, 866
DpnII	GATC	2 cut(s)	139, 864
DraIII	CACNNNGTG	2 cut(s)	783, 848
Eam1104I	CTCTTC	2 cut(s)	171, 263
EarI	CTCTTC	2 cut(s)	171, 263
Eco130I	CCWWGG	1 cut(s)	300
Eco24I	GRGCYC	1 cut(s)	96
Eco32I	GATATC	1 cut(s)	361
EcoRII	CCWGG	1 cut(s)	318
EcoRV	GATATC	1 cut(s)	361
EcoT14I	CCWWGG	1 cut(s)	300
EcoT22I	ATGCAT	2 cut(s)	135, 417
EcoT38I	GRGCYC	1 cut(s)	96
ErhI	CCWWGG	1 cut(s)	300
FaeI	CATG	4 cut(s)	304, 419, 636, 678
FaqI	GGGAC	1 cut(s)	139
FatI	CATG	4 cut(s)	300, 415, 632, 674
Fnu4HI	GCNGC	2 cut(s)	312, 795
FokI	GGATG	3 cut(s)	173, 733, 740
FriOI	GRGCYC	1 cut(s)	96
Fsp4HI	GCNGC	2 cut(s)	312, 795
FspBI	CTAG	1 cut(s)	218
GluI	GCNGC	2 cut(s)	312, 795
HaeIII	GGCC	1 cut(s)	81
Hin1II	CATG	4 cut(s)	304, 419, 636, 678
HinfI	GANTC	5 cut(s)	179, 305, 627, 651, 839
HphI	GGTGA	3 cut(s)	224, 305, 834
Hpy166II	GTNNAC	1 cut(s)	504
Hpy188I	TCNGA	6 cut(s)	60, 184, 267, 445, 833, 888
Hpy188III	TCNNGA	1 cut(s)	364
Hpy8I	GTNNAC	1 cut(s)	504
Hpy99I	CGWCG	1 cut(s)	709
HpyAV	CCTTC	1 cut(s)	821
HpyCH4III	ACNGT	3 cut(s)	290, 592, 902
HpyCH4V	TGCA	8 cut(s)	133, 170, 280, 329, 377, 415, 607, 906
HpyF10VI	GCNNNNNNNGC	2 cut(s)	53, 383
HpyF3I	CTNAG	3 cut(s)	57, 264, 737
Hsp92II	CATG	4 cut(s)	304, 419, 636, 678
Kzo9I	GATC	2 cut(s)	139, 864
LmnI	GCTCC	4 cut(s)	91, 207, 577, 802
Lsp1109I	GCAGC	2 cut(s)	298, 781
LweI	GCATC	2 cut(s)	151, 755
MabI	ACCWGGT	1 cut(s)	318
MaeI	CTAG	1 cut(s)	218
MaeIII	GTNAC	2 cut(s)	766, 840
MalI	GATC	2 cut(s)	141, 866
MboI	GATC	2 cut(s)	139, 864
MboII	GAAGA	5 cut(s)	131, 185, 188, 280, 487
MhlI	GDGCHC	1 cut(s)	96
MluCI	AATT	5 cut(s)	191, 439, 553, 874, 918
MlyI	GAGTC	2 cut(s)	188, 848
MmeI	TCCRAC	1 cut(s)	229
MnlI	CCTC	4 cut(s)	106, 334, 376, 894
Mph1103I	ATGCAT	2 cut(s)	135, 417
MseI	TTAA	3 cut(s)	732, 873, 897
MspA1I	CMGCKG	1 cut(s)	794
MspR9I	CCNGG	1 cut(s)	320
MvaI	CCWGG	1 cut(s)	320
MwoI	GCNNNNNNNGC	2 cut(s)	53, 383
NcoI	CCATGG	1 cut(s)	300
NdeII	GATC	2 cut(s)	139, 864
NheI	GCTAGC	1 cut(s)	217
NlaIII	CATG	4 cut(s)	304, 419, 636, 678
NlaIV	GGNNCC	1 cut(s)	93
NmuCI	GTSAC	2 cut(s)	766, 840
NsiI	ATGCAT	2 cut(s)	135, 417
PfeI	GAWTC	3 cut(s)	305, 627, 651
PkrI	GCNGC	2 cut(s)	313, 796
PleI	GAGTC	2 cut(s)	187, 847
PpsI	GAGTC	2 cut(s)	187, 847
PshBI	ATTAAT	1 cut(s)	873
Psp6I	CCWGG	1 cut(s)	318
PspGI	CCWGG	1 cut(s)	318
PspN4I	GGNNCC	1 cut(s)	93
PstI	CTGCAG	1 cut(s)	172
PvuII	CAGCTG	1 cut(s)	794
RsaI	GTAC	4 cut(s)	492, 503, 530, 702
RsaNI	GTAC	4 cut(s)	491, 502, 529, 701
SaqAI	TTAA	3 cut(s)	732, 873, 897
SatI	GCNGC	2 cut(s)	312, 795
Sau3AI	GATC	2 cut(s)	139, 864
SchI	GAGTC	2 cut(s)	188, 848
ScrFI	CCNGG	1 cut(s)	320
SduI	GDGCHC	1 cut(s)	96
SetI	ASST	8 cut(s)	33, 204, 219, 324, 404, 527, 613, 796
SexAI	ACCWGGT	1 cut(s)	318
SfaNI	GCATC	2 cut(s)	151, 755
SfcI	CTRYAG	1 cut(s)	168
Sse9I	AATT	5 cut(s)	191, 439, 553, 874, 918
SspI	AATATT	1 cut(s)	229
SspMI	CTAG	1 cut(s)	218
StyD4I	CCNGG	1 cut(s)	318
StyI	CCWWGG	1 cut(s)	300
TaaI	ACNGT	3 cut(s)	290, 592, 902
TaqI	TCGA	2 cut(s)	363, 867
TasI	AATT	5 cut(s)	191, 439, 553, 874, 918
TatI	WGTACW	2 cut(s)	490, 528
TfiI	GAWTC	3 cut(s)	305, 627, 651
Tru1I	TTAA	3 cut(s)	732, 873, 897
Tru9I	TTAA	3 cut(s)	732, 873, 897
TseFI	GTSAC	2 cut(s)	766, 840
TseI	GCWGC	2 cut(s)	311, 794
Tsp45I	GTSAC	2 cut(s)	766, 840
TspDTI	ATGAA	3 cut(s)	132, 584, 599
TspGWI	ACGGA	3 cut(s)	56, 173, 348
VspI	ATTAAT	1 cut(s)	873
XapI	RAATTY	1 cut(s)	918
XspI	CTAG	1 cut(s)	218
Zsp2I	ATGCAT	2 cut(s)	135, 417

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.